Effects of monolayer structures on long-range electron transfer in helical peptide monolayer

Self-assembled monolayers of alpha-helical peptides were prepared on gold, and the effects of the monolayer structures (kind of constituent amino acid, molecular orientation, and molecular packing) on long-range electron transfer through the helical peptides were studied. The helical peptides were 16mer peptides having a thiophenyl linker at the N-terminal for immobilization on gold and a redox active ferrocene moiety at the C-terminal as an electron-transfer probe. The peptides were immobilized on gold by a gold-sulfur linkage and the electron transfer from the ferrocene moiety to gold was studied by electrochemical methods. When two types of the peptides, one with the repeating unit of Leu-Aib (Aib represents 2-aminoisobutyric acid) and the other with that of Ala-Aib, were compared, the electron transfer was found one order slower in the Leu-Aib peptide monolayer than that in the Ala-Aib peptide monolayer. The self-assembled monolayers of the Ala-Aib peptide with mixing of three different lengths of the peptides, 8mer, 12mer, and 16mer without a ferrocene moiety, were also prepared. The monolayer regularity in terms of molecular orientation and packing was higher roughly in the order of the monolayers mixed with 16mer > 12mer > no additive > 8mer, but the electron transfer became faster in the opposite order. The logarithms of the standard rate constants showed a nearly linear relationship with the direct distances between the ferrocene moiety and gold (beta = 0.32 A (-1)). Some data deviated from this linear relationship, but the deviations could be explained from the difference in the molecular packing, which was evaluated from the monolayer capacitance. It is thus concluded that an electron is transferred along a few molecules along the surface normal so that the vertical orientation or the increase of the interchain backbone separation slows down the electron transfer. Further, it is demonstrated that a tightly packed monolayer, where vibrational mode is restricted, suppresses the electron transfer. Three models are proposed to account for the observed molecular dynamics effects on the basis of either electron-transfer mechanism of electron tunneling or sequential hopping.     

Organic solvent-free, enantio- and diastereoselective, direct Mannich reaction in the presence of water

An organocatalyst-mediated, asymmetric Mannich reaction in the presence of water without using organic solvents has been developed. A highly reactive siloxytetrazole hybrid catalyst has been developed for the reaction of dimethoxyacetaldehyde, while the sodium salt of siloxyproline is an effective catalyst of alpha-imino glyoxylate. Excellent enantioselectivity can be realized, and the usage of organic solvents can be reduced compared to the conventional reactions in organic solvents.     

Actinorhodin Biosynthesis Terminates with an Unprecedented Biaryl Coupling Reaction

A plethora of dimeric natural products exist with diverse chemical structures and biological activities. A major strategy for dimerization is aryl coupling catalyzed by cytochrome P450 or laccase. Actinorhodin (ACT) from Streptomyces coelicolor A3(2) has a dimeric pyranonaphthoquinone structure connected by a C−C bond. In this study, we identified an NmrA-family dimerizing enzyme, ActVA-ORF4, and a cofactor-independent oxidase, ActVA-ORF3, both involved in the last step of ACT biosynthesis. ActVA-ORF4 is a unique NAD(P)H-dependent enzyme that catalyzes the intermolecular C−C bond formation using 8-hydroxydihydrokalafungin (DHK-OH) as the sole substrate. On the other hand, ActVA-ORF3 was found to be a quinone-forming enzyme that produces the coupling substrate, DHK-OH and the final product, ACT. Consequently, the functional assignment of all essential enzymes in the biosynthesis of ACT, one of the best-known model natural products, has been completed.     

PRODAN-conjugated DNA: synthesis and photochemical properties

A solvatochromic fluorophore, PRODAN, has been used as a microenvironment-sensitive reporter. Based on the chemistry of PRODAN, we designed and synthesized four novel fluorescent nucleosides, PDNX (X = U, C, A, and G), to which a PRODAN fluorophore was attached at pyrimidine C5 or purine C8. The fluorescent nucleosides sensitively varied the Stokes shift values depending on the orientational polarizability of the solvent. The PDNX incorporated into DNA also changed the Stokes shift values depending on the DNA structure. In particular, the excitation spectrum of the PDNX-containing duplex shifted to a longer wavelength and gave a smaller Stokes shift value when the base opposite PDNX could form a Watson-Crick base pair with PDNX. A lower energy excitation of PDNX-containing DNA resulted in a strong fluorescence emission selective to the Watson-Crick pairing base. This unique photochemical character was applicable to the efficient typing of single-nucleotide polymorphisms of genes.     

Size-tuneable and micro-patterned iron nanoparticles derived from biomolecules via microcontact printing SAM-modified substrates and controlled-potential electrolyses

Site-selected and size-controlled iron nanoparticles were prepared on coplanar surfaces via microcontact printing of SAM-modified Au/mica electrodes and controlled-potential electrolytic reactions using ferritin biomolecules. Ferritin molecules packed like a full monolayer on 6-amino-1-hexanethiol (AHT)- and 11-amino-1-undecanethiol (AUT)-modified Au/mica surface via electrostatic interactions, which did not depend on the chain length of the amino terminal alkane thiols. After heat-treatment at 400 degrees C for 60 min, iron oxide nanoparticles (ca. 5 nm in diameter) derived from ferritin cores were observed at the Au/mica surface by atomic force microscopy (AFM). On the study on the electrochemistry of ferritin immobilized onto AHT- and AUT-modified Au/mica electrodes, the redox response of the ferritin immobilized AHT-modified electrode was clearly observed. On the other hand, no redox peak for ferritin was obtained at the AUT-modified electrode. The electron transfer between ferritin and the electrode through the AUT membrane could not take place. The difference in the electrochemical response of ferritin immobilized onto AHT- and AUT-modified Au/mica was caused by the chain length of the amino terminal alkane thiols. Uniform patterns of AHT and AUT on the Au/mica electrode surface were performed by use of a poly(dimethylsiloxane) (PDMS) stamp. After the immobilization of ferritin onto both AHT- and AUT-modified electrode surfaces, the modified electrode was applied to a -0.5 V potential for 30 min in a phosphate buffer solution. After this procedure, the PDMS stamp patterning image appeared by scanning electron microscopy (SEM) image. The SEM results induced by the size change of the ferritin core consisting of iron(III) by electrolysis.     

Novel method for solving the quantum nonlinear dynamics of photons: use of a classical input

In order to investigate the nonlinear dynamics of photons, one must in principle solve a quantum many-particle problem, which usually requires intensive computation. In this study, we show that the spatial wave function of photons after nonlinear interaction can be obtained with less computation by assuming a classical input pulse and calculating a correlation function in the output field. This method is particularly useful when nonlinear optical media have many mechanical degrees of freedom, where quantum many-particle problems become extremely difficult.     

Biotransformation of (+)-cycloisolongifolol by plant pathogenic fungus Glomerella cingulata

The biotransformation of terpenoids using the plant pathogenic fungus as a biocatalyst to produce useful novel organic compounds was investigated. The biotransformation of sesquiterpen alcohol, (+)-cycloisolongifolol (1) was investigated using plant pathogenic fungus Glomerella cingulata as a biocatalyst. Compound 1 gave one major metabolic product and a number of minor metabolic products. Major product was dehydration at the C-8 position to (+)-dehydrocycloisolongifolene (2). The structure of the product was determined by their spectroscopic data. Glomerella cingulata gave dehydration in the specifically and over 70% conversion.