Investigation of protein binding affinity in multimodal chromatographic systems using a homologous protein library

A library of cold shock protein B mutant variants was employed to examine differences in protein binding behavior in ion exchange and multimodal chromatography. Single site mutations introduced at charged amino acids on the protein surface resulted in a homologous protein set with varying charge density and distribution. The retention times of the mutants varied significantly during linear gradient chromatography in both systems. The majority of the proteins were more strongly retained on the multimodal cation exchange resin as compared to the traditional cation exchanger. Further, the elution order of the mutants on the multimodal resin was different from that obtained with the ion exchanger. Quantitative structure–property relationship models generated using a support vector regression technique were shown to provide good predictions for the retention times of protein mutants on the multimodal resin. A coarse-grained ligand docking package was employed to examine the various interactions between the proteins and ligands in free solution. The multimodal ligand was shown to utilize multiple interaction types to achieve stronger retention on the protein surface. The use of this protein library in concert with the qualitative and quantitative analyses presented in this paper provides an improved understanding of protein behavior in multimodal chromatographic systems.     

Ball‐Milling‐Induced Amorphization of Zeolitic Imidazolate Frameworks (ZIFs) for the Irreversible Trapping of Iodine

The I₂‐sorption and ‐retention properties of several existing zeolitic imidazolate frameworks (ZIF‐4, ‐8, ‐69) and a novel framework, ZIF‐mnIm ([Zn(mnIm)₂]; mnIm=4‐methyl‐5‐nitroimidazolate), have been characterised using microanalysis, thermogravimetric analysis and X‐ray diffraction. The topologically identical ZIF‐8 ([Zn(mIm)₂]; mIm=2‐methylimidazolate) and ZIF‐mnIm display similar sorption abilities, though strikingly different guest‐retention behaviour upon heating. We discover that this guest retention is greatly enhanced upon facile amorphisation by ball milling, particularly in the case of ZIF‐mnIm, for which I₂ loss is retarded by as much as 200 °C. It is anticipated that this general approach should be applicable to the wide range of available metal–organic framework‐type materials for the permanent storage of harmful guest species.     

Self‐Immolative Activation of β‐Galactosidase‐Responsive Probes for In Vivo MR Imaging in Mouse Models

Our lab has developed a new series of self‐immolative MR agents for the rapid detection of enzyme activity in mouse models expressing β‐galactosidase (β‐gal). We investigated two molecular architectures to create agents that detect β‐gal activity by modulating the coordination of water to Gd^III. The first is an intermolecular approach, wherein we designed several structural isomers to maximize coordination of endogenous carbonate ions. The second involves an intramolecular mechanism for q modulation. We incorporated a pendant coordinating carboxylate ligand with a 2, 4, 6, or 8 carbon linker to saturate ligand coordination to the Gd^III ion. This renders the agent ineffective. We show that one agent in particular (6‐C pendant carboxylate) is an extremely effective MR reporter for the detection of enzyme activity in a mouse model expressing β‐gal.     

A model-coupling framework for nearshore waves,currents, sediment transport,and seabed morphology

This paper presents a framework for synchronously coupling wave, current, sediment transport, and seabed morphology for the accurate simulation of multi-physics coastal ocean processes. The governing equations, which represent models that are commonly adopted in practical simulations, are discretized using finite-difference methods. The resulting system is validated against analytical solutions. In order to test the performance of the proposed framework and the numerical methods, dam-break flow over a mobile-bed and evolution of a wave-driven sand dune are simulated. The interactions among waves, currents, and seabed morphology are illustrated.     

Random holomorphic iterations and degenerate subdomains of the unit disk

Given a random sequence of holomorphic maps of the unit disk to a subdomain , we consider the compositions

The sequence is called the iterated function system coming from the sequence We prove that a sufficient condition on the domain for all limit functions of any to be constant is also necessary. We prove that the condition is a quasiconformal invariant. Finally, we address the question of uniqueness of limit functions.

     

Nickel(0)-catalyzed isomerization of an aryne complex: formation of a dinuclear Ni(I) complex via C-H rather than C-F bond activation

The reaction of the aryne complex (PEt3)2Ni(eta2-C6H2-4,5-F2) with a catalytic amount of Ni(PEt3)2 results in a dinuclear Ni(I) complex from the coupling of the isomer (PEt3)2Ni(eta2-C6H2-3,4-F2), obtained via rearrangement of the aromatic C-H bonds, which demonstrates that Ni(PEt3)2 is kinetically capable of C-H bond activation, even in the presence of C-F bonds. The intermediate [(PEt3)2Ni]2(mu-eta2:eta2-C6H2-4,5-F2) was isolated and crystallographically characterized; the mu-eta2:eta2-bonding mode observed is unprecedented in aryne chemistry.     

Amorphization of the prototypical zeolitic imidazolate framework ZIF-8 by ball-milling

We report the rapid amorphization of the prototypical substituted zeolitic imidazolate framework, ZIF-8, by ball-milling. The resultant amorphous ZIF-8 (a(m)ZIF-8) possesses a continuous random network (CRN) topology with a higher density and a lower porosity than its crystalline counterpart. A decrease in thermal stability upon amorphization is also evident.     

Tailoring surface properties to build colloidal diagnostic devices: controlling interparticle associations

The ability to control the surface properties and subsequent colloidal stability of dispersed particles has widespread applicability in many fields. Sub-micrometer fluorescent silica particles (reporters) can be used to actively encode the combinatorial synthesis of peptide libraries through interparticle association. To achieve these associations, the surface chemistry of the small fluorescent silica reporters is tailored to encourage robust adhesion to large silica microparticles onto which the peptides are synthesized. The interparticle association must withstand a harsh solvent environment, multiple synthetic and washing procedures, and biological screening buffers. The encoded support beads were exposed to different solvents used for peptide synthesis, and different solutions used for biological screening including phosphate buffered saline (PBS), 2-[N-morpholino]ethane sulfonic acid (MES) and a mixture of MES and N-(3-dimethyl-aminopropyl)-N'-ethylcarbodiimide (EDC). The number of reporters remaining adhered to the support bead was quantified after each step. The nature of the associations were explored and tested to optimize the efficiency of these phenomena. Results presented illustrate the influence of the surface functionality and polyelectrolyte modification of the reporters. These parameters were investigated through zeta potential and X-ray photoelectron spectroscopy.