Role of Arg123 in Light‐driven Anion Pump Mechanisms of pharaonis Halorhodopsin†

Halorhodopsin (HR) acts as a light‐driven chloride pump which transports a chloride ion from the extracellular (EC) to the cytoplasmic space during a photocycle reaction that includes some photointermediates initiated by illumination. To understand the chloride uptake mechanisms, we focused on a basic residue Arg123 of HR from Natronomonas pharaonis (NpHR), which is the only basic residue located in the EC half ion channel. By the measurements of the visible absorption spectra in the dark and the light‐induced inward current through the membrane, it was shown that the chloride binding and transport ability of NpHR completely disappeared by the change of arginine to glutamine. From flashphotolysis analysis, the photocycle of R123Q differed from that of wildtype NpHR completely. The response of the R123H mutant depended on pH. These facts imply that the positive charge at position 123 is essential for chloride binding in the ground state and for the chloride uptake under illumination. On the basis of the molecular structures of HR and the anion‐transportable mutants of bacteriorhodopsin, the effects of the positive charge and the conformational change of the Arg123 side chain as well as the chloride‐pumping mechanism are discussed.     

Synthesis of 2-substituted 4,5-dihydro-4-oxo-3-furancarboxylates using acylative intramolecular cyclization of sulfonium salts

A simple and efficient synthesis of 4,5-dihydro-4-oxo-3-furancarboxylates using an acylative intramolecular cyclization of sulfonium salts is described. The reaction involved the efficient formation of a mixed anhydride between a linear carboxylic acid and trifluoroacetic anhydride in the presence of N-methylimidazole, followed by the sequential conversion into a highly reactive acylammonium species in situ. This procedure is easily handled, uses readily available inexpensive reagents, and provides a variety of 2-substituted 4,5-dihydro-4-oxo-3-furancarboxylates.     

Synthesis and characterization of manganese and cobalt pyroborates: M2B2O5 (M = Mn,Co)

The magnetic property of Co₂B₂O₅ and the optical property of M₂B₂O₅ (M = Mn, Co) were investigated. Co₂B₂O₅ showed antiferromagnetic behavior below the Néel temperature of T_N ≈ 45 K, and the Weiss temperature was T_W = +7.7 K. The effective magnetic moment of Co was 4.96 μ_B, which indicated that Co was divalent and in a high-spin state. Absorptions attributed to the d–d transitions in Mn²⁺ and Co²⁺ ions were observed at 250–650 nm in the diffuse reflection spectra. The optical absorption edges of Mn₂B₂O₅ and Co₂B₂O₅ were at 243 nm (5.11 eV) and 299 nm (4.15 eV), respectively.     

Perturbation theory analysis for electronic response of DNA base pairs

The electronic responses of duplex B-DNA sequences are investigated using perturbation theory analyses. The electronic polarizability and effective mass are computed for base pair doublets and triplets and the electronic structures are calculated according to density functional theory. High polarizability and a light effective mass are obtained in a sequence such as 5′-GGG-3′. The results indicate that the concentration of GC base pairs causes a high response of the electronic states, and molecular orbitals that are very responsive to the electric field tend to be reactive with other orbitals or conducting hole carriers. Furthermore, the interaction between the electronic states and a positively charged wavepacket is discussed, assuming hole injection in the DNA sequences. The sequence of 5′-GGG-3′ responds sensitively to the external hole approach, which is presumably injected to a guanine site.     

Fast image enlargement using predefined codebook and eigenspace backprojection for lost pixel

In this paper, a new image enlargement method applying the backprojection for lost pixel (BPLP) to the predefined codebook-based method is proposed. BPLP is a method for image restoration. In BPLP, the eigenspace reflecting the characteristics of an input image is generated from the remained pixels and is used to restore the missing pixels. In the proposed method, the eigenspace is replaced by one generated from the predefined codebook (PDC). PDC represents edge-blurring properties in a small image patch and consists of pairs of low- and high-frequency image patches on various edge patterns. By replacing the PDC-based estimation of lost high-frequency components with BPLP, a fast image enlargement method retaining its performance can be developed. Through some experiments, the effectiveness of the proposed method was demonstrated. Especially, it was confirmed that the processing time of the proposed method was shortened to about 1/50 that of the PDC-based method.     

Semiempirical Pm3 Quantum Mechanics Calculations of Carbohydrate Crystals

ABSTRACT

Miniature crystal models of six small carbohydrates were examined using the PM3 semiempirical quantum mechanics method. The minicrystal structures, consisting of 27 sugar residues, were optimized by the combined procedure of partial optimization and reconstruction of the model, while maintaining the original crystal symmetries. All of the minicrystals were successfully optimized without exhibiting a great increase in an energy at any reconstruction step. Some minicrystals showed a prolonged behavior of optimization cycles. A major source of structure change appeared to arise from hydroxyl group rotations wherein the largest movements mostly occurred in an early optimization stage. No significant deformations in geometry of either residues or hydrogen bonds were observed in the final minicrystal structures. The thermodynamic values calculated for the optimized minicrystals were in reasonably good agreement with the literature data. The present study indicated that the PM3 semiempirical method successfully predicted the basic features of intermolecular hydrogen bonding involved in a condensed system.     

Synthesis and characterization of Ti–Ni shape memory alloy thin films by pulsed laser deposition

Shape-memory alloys are crucial in various industrial fields. However, a high-quality film synthesis method has not been established yet. Here we examine optimum conditions for synthesis of thin films by pulsed laser deposition of Ti–Ni alloy target in vacuum. We investigated surface morphologies and chemical compositions of the films which were obtained under various conditions. We found that the suitable Ti/Ni ratio was obtained by adjusting the distance between the target and the substrate in vacuum. In parallel, we analyzed plasma plume by optical emission spectroscopy and time-of-flight mass spectrometry. We discuss the basic behavior of ablated particles in vacuum.     

An efficient procedure for preparation of 2-monoalkyl or 2-monoaryl-3-ethoxycyclobutanones

Optimized reaction conditions for the preparation of various 2-monosubstituted 3-ethoxycyclobutanones are described. 2-Monoalkyl 3-ethoxycyclobutanones were efficiently prepared by the reaction of the corresponding carboxylic acid chlorides and an excess amount of ethyl vinyl ether in the presence of diisopropylethylamine at 90 °C in a sealed tube. 2-Monoaryl 3-ethoxycyclobutanones were prepared by using 2,6-lutidine as a base in the above-mentioned procedure.