Synthesis of Privileged Scaffolds by Using Diversity‐Oriented Synthesis

An elegant reagent‐controlled strategy has been developed for the generation of a diverse range of biologically active scaffolds from a chiral bicyclic lactam. Reduction of the chiral lactam with LAH or alkylation with LHMDS to trigger different cyclization reactions have been shown to generate privileged scaffolds, such as pyrrolidines, indolines, and cyclotryptamines. Their amenability to substitution allows us to create various compound libraries by using these scaffolds. In silico studies were used to estimate the drug‐like properties of these compounds. Selected compounds were subjected to anticancer screening by using three different cell lines. In addition, all these compounds were subjected to antibacterial screening to gauge the spectrum of biological activity that was conferred by our DOS methodology. Gratifyingly, with no additional iterative cycles, our method directly generated anticancer compounds with potency at low nanomolar concentrations, as represented by spiroindoline 14 .     

Brønsted acid-catalyzed simple and efficient synthesis of 1,2,4-triazoles and 1,2,4-oxadiazoles using 2,2,2-trichloroethyl imidates in PEG

A facile and highly efficient synthesis of 3,4,5-trisubstituted 1,2,4-triazoles and 3,5-disubstituted 1,2,4-oxadiazoles from 2,2,2-trichloroethyl imidates using PEG as a solvent and employing PTSA as the catalyst under mild conditions is described.     

Light scattering by Gaussian random ellipsoid particles: First results with discrete-dipole approximation

We introduce the stochastic geometry of a Gaussian random ellipsoid (GE) and, with the discrete-dipole approximation, carry out preliminary computations for light scattering by wavelength-scale GE particles. In the GE geometry, we describe the base ellipsoid by the three semiaxes a?b?c. The axial ratios b:a and c:a appear as two shape parameters additional to those of the Gaussian random sphere geometry (GS). We compare the scattering characteristics of GE particles to those of ellipsoids. Introducing irregularities on ellipsoids smoothens the angular scattering characteristics, in a way analogous to the smoothening of spherical particle characteristics in the case of GS particles.     

An N log N approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions

Presented here is a method, the hierarchical charge partitioning (HCP) approximation, for speeding up computation of pairwise electrostatic interactions in biomolecular systems. The approximation is based on multiple levels of natural partitioning of biomolecular structures into a hierarchical set of its constituent structural components. The charge distribution in each component is systematically approximated by a small number of point charges, which, for the highest level component, are much fewer than the number of atoms in the component. For short distances from the point of interest, the HCP uses the full set of atomic charges available. For long‐distance interactions, the approximate charge distributions with smaller sets of charges are used instead. For a structure consisting of N charges, the computational cost of computing the pairwise interactions via the HCP scales as O(N log N), under assumptions about the structural organization of biomolecular structures generally consistent with reality. A proof‐of‐concept implementation of the HCP shows that for large structures it can lead to speed‐up factors of up to several orders of magnitude relative to the exact pairwise O(N²) all‐atom computation used as a reference. For structures with more than 2000–3000 atoms the relative accuracy of the HCP (relative root‐mean‐square force error per atom), approaches the accuracy of the particle mesh Ewald (PME) method with parameter settings typical for biomolecular simulations. When averaged over a set of 600 representative biomolecular structures, the relative accuracies of the two methods are roughly equal. The HCP is also significantly more accurate than the spherical cutoff method. The HCP has been implemented in the freely available nucleic acids builder (NAB) molecular dynamics (MD) package in Amber tools. A 10 ns simulation of a small protein indicates that the HCP based MD simulation is stable, and that it can be faster than the spherical cutoff method. A critical benefit of the HCP approximation is that it is algorithmically very simple, and unlike the PME, the HCP is straightforward to use with implicit solvent models. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Bianchi Types V and VI<Subscript>0</Subscript> Cosmic Strings Coupled with Maxwell Fields in Bimetric Theory

Spatially homogeneous Bianchi types V and VI₀ cosmological models are studied with source cosmic cloud strings coupled with electromagnetic field in Rosen’s (Gen. Relativ. Gravit. 4:435, 1973) bimetric theory of relativity. It is observed that Bianchi type V space time is feasible whereas Bianchi type VI₀ is not feasible. In the feasible case different equations of state for cosmic strings with Maxwell fields do not survive in this theory and the space-time turns out to be flat.     

A short route to the synthesis of pyrroloacridines via Ullmann-Goldberg condensation

A concise method for the preparation of pyrroloacridines was reported via CuI mediated Ullmann-Goldberg condensation of 5-amino-2-methylindoles and o-halobenzoic acid derivatives followed by cyclization with POCl₃.     

Oxidative Ionization Under Certain Negative-Ion Mass Spectrometric Conditions

1,4-Hydroquinone and several other phenolic compounds generate (M – 2) ^–? radical-anions, rather than deprotonated molecules, under certain negative-ion mass spectrometric conditions. In fact, spectra generated under helium-plasma ionization (HePI) conditions from 1,4-hydroquinone and 1,4-benzoquinone (by electron capture) were practically indistinguishable. Because this process involves a net loss of H^? and H⁺, it can be termed oxidative ionization. The superoxide radical-anion (O₂ ^–?), known to be present in many atmospheric-pressure plasma ion sources operated in the negative mode, plays a critical role in the oxidative ionization process. The presence of a small peak at m/z 142 in the spectrum of 1,4-hydroquinone, but not in that of 1,4-benzoquinone, indicated that the initial step in the oxidative ionization process is the formation of an O₂ ^–? adduct. On the other hand, under bona fide electrospray ionization (ESI) conditions, 1,4-hydroquinone generates predominantly an (M – 1) ^– ion. It is known that at sufficiently high capillary voltages, corona discharges begin to occur even in an ESI source. At lower ESI capillary voltages, deprotonation predominates; as the capillary voltage is raised, the abundance of O₂ ^–? present in the plasma increases, and the source in turn increasingly behaves as a composite ESI/APCI source. While maintaining post-ionization ion activation to a minimum (to prevent fragmentation), and monitoring the relative intensities of the m/z 109 (due to deprotonation) and 108 (oxidative ionization) peaks recorded from 1,4-hydroquinone, a semiquantitative estimation of the APCI contribution to the overall ion-generation process can be obtained.

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Motion of a rigid plastic cantilever in a damping medium under transverse impact

The motion of a rigid plastic cantilever beam which is surrounded by a damping medium and struck transversely at the tip by a moving mass is studied. The elementary theory, which disregards effects due to rate of straining and geometry changes is used. The governing equations of motion are integrated numerically. For comparison the case of discrete damping provided at the tip only is also solved. Results are presented for a wide range of parameters.     

Plastic response of orthotropic circular plates under blast loading

The dynamical behaviour of a simply supported, orthotropic, circular plate subjected to strong blast is considered. The blast is assumed to impart an axisymmetric transverse, velocity which has a general Gaussian distribution spatially. It is concluded that the rate of growth of plastic regimes and the final plastic deformation strongly depend upon the initial Gaussian distribution parameter.