Efficient peptide mapping and its application to identify embryo proteins in rice proteome analysis

Using direct N-terminal analysis, only 31 N-terminally unblocked proteins out of 100 rice embryo proteins could be identified. To obtain protein sequence information for the remaining 69 blocked proteins, we developed a simple, efficient and rapid method. Using this method, we determined the peptide maps of 20 proteins per day in 10 pmol amounts. Applying this method to rice proteome analysis, we determined the internal sequences of all 69 blocked proteins. A total of 28 proteins out of 100 analyzed showed sequence similarity to the proteins with known functions in the SWISS-PROT and NCBI databases. Alternatively, we also used peptide mass fingerprinting determined by matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS) to identify the rice proteins separated by two-dimensional electrophoresis (2-DE). Although peptide-mass fingerprinting is a high-throughput method, we could not easily identify all the rice proteins or genes by this method, because the complete database information on rice, is not yet available and many proteins are post-translationally modified. Therefore, at present, the improved peptide mapping method as we report here is considered to be very useful in rice proteome analysis, especially for blocked proteins.     

Improved preparation of an amino acid type poly(ethylene glycol) derivative

An amino acid type poly(ethylene glycol) is a useful tool for preparation of a bi- or multivalent poly(ethylene glycol) hybrid of bioactive peptides, but synthesis is problematic. The amino acid type poly(ethylene glycol) was prepared from poly(oxyethylene)diglycolic acid followed by introduction of a fluorenylmethyloxycarbonyl group. The resulting product could be purified easily by LH-20 column chromatography and HPLC.     

Luminescence properties of rhodamine 6G intercalated in surfactant/clay hybrid thin solid films

To develop the solid-state laser oscillator based on laser dye compounds, the incorporation of rhodamine 6G (R6G, a laser dye) in cetyltrimethylammonium (CTA+) cationic surfactant/montmorillonite clay hybrid (HpC) thin solid films was investigated. The R6G/HpC samples were prepared by immersing the HpC films into a R6G aqueous solution with various concentration. X-ray diffraction patterns of the films of HpC, measured before and after the intercalation of R6G, proved the coexistence of both the dye and surfactant in clay interlayer spaces. All prepared thin films exhibited luminescence. It indicates that CTA+ molecules play a role as a partial suppressor of the aggregation of R6G molecules which prevents fluorescence. Moreover, the luminescence property of the present thin films was observed to be dependent on the co-intercalated degree of R6G molecules, indicating that the R6G intercalating in HpC interlayer space molecules exist as two or more luminescence species in the clay interlayer space.     

Reverse‐Selective Microporous Membrane for Gas Separation

Sort the bigs from the smalls : Reverse‐selective membranes, through which bigger molecules selectively permeate, are attractive for developing chemical processes. A new adsorption‐based reverse‐selective membrane that utilizes a Na cation occluded in a zeolitic framework is presented. The membrane developed enables the selective permeation and separation of bigger polar molecules, such as methanol and water, from hydrogen above 473 K.

     

Determination of primary bond scissions by mass spectrometric analysis of ultrasonic degradation products of poly(ethylene oxide‐block‐propylene oxide) copolymers

Ultrasonic degradation of poly(ethylene oxide‐block‐propylene oxide) copolymers consisting of a hydrophilic and a hydrophobic portion was studied with the aim to determine the location of bonds involved in the initial scission of the copolymers. LC–APCI‐IT‐MS and LC–APCI‐orbitrap‐MS were used for the detailed structural analysis of degradation products. The results indicated that initial bond scissions occurred principally at the boundary regions between backbones of polyethylene oxide (PEO) and polypropylene oxide (PPO) chains. Further structural analysis revealed the presence of oxygen adducts in the degradation products. Comparison with a thermal degradation carried out in helium atmosphere, one can conclude that the oxygen adducts are formed by radical reaction with water or dissolving oxygen molecules. The study demonstrated that chemical reactions as well as physical bond stress scissions are involved in the ultrasonic degradation of the copolymers. Copyright © 2010 John Wiley & Sons, Ltd.     

Properties of two-component Langmuir monolayer of single chain perfluorinated carboxylic acids with dipalmitoylphosphatidylcholine (DPPC)

The surface pressure (π)– and the surface potential (ΔV)–area (A) isotherms were obtained for two-component monolayers of four different perfluorocarboxylic acids (FCns; perfluorododecanoic acid: FC12, perfluorotetradecanoic acid: FC14, perfluorohexadecanoic acid: FC16, perfluorooctadecanoic acid: FC18) with dipalmitoylphosphatidylcholine (DPPC) on substrate solution of 0.15 M NaCl (pH 2.0) at 298.2 K as a function of compositions in the mixtures by employing the Wilhelmy method, the ionizing electrode method, the fluorescence microscopy, and the atomic force microscopy. The data for the two-component monolayers on these systems were analyzed in terms of the additivity rule. Assuming a regular surface mixture, the Joos equation which allows one to describe the collapse pressure of a two-component monolayer with miscible components was used to declare the miscibility of the monolayer state, and an interaction parameter and an interaction energy were calculated. The new finding was that FCns and DPPC are miscible or immiscible depending on chain length increment of fluorocarbon part. That is, FC12/DPPC monolayer was perfectly miscible, and FC14/DPPC, and FC16/DPPC (0 ≤ X_FC16 ≤ 0.3) monolayers were partially miscible. While FC16/DPPC (0.3 < X_FC16 < 1) and FC18/DPPC systems are immiscible in the monolayer state. Furthermore, the mean molecular area, the surface dipole moment, and the phase diagrams enabled us to estimate the molecular orientation of four different perfluorocarboxylic acids/DPPC in the two-component monolayer state. One type of phase diagrams was obtained and classified into the positive azeotropic type. The miscibility of FCns and DPPC in the monolayer was also supported by fluorescence microscopy and atomic force microscopy. FC12/DPPC, FC14/DPPC and FC16/DPPC (0 ≤ X_FC16 ≤ 0.3) two-component monolayers on 0.15 M NaCl (pH 2) showed that FC12, FC14 and FC16 (0 ≤ X_FC16 ≤ 0.3) can dissolve or partially dissolve the ordered solid DPPC domains formed upon compression. This indicates that these fluorinated amphiphiles soften or harden the lipid depending on their chain length.     

Reversible pH-induced transformation of micellar aggregates between hemicylinders and laterally homogeneous layers at graphite-solution interfaces

pH-induced transformation between a hemicylindrical aggregate and a laterally homogeneous layer at the graphite-solution interface was demonstrated in micellar aggregates of dodecyldimethylamine oxide (C12DMAO) using atomic force microscopy (AFM). Nonionic C12DMAO (pH~8) and fully-ionized cationic C12DMAO (pH~1.5) both formed hemicylindrical aggregates on graphite, similar to aggregates formed by many other ionic (or nonionic) surfactants on graphite. However, a laterally homogeneous layer was observed in the case of nearly half-ionized C12DMAO around pH~4 (a 1:1 mixture of the nonionic and the cationic species). These results indicated that the surface curvature of the C12DMAO aggregates on graphite was the smallest around the degree of ionization =0.5, despite charging up the nonionic hemicylindrical aggregates. Using AFM images and the corresponding force curves, the transformation between the hemicylindrical aggregate and the laterally homogeneous layer was found to be reversible via a change in pH. The formation of the laterally homogeneous layer of nearly half-ionized C12DMAO is explained by hydrogen bond formation between the nonionic and the cationic headgroups.     

Effect of ionic surfactants on the oscillation frequency of one-electrode-separated piezoelectric quartz crystals modified with chitosan and its derivative

From the pH dependence of oscillation frequencies of one-electrode-separated piezoelectric quartz crystals (ESPQCs) modified with chitosan and N-(1,3-dicarboxypropyl) chitosan (DCPC) in buffer solutions, it was deduced that the chitosan and DCPC films on an ESPQC contained water and that the water content depended on pH. Contrary to the expectation based on the Sauerbrey equation, the binding of ionic surfactants to chitosan and DCPC films increased the frequencies. This apparently abnormal phenomenon was explained by the release of water in swollen films. The frequency of the DCPC-modified ESPQC increased on addition of sodium dodecyl sulfate and hexadecyltrimethylammonium chloride at pH lower and higher, respectively, than 7.8. A linear relationship between surfactant concentration and frequency shift, whose slope depended on only the chain length of the surfactant alkyl group, was obtained in the range 5–50 µmol dm^–3 hexadecyltrimethylammonium chloride. The DCPC-modified ESPQC can be used for a quantitative determination of cationic surfactants in this concentration range.     

Characteristics of granular boehmite and its ability to adsorb phosphate from aqueous solution

In this study, we investigated the surface properties of granulated boehmite with vinyl acetate (G-BE20) and measured the amount of phosphate it adsorbed and the effect of contact time and solution pH on the adsorption process. The specific surface area (144.9?m²/g) and the number of surface hydroxyl groups (0.88?mmol/g) of G-BE20 were smaller than those of virgin boehmite (BE), which gave a specific surface area and number of surface hydroxyl groups of 297.0?m²/g and 1.08?mmol/g, respectively. The amount of phosphate adsorbed increased with the temperature. The isotherm model of Langmuir was used to fit experimental adsorption equilibrium data for phosphate adsorption onto G-BE20. The calculated thermodynamic parameters show the spontaneous and endothermic nature of the adsorption process. The equilibrium adsorption onto G-BE20 was reached within 16?h and the amount of phosphate adsorbed was 8.4?mg/g. The kinetic mechanism of phosphate uptake was evaluated with two different models: the Largergren pseudo first- and pseudo second-order models. The data obtained showed a better fit to the pseudo second-order model (0.991) than to the pseudo first-order model (0.967), as indicated by the r values. The rate constants for the adsorption of phosphate onto G-BE20 were calculated as 0.481?1/h and 0.029?g/mg?h. The adsorption of phosphate onto G-BE20 was the maximum in the pH range 3.0-4.0.