Fragmentation study of peptides using Fourier transform ion cyclotron resonance with infrared multiphoton dissociation: experiment and simulation

In this study, the fragmentation of gas-phase protonated Angiotensin II is investigated using electrospray ionization (ESI), Fourier-transform ion cyclotron resonance (FT-ICR), and mass spectrometry (MS) with a laser cleavage infrared multiphoton dissociation (IRMPD) technique. The experimental results show that the spectra peaks for the photoproducts are y2/b6- and y7-type ions, corresponding to the cleavage of His-Pro and Asp-Arg in the parent amino acid sequence. The fragmentation of the peptide under collision-free vacuum conditions is modeled using molecular dynamics simulations (MD). The binding energy for the peptide bonds (C'-N bond) of Angiotensin II is estimated from ab initio calculations. The calculations are directed at predicting experimental measurements of the product ions from the photodissociation of the peptide. The product distributions simulated by the MD dissociation trajectories include predominantly y7/b1 and y2/b6 pair ions.     

Effects of 3,4-dihydrophenyl groups in water-soluble phospholipid polymer on stable surface modification of titanium alloy

The surface of a titanium (Ti) alloy substrate was modified by a simple and quick process using a water-soluble polymer, and the effects of 3,4-dihydroxyphenyl (DHP) groups in the polymer side chain on the modification process were examined. The polymers (PMDP) composed of both 2-methacryloyloxyethyl phosphorylcholine (MPC) unit and 3,4-dihydroxyphenyl methacrylate unit were synthesized for surface anchoring. The Ti alloy substrate was coated with PMDP using an aqueous solution of the polymer. A PMDP layer with a thickness of 20 nm was formed on the Ti alloy substrate simply by dip coating for 10 s without drying. Even when the Ti alloy substrate with PMDP coating was immersed in the aqueous medium for 1 week, no change in the thickness was observed, i.e., the PMDP layer was bound to the surface very stably. Oxidation of the DHP groups reduced the stability of the polymer layer significantly. Thus, the DHP groups play a significant role in achieving stable binding. Protein was adsorbed on the Ti alloy substrate; however, this was not observed for the PMDP-coated Ti alloy substrate. In conclusion, we confirmed the effects of DHP groups in PMDP on the stability of the coating on the Ti alloy substrate. Moreover, we found that surface treatment using PMDP was simple, quick, and reliable, and thus, it has great potential for improving biofouling of Ti alloy substrates used in medical devices.     

Physicochemical properties and plastic crystal structures of phosphonium fluorohydrogenate salts

Fluorohydrogenate salts of quaternary phosphonium cations with alkyl and methoxy groups (tetraethylphosphonium (P(2222)(+)), triethyl-n-pentylphosphonium (P(2225)(+)), triethyl-n-octylphosphonium (P(2228)(+)), and triethylmethoxymethylphosphonium (P(222(101))(+))) have been synthesized by the metatheses of anhydrous hydrogen fluoride and the corresponding phosphonium bromide or chloride precursors. The three salts with asymmetric cations, P(222m)(FH)(2.1)F (m = 5, 8, and 101), are room temperature ionic liquids (ILs) and are characterized by differential scanning calorimetry, density, viscosity, and conductivity measurements. Linear sweep voltammetry using a glassy carbon working electrode shows these phosphonium fluorohydrogenate ILs have wide electrochemical windows (>4.9 V) with the lowest viscosity and highest conductivity in the known phosphonium-based ILs. Thermogravimetry shows their thermal stabilities are also improved compared to previously reported alkylammonium cation-based fluorohydrogenate salts. Differential scanning calorimetry and X-ray diffraction revealed that tetraethylphosphonium fluorohydrogenate salt, P(2222)(FH)(2)F, exhibits two plastic crystal phases. The high temperature phase has a hexagonal lattice, which is the first example of a plastic crystal phase with an inverse nickel arsenide-type structure, and the low-temperature phase has an orthorhombic lattice. The high-temperature plastic crystal phase exhibits a conductivity of 5 mS cm(-1) at 50 °C, which is the highest value for the neat plastic crystals.     

Highly Selective Copper‐Catalyzed Hydroboration of Allenes and 1,3‐Dienes

The highly selective copper‐catalyzed hydroboration of allenes has been developed. Allylboranes and alkenylboranes were selectively prepared by the judicious choice of catalytic species (copper hydride and boryl copper). Furthermore, two types of alkenylboranes could be selectively synthesized by the choice of an appropriate ligand. Mechanistic studies confirmed that the protonation of a (Z)‐σ‐allyl copper species, which was isolated and structurally characterized by single‐crystal X‐ray diffraction, was a key step in these reactions. Besides allenes, this method is also applicable to the selective hydroboration of 1,3‐diene derivatives to afford allylboranes and homoallylboranes.     

Conformational Dynamics of Monomer‐ versus Dimer‐like Features in a Naphthalenediimide‐Based Conjugated Cyclophane

The design and synthesis of an enantiomeric pair of 1,8‐diethynylanthracene‐bridged naphthalenediimide (NDI)‐based cyclophanes ( Cyclo‐NDI s) are reported. Each enantiomer of Cyclo‐NDI exhibits a circularly polarized luminescence signal with a relatively large luminescence dissymmetry factor (g_lum=±8×10^?3). We have further investigated the modulation of through‐space electronic communication between co‐facially oriented NDIs in a discrete Cyclo‐NDI with changes in the temperature. Tuning of the electronic communication results from the conformational transformation of monomer‐ versus dimer‐like features of Cyclo‐NDI , as confirmed by UV/Vis, fluorescence, circular dichroic, and NMR spectroscopic analysis. The temperature‐dependent optical response in the Cyclo‐NDI through the conformational transformation could be utilized as a highly sensitive and reversible optical thermometer in a wide temperature range (100 to ?80 °C).     

Continuous Synthesis of Aryl Amines from Phenols Utilizing Integrated Packed-Bed Flow Systems

Aryl amines are important pharmaceutical intermediates among other numerous applications. Herein, an environmentally benign route and novel approach to aryl amine synthesis using dehydrative amination of phenols with amines and styrene under continuous-flow conditions was developed. Inexpensive and readily available phenols were efficiently converted into the corresponding aryl amines, with small amounts of easily removable co-products (i.e., H₂O and alkanes), in multistep continuous-flow reactors in the presence of heterogeneous Pd catalysts. The high product selectivity and functional-group tolerance of this method allowed aryl amines with diverse functional groups to be selectively obtained in high yields over a continuous operation time of one week.     

Control on the porosity of disk-like hematite particles prepared from a forced hydrolysis reaction using polyvinyl alcohol

The effects of polyvinyl alcohol (PVA) molecules on the porosity of disk-like hematite particles produced from the forced hydrolysis reaction using two kinds of PVA molecules with a well-defined molecular weight and a high degree of saponification (PVA-105 and PVA-124) were investigated. It is evident from TEM and field-emission scanning electron microscope (FE-SEM) measurements that a fraction of particles lost their spherical habit and acquired a disk-like shape by the addition of small amounts of both PVA molecules, though no difference in the particle size between the two PVA systems was observed. FE-SEM images of the particles revealed that the disk-like hematite particles are made up of small cluster particles with a diameter of approx. 5–10 nm. The disk-like particles produced a rather lower concentration for PVA-124 with a higher molecular weight than that for PVA-105 with a lower molecular weight. This fact was due to the large number of hydroxy groups in PVA-124 molecules than in PVA-105; hydroxy groups act as adsorption sites onto polynuclear (PN) primary particles and cause pronounced effects on the formation and structure of particles during the aggregation of PN particles. It was clarified from N₂ adsorption measurements at 77 K that the porosity of the hematite particles can be controlled from microporous to mesoporous by changing the concentrations of PVA-105 and PVA-124, as was classified into three groups, i.e., groups 1, 2, and 3. The control particles produced without PVA molecules, classified into group 1, showed type IV adsorption isotherms, and only the voids produced between spherical particles were detected as mesopores. On the other hand, the particles produced with small amounts of PVA produced micropores as classified in group 2. In this group, the particles produced uniform micropores after being outgassed at 100–200 °C. The hematite particles produced with high concentrations of PVAs were classified into group 3. In this group, the particles after being outgassed at lower temperature produced micropores with diameters between 0.6 and 2.0 nm, though the micropores in the particles changed to mesopores after outgassing at 300 °C. This mesopore formation was attributed to the elimination of the PVA-adsorbed layer by evacuation at 300 °C, i.e., the large voids residing in the disk-like hematite particles make the particles mesoporous. This mesopore formation was further confirmed by adsorption experiments of C₆H₆(benzene) and CCl₄ molecules at 298 K.     

Vacancy ion-exclusion chromatography of aromatic carboxylic acids on a weakly acidic cation-exchange resin

Determination of aromatic carboxylic acids by conventional ion-exclusion chromatography is relatively difficult and methods generally rely on hydrophobic interaction between the solute and the resin. To overcome the difficulties in determining aromatic carboxylic acids a new approach is presented, termed vacancy ion-exclusion chromatography, which is based on use of the sample as mobile phase and an injection of aqueous 10% methanol onto a weakly acidic cation-exchange column (TSKgel OApak-A). Highly sensitive conductivity detection occurred with sharp and well-shaped peaks, leading to very efficient separations. The effects of sulfuric acid concentration added to the mobile phase, flow-rate, and column temperature on the retention volume of tested aromatic carboxylic acids was investigated. Retention times were found to be affected by the concentration of the analytes in the mobile phase and to some extent also by the addition of an organic modifier such as methanol to the injected water sample. Separation of sulfuric acid (SA), naphthalenetetracarboxylic acid (NTCA), phthalic acid (PA) and benzoic acid (BA) was satisfactory using this new approach. Detection limits were 0.66, 0.67, 0.42 and 0.86 microM and detector responses were linear in the range 1-100, 1-80, 2.5-100 and 10-40 microM, for SA, NTCA, PA and BA, respectively. Precision for retention times was 0.36% and for peak areas was 1.5%.     

Preparation and photolysis of polyamides having coumarin dimer component

The ring-opening polyaddition reaction of anti and syn head-to-head Coumarin dimers with diamines and the photocleavage behavior of the resulting polyamides were investigated. Anti head-to-head Coumarin dimer successfully reacted with aliphatic and aromatic diamines in an aprotic polar solvent to give corresponding high molecular weight polyamides. The polyamides showed good film forming ability and exhibited solubility behavior typical of polyelectrolytes. Furthermore, these polyamides were found to undergo exclusively asymmetric photocleavage on the cyclobutane rings in the polymer main chain to give a fumaramide unit with elimination of 2,2′-dihydroxystilbene. On the other hand, syn head-to-head Coumarin dimer gave only low molecular weight polyamides. These polymerization and photocleavage behaviors were elucidated in comparison with those of model reactions.     

Effects of magnesium salts and amines on the stereoselectivity in the imine aldol reaction

In the imine aldol reactions of 1 with aromatic aldehydes using magnesium salts in the presence of amines, the threo/erythro ratios of products increased in the order Mg(ClO4)2>MgI2>MgBr2>MgCl2>Mg(OTf)2 and N,N,N',N'-tetramethylethylenediamine (TMEDA)>Et3N. This increase in the threo/erythro ratios of products was estimated to be caused by a retro-imine aldol reaction under thermodynamic control.