Structure-activity studies on the fluorescent indicator in a displacement assay for the screening of small molecules binding to RNA

A series of xanthone and thioxanthone derivatives with aminoalkoxy substituents were synthesized as fluorescent indicators for a displacement assay in the study of small-molecule-RNA interactions. The RNA-binding properties of these molecules were investigated in terms of the improved binding selectivity to the loop region in the RNA secondary structure relative to 2,7-bis(2-aminoethoxy)xanthone (X2S) by fluorimetric titration and displacement assay. An 11-mer double-stranded RNA and a hairpin RNA mimicking the stem loop IIB of Rev response element (RRE) RNA of HIV-1 mRNA were used. The X2S derivatives with longer aminoalkyl substituents showed a higher affinity to the double-stranded RNA than the parent molecule. Introduction of a methyl group on the aminoethoxy moiety of X2S effectively modulated the selectivity to the RNA secondary structure. Methyl group substitution at the C1' position suppressed the binding to the loop regions. Substitution with two methyl groups on the amino nitrogen atom resulted in reducing the affinity to the double-stranded region by a factor of 40%. The effect of methyl substitution on the amino nitrogen atom was also observed for a thioxanthone derivative. Titration experiments, however, suggested that thioxanthone derivatives showed a more prominent tendency of multiple binding to RNA than xanthone derivatives. The selectivity index calculated from the affinity to the double-stranded and loop regions suggested that the N,N-dimethyl derivative of X2S would be suitable for the screening of small molecules binding to RRE.     

Rhenium-catalyzed regioselective synthesis of multisubstituted pyridines from β-enamino ketones and alkynes via C-C bond cleavage

A new method is described for the regioselective synthesis of multisubstituted pyridine derivatives. Treatment of N-acetyl β-enamino ketones with alkynes in the presence of the rhenium catalyst, Re(2)(CO)(10), gives multisubstituted pyridines regioselectively. In this reaction, the N-acetyl moieties are important for the selective formation of the multisubstituted pyridines. This reaction proceeds via insertion of alkynes into a carbon-carbon single bond of β-enamino ketones, intramolecular nucleophilic cyclization, and elimination of acetic acid.     

In situ generation of active sites in olefin metathesis

The depth of our understanding in catalysis is governed by the information we have about the number of active sites and their molecular structure. The nature of an active center on the surface of a working heterogeneous catalyst is, however, extremely difficult to identify and precise quantification of active species is generally missing. In metathesis of propene over dispersed molybdenum oxide supported on silica, only 1.5% of all Mo atoms in the catalyst are captured to form the active centers. Here we combine infrared spectroscopy in operando with microcalorimetry and reactivity studies using isotopic labeling to monitor catalyst formation. We show that the active Mo(VI)-alkylidene moieties are generated in situ by surface reaction of grafted molybdenum oxide precursor species with the substrate molecule itself gaining insight into the pathways limiting the number of active centers on the surface of a heterogeneous catalyst. The active site formation involves sequential steps requiring multiple catalyst functions: protonation of propene to surface Mo(VI)-isopropoxide species driven by surface Br?nsted acid sites, subsequent oxidation of isopropoxide to acetone in the adsorbed state owing to the red-ox capability of molybdenum leaving naked Mo(IV) sites after desorption of acetone, and oxidative addition of another propene molecule yielding finally the active Mo(VI)-alkylidene species. This view is quite different from the one-step mechanism, which has been accepted in the community for three decades, however, fully consistent with the empirically recognized importance of acidity, reducibility, and strict dehydration of the catalyst. The knowledge acquired in the present work has been successfully implemented for catalyst improvement. Simple heat treatment after the initial propene adsorption doubled the catalytic activity by accelerating the oxidation and desorption-capturing steps, demonstrating the merit of knowledge-based strategies in heterogeneous catalysis. Molecular structure of active Mo(VI)-alkylidene sites derived from surface molybdena is discussed in the context of similarity to the highly active Schrock-type homogeneous catalysts.     

Nucleation behaviour and anomalous eutectic formation in highly undercooled Fe2O3-La2O3 eutectic melts

Employing an aero-acoustic levitator, the Fe₂O₃-16.5 mol% La₂O₃ eutectic alloy was levitated, melted, undercooled and then solidified under a containerless condition when a continuous laser beam heating system was incorporated. By revealing the surface and cross-sectional microstructures, copious nucleation is confirmed to take place in the undercooled melts solidified by either an external seeding or spontaneous crystallization. The nucleation behaviour of eutectic alloys is summarized, indicating that copious nucleation may be an intrinsic attribute of a eutectic system with the exact eutectic composition in unconstrained solidification. Considering the complexity level of crystal structures of eutectic oxide phases in the Fe₂O₃-La₂O₃ alloy, the linear kinetic constants are approximately estimated and the growth kinetics are discussed. The sluggish growth kinetics of the perovskite-type phase, that is LaFeO₃ with a higher complexity level in a unit cell leads to a decoupled growth within a single eutectic colony when the melt is undercooled to exceed the critical undercooling ΔT = 125 K. It is the decoupled growth that results in the formation of anomalous eutectics. The present concept based on the kinetic constant of different phases can also be applicable to account for the growth behaviour of other oxide eutectics when considering the stable and metastable eutectic reactions in different solidification conditions. The nucleation behaviour and growth modes in some oxide eutectic systems have been predicted in the free solidification from an undercooled state.     

Nuclear microprobe application to semiconductor process development: Silicide formation and multi-layered structure

Abstract

A nuclear microprobe combined with Rutherford backscattering (RBS) has been applied to analysis of silicide formation processes and a multi-layered structure. Lateral overgrowth of cobalt silicide layers on silicon was found to be suppressed by an additional ion beam mixing process, though residual cobalt atoms were found on insulating mask layers by ion beam mixing. Energy shift arising from RBS kinematics was found to deform tomographic images of multi-layered structures. Such deformation was easily corrected by simple data processing.     

RF spectral modulation caused by delayed interference and photodetection of optical noise

We demonstrate that an RF spectral fringe appears when a nonpolarized optical noise and its delayed replica are combined and photo-detected without any polarization control. A theoretical analysis explains the visibility of the fringe and its insensitivity to polarization.     

Decomposition mechanism of methylene blue caused by metallic iron-maghemite mixture

Decomposition mechanism of methylene blue (MB) caused by a mixture of metallic iron-maghemite (Fe⁰-γFe₂O₃) was investigated by means of ⁵⁷Fe-Mössbauer spectroscopy, X-ray diffractometry (XRD), Ultraviolet-Visible Absorption Spectroscopy (UV-vis) and electrospray-ionization mass spectroscopy (ESI-MS). Ten day-leaching test of 10 μmol L^???1 MB aqueous solution and Fe⁰-γFe₂O₃ mixture (mass ratio 3:7) showed a decrease in the concentration from 10.5 to 4.45 μmol L^???1 with first-order rate constant (k) of $1.5_{7} \times 10^{-1}$  day^???1. An ESI-MS study of Fe⁰-γFe₂O₃ mixture (3:7) after the leaching test revealed new peaks at m/z of 100, 110 and 137 due to fragmentation of MB, in addition to those observed at m/z of 284, 270 and 256 which were ascribed to MB, Azure B and Azure A, respectively. ⁵⁷Fe-Mössbauer spectra of Fe⁰-γFe₂O₃ mixture (3:7) resulted in a decrease in absorption area (A) for Fe⁰ (δ?=?0.00_±0.01 mm s^???1, H _int?=?33.0_±0.1 T) from 37.5 to 21.3, 9.7, 7.9, 7.0 and 4.5_±0.5 %, together with an increase in A from 0.0 to 5.0, 13.8, 17.2, 21.0 and 22.4_±0.5 % for octahedral (O _h) iron (Fe^II?+?Fe^III) of Fe₃O₄. XRD study of these samples indicated that the peak intensity at 2Θ of 44.7° being ascribed to Fe⁰ was decreased, while that of 35.6° due to Fe₃O₄ was almost constant; relative peak ratio of Fe $^{0}/\mathrm{Fe}_{3}$ O₄ was decreased from 26.3 to 2.76 after the leaching, indicating that Fe⁰ in the Fe⁰-γFe₂O₃ mixture was oxidized to Fe₃O₄. These experimental results suggest that Fe⁰-γFe₂O₃ mixture could be utilized for the cleaning or decomposition of toxic organic compounds like trichloroethylene.     

Gorenstein Isolated Quotient Singularities of Odd Prime Dimension are Cyclic

In this article, we shall prove that Gorenstein isolated quotient singularities of odd prime dimension are cyclic. In the case where the dimension is bigger than 1 and is not an odd prime number, then there exist Gorenstein isolated noncyclic quotient singularities.     

Practical and robust method for stereoselective preparations of ketene silyl (thio)acetal derivatives and NaOH-catalyzed crossed-Claisen condensation between ketene silyl acetals and methyl esters

We developed an efficient, practical, and robust method for stereoselective preparations of (Z)-ketene trimethylsilyl (TMS) thioacetals from thioesters and alkyl (1Z)- or (1Z,3E)-1,3-bis(TMS)dienol ethers from alkyl β-ketoesters. The former preparation was performed by convenient procedure (LDA-TMSCl, 0-5 °C, 2.5 h), while the latter preparation involved convenient method A (2NaHMDS-2TMSCl) and cost-effective method B (NaH, NaHMDS-2TMSCl). The first catalytic NaOH-catalyzed crossed-Claisen condensation between ketene silyl acetals and methyl esters proceeded successfully to give a variety of α-monomethyl β-ketoesters and inaccessible α,α-disubstituted β-ketoesters. For further extension, a couple of Claisen-aldol tandem reactions of the obtained β-ketoester analogues utilizing TiCl₄ and TiCl₄-Bu₃N reagents smoothly proceeded with good to excellent stereoselectivity.     

Fabrication of carbon nanotube sheets and their bilirubin adsorption capacity

Bilirubin adsorption on carbon nanotube surfaces has been studied to develop a new adsorbent in the plasma apheresis. Powder-like carbon nanotubes were first examined under various adsorption conditions such as temperatures and initial concentrations of bilirubin solutions. The adsorption capacity was measured from the residual concentrations of bilirubin in the solution after the adsorption process using a visible absorption spectroscopy. We found that multi-walled carbon nanotubes (MWCNTs) exhibit greater adsorption capacity for bilirubin molecules than that of single-walled carbon nanotubes (SWCNTs). To guarantee the safety of the adsorbents, we fabricated carbon nanotube sheets in which leakage of CNTs to the plasma is suppressed. Since SWCNTs are more suitable for robust sheets, a complex sheet consisting of SWCNTs as the scaffolds and MWCNTs as the efficient adsorbents. CNT/polyaniline complex sheets were also fabricated. Bilirubin adsorption capacity of CNTs has been found to be much larger than that of the conventional materials because of their large surface areas and large adsorption capability for polycyclic compound molecules due to their surface structure similar to graphite.