Nonspecific medium effects versus specific group positioning in the antibody and albumin catalysis of the base-promoted ring-opening reactions of benzisoxazoles

The mechanisms by which solvents, antibodies, and albumins influence the rates of base-catalyzed reactions of benzisoxazoles have been explored theoretically. New experimental data on substituent effects and rates of reactions in several solvents, in an antibody, and in an albumin are reported. Quantum mechanical calculations were carried out for the reactions in water and acetonitrile, and docking of the transition state into a homology model of antibody 34E4 and an X-ray structure of human serum albumin was accomplished. A microenvironment made up of catalytic polar groups (glutamate in antibody 34E4 and lysine in human serum albumin) surrounded by relatively nonpolar groups is present in both catalytic proteins.     

Studies on the syntheses of heteroeyelie compounds. Part DVII. A synthesis of (±)-N-norgalanthamine

(±)-N-Norgalanthamine (la) and (±)-N-norlycoramine (Ib) was synthesized through the phenolie oxidation of N-(4-hydroxyphenethyl)-2-bromo-5-hydroxy-4-methoxybenzamide (lIb).     

Smectic layer structure of ferroelectric liquid crystal formed between fine polymer fibres

This paper describes the alignment of ferroelectric liquid crystal (FLC) structures formed between aligned polymer fibres, where the FLC smectic layers are determined by polarising microscopy and X-ray diffraction. The FLC/polymer composite films were formed from a nematic phase FLC/monomer solution using a photopolymerisation-induced phase separation method. It was found that bending of the FLC smectic layers was induced in both the film plane and the cross-sectional plane at the phase transition from smectic A to chiral smectic C of the FLC material. The light transmittance properties of the composite film between crossed polarizers was analysed by light propagation simulation in several optical anisotropic media, based on the evaluated smectic layer model.     

A High Sensitivity Fluorescent Chemo-sensory System Based on β-Cyclodextrin Dimer Modified with Dansyl Moieties

-Cyclodextrin dimer linked with ethylenediamine at the upper rim of the cyclodextrin has been synthesized and then modified with two dansyl moieties inthe presence of N,N'-dicyclohexylcarbodiimide. The sensing ability and bindingproperty of the title compound were investigated for steroids and terpenoids. Thefluorescence intensity of this dimer was decreased when a host–guest complex was formed. The value I/I⁰, where I⁰ and I are fluorescence intensitiesin the absence and presence of a guest and I is I⁰- I, was used as a parameter of sensitivity. This host exhibited a much higher sensitivity and selective molecular recognition ability for bile acids such as ursodeoxycholic acid andchenodeoxycholic acid and terpenoids such as (-)-borneol than the dansyl-modifiedcyclodextrins reported previously including -cyclodextrin dimer. The behaviors of the appended moieties of the host during the formation of host–guest complexes were studied using induced circular dichroism (ICD) and fluorescence spectra. The ICD intensityof this dimer was decreased on accommodation of a guest and this spectral pattern of the title dimer was opposite to that of bis dansyl-modified -cyclodextrin monomer. Theguest-induced variations in the fluorescence and ICD intensities suggest that this dimer formed a 1 : 1 host–guest complex and the appended moieties act as a hydrophobic cap.     

Beta-1,3-glucan polysaccharides as novel one-dimensional hosts for DNA/RNA, conjugated polymers and nanoparticles

Beta-1,3-glucan polysaccharides have triple-stranded helical structures whose sense and pitch are comparable to those of polynucleotides. We recently revealed that the beta-1,3-glucans could interact with certain polynucleotides to form triple-stranded and helical macromolecular complexes consisting of two polysaccharide-strands and one polynucleotide-strand. This unique property of the beta-1,3-glucans has made it possible to utilize these polysaccharides as potential carriers for various functional polynucleotides. In particular, cell-uptake efficiency of the resultant polysaccharide/polynucleotide complexes was remarkably enhanced when functional groups recognized in a biological system were introduced as pendent groups. The beta-1,3-glucans can also interact with various one-dimensional architectures, such as single-walled carbon nanotubes, to produce unique nanocomposites, in which the single-walled carbon nanotubes are entrapped within the helical superstructure of beta-1,3-glucans. Various conductive polymers and gold nanoparticles are also entrapped within the helical superstructure in a similar manner. In addition, diacetylene monomers entrapped within the helical superstructure can be photo-polymerized to afford the corresponding poly(diacetylene)-nanofibers with a uniform diameter. These findings indicate that the beta-1,3-glucans are very attractive and useful materials not only in biotechnology but also in nanotechnology. These unique properties of the beta-1,3-glucans undoubtedly originate from their inherent, very strong helix-forming character which has never been observed for other polysaccharides.     

Incorporation of lipid domains in Cerasome, a morphologically-stable organic-inorganic vesicular nanohybrid

To extend the concept of the Cerasome, an organic-inorganic vesicular nanohybrid, this paper investigates the preparation and characterization of a “mixed” Cerasome. The system consists of a Cerasome-forming lipid 1, a cationic synthetic lipid 2, and a zwitterionic phospholipid 3. Lipid mixtures of 1 and 2 or 1 and 3 were used to prepare the mixed Cerasomes. Their lipid distributions were examined using differential scanning calorimetry (DSC), which showed that 1 and 2 (or 1 and 3) were phase-separated in the mixed Cerasomes. These results seem to be mainly attributable to the polymerizable nature of 1. Results of scanning electron microscopy (SEM) and energy-dispersive X-ray analysis (EDX) showed that 1 and 3 were both incorporated into a single Cerasome, not macroscopically separated to form separate vesicles from each lipid component. Mixed Cerasomes of 1 and 2 showed high morphological stability against a membrane-solubilizing surfactant, incorporating up to 70% of 2. On the other hand, the mixed Cerasomes from 1 and 3 were less stable than the mixed Cerasomes from 1 and 2. This relative instability might be attributable to differences between the mixed Cerasomes from 1 and 2 and 1 and 3 in terms of their vesicular sizes, lipid domain sizes, and their relative effectiveness for siloxane network formation. These results strongly support the formation of mixed Cerasomes that have lipid domains in-plane. Systems described in this study are useful to prepare variously mixed Cerasomes that have different surface functionalities and in-plane lipid distribution, but which have high morphological stability.     

Role of the special pair in the charge-separating event in photosynthesis

We synthesized special-pair/electron-acceptor systems consisting of a complementary slipped cofacial dimer of imidazolyl-substituted zinc porphyrin, bearing pyromellitdiimide as the electron acceptor. In the case of the dimer, the first and second oxidation potentials were split into a total of four peaks in the differential pulse voltammetry measurement. Furthermore, the shift values of the first oxidation potentials obtained by changing the solvent polarity for the dimer were almost half of those observed for the monomer. These results indicate that the radical cation is delocalized over the whole pi system of the dimer. Time-resolved transient absorption measurements revealed that, relative to the corresponding monomer, the dimer accelerated the charge separation rate, but decelerated the charge recombination rate. The smaller reorganization energy of the slipped cofacial dimer relative to that of the monomeric system demonstrates the significance of the special-pair arrangement for efficient charge separation in photosynthesis.     

Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside

We have synthesized the deoxyadenosine derivative tethering a phenyl group (X), which mimics the Watson-Crick A/T base pair. The RNA/DNA hybrid duplexes containing X in the middle of the DNA sequence showed a similar thermal stability regardless of the ribonucleotide species (A, G, C, or U) opposite to X, probably because of the phenyl group stacking inside of the duplex accompanied by the opposite ribonucleotide base flipped in an extrahelical position. The RNA strand hybridized with the DNA strand bearing X was cleaved on the 3'-side of the ribonucleotide opposite to X in the presence of MgCl2, and the RNA sequence to be cleaved was not restricted. The site-specific RNA hydrolysis suggests that the DNA strand bearing X has the advantage of the site-selective base flipping in the target sequence and the development of a "universal deoxyribozyme" to exclusively cleave a target RNA sequence.