Multiple-injection affinity capillary electrophoresis to examine binding constants between glycopeptide antibiotics and peptides

Multiple-injection affinity capillary electrophoresis (MIACE) was used to determine binding constants (K(b)) between vancomycin, ristocetin, and teicoplanin from Streptomyces orientalis, Nocardia lurida, and Actinoplanes teichomyceticus, respectively, and fluorenylmethoxycarbonyl (Fmoc)-(Gly, Ala, Val, and Phe)-D-Ala-D-Ala peptides. In this technique, separate plugs of sample containing non-interacting standards, peptide one, buffer, and peptide two, were injected into the capillary column and electrophoresed. Peptides migrate through the column at similar electrophoretic mobilities but remain as distinct zones due to the buffer plug between peptides. The electrophoresis is then carried out in an increasing concentration of antibiotic in the running buffer. Continued electrophoresis results in a shift in the migration time of the peptides upon binding to the antibiotic. Analysis of the change in the relative migration time ratio (RMTR) of the resultant complexes relative to the non-interacting standards, as a function of the concentration of antibiotic yields a value for K(b). MIACE is a versatile technique that can be used to measure affinity constants between ligands of similar relative molecular mass and charge without the need of separate binding experiments. The findings described, herein, demonstrate the advantages of using MIACE to estimate binding parameters between ligands and receptors.     

Monobridged Si2H4

The rotational spectrum of a new monobridged isomer of Si(2)H(4), denoted here as H(2)Si(H)SiH, has been detected by Fourier transform microwave spectroscopy of a supersonic molecular beam through the discharge products of silane. On the basis of high-level coupled cluster theory, this isomer is calculated to lie only 7 kcalmol above disilene (H(2)SiSiH(2)), the most stable isomeric arrangement of Si(2)H(4), and to be fairly polar, with a calculated dipole moment of mu = 1.14 D. The rotational spectrum of H(2)Si(H)SiH exhibits closely spaced line doubling, characteristic of a molecule undergoing high-frequency inversion. Transition state calculations indicate that inversion probably occurs in two steps: migration of the bridged hydrogen atom to form silylsilylene, H(3)SiSiH, and then internal rotation of the SiH(3) group, followed by the reverse process. The potential energy surface for this type of inversion is quite shallow, with a barrier height of only 2-3 kcalmol. Searches for the rotational lines of silylsilylene, calculated to be of comparable stability to H(2)Si(H)SiH but about five times less polar (mu = 0.23 D), have also been undertaken, so far without success, even though strong lines of H(2)Si(H)SiH have been detected. The favorable energetics and high polarity of monobridged Si(2)H(4) with respect to either disilene or silylsilylene make it a plausible candidate for radioastronomical detection in sources such as IRC + 10216, where comparably large silicon molecules such as SiS, SiC(3), and SiC(4) have already been discovered.     

Two new benzylisoquinoline alkaloids from Papaver triniifolium

From the aerial parts of Papaver triniifolium Boiss. (Papaveraceae) collected from Erzincan (Eastern Anatolia), two new benzylisoquinoline alkaloids, miltanthoridine and miltanthoridinone were isolated. Their structures were established through the use of UV, EIMS, and NMR techniques.     

Elliptic boundary value problems with Gaussian white noise loads

Linear second order elliptic boundary value problems (BVP) on bounded Lipschitz domains are studied in the case of Gaussian white noise loads. The challenging cases of Neumann and Robin BVPs are considered.The main obstacle for usual variational methods is the irregularity of the load. In particular, the Neumann boundary values are not well-defined.In this work, the BVP is formulated by replacing the continuity of boundary trace mappings with measurability. Instead of variational methods alone, the novel BVP derives also from Cameron–Martin space techniques.The new BVP returns the study of irregular white noise to the study of $L^2$-loads.     

Preparation of conducting poly(vinyl chloride)/polyindole composites and freestanding films via chemical polymerization

This study covers the synthesis of conducting polyindole (PIN) homopolymer, poly(vinyl chloride)/polyindole (PVC/PIN) composites, and preparation of their freestanding films. PIN and composites were synthesized chemically by radicalic mechanism using FeCl₃ as an initiator. Films of PVC and PVC/PIN composites were prepared by casting on glass Petri dishes. Mechanical properties of films were examined by stress–strain experiments. From FTIR spectra of polymers, it was revealed that polymerization reaction occurred by 2–3 mechanism. The conductivities of polymers at different temperatures were also measured by four‐probe technique and found in the range 10^?4 to 10^?5 S cm^?1. Magnetic properties of the polymers were analyzed by Gouy scale measurements and were found that their conducting mechanisms are of polaron and bipolaron natures. Thermal properties of polymers were investigated by differential scanning calorimetry (DSC) and thermogravimetric analysis (TGA) and found that they had shown adequate thermal stability. X‐ray diffraction (XRD) spectra showed the amorphous nature of the polymers. Scanning electron microscopy (SEM) was used for microstructural analysis. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 1290–1298, 2010     

Structure of 2-{2-[3-methyl-3-(2,4,6-trimethylphenyl) cyclobutyl]-2-oxoethyl}isoindole-1,3-dione

2-{2-[3-Methyl-3-(2,4,6-trimethylphenyl)cyclobutyl]-2-oxoethyl}isoindole-1,3-dione (C₂₄ H₂₅NO₃) was synthesized, and its crystal structure was determined by X-ray crystallographic techniques. The compound crystallizes in the triclinic space group P-1, with unit cell parameters: a = 14.109(9) Å, b = 14.130(8) Å, c = 12.152(6) Å, = 105.62(5)°, = 113.75(4)°, = 98.78(5)°, V = 2039.8(19) ų, D _c= 1.223 g/cm³, and Z = 4. The crystal structure has two crystallographically independent molecules, I and II. These molecules are held together by weak intermolecular C—H···O interactions, forming a continuous chain. The dihedral angles between the N-substituted phthalimide moiety and cyclobutane ring in molecules I and II are 60.37(14) and 68.18(18)°, respectively.     

Enzymatic ring‐opening polymerization of ε‐caprolactone by Yarrowia lipolytica lipase in ionic liquids

Yarrowia lipolytica (YLL), Candida rugosa (CRL), and porcine pancreatic lipase (PPL) were employed successfully as catalysts in the enzymatic ring‐opening polymerization (ROP) of ε‐caprolactone in the presence of 1‐ethyl‐3‐methylimidazolium tetrafluoroborate ([EMIM][BF₄]), 1‐butyl‐3‐methylimidazolium tetrafluoroborate ([BMIM][BF₄]), 1‐butylpyridinium tetrafluoroborate ([BuPy][BF₄]), 1‐butylpyridinium trifluoroacetate ([BuPy][CF₃COO]), 1‐ethyl‐3‐methylimidazolium nitrate ([EMIM][NO₃]) ionic liquids. Poly(ε‐caprolactone)s (PCLs) with molecular weights (M_n) in the range of 300–9000 Da were obtained. ¹H‐ and ¹³C‐NMR analyses on PCLs formed by YLL, CRL, and PPL showed asymmetric telechelic α‐hydroxy‐ω‐carboxylic acid end groups. Differences between CP‐MAS and MAS spectra are observed and discussed in terms of morphology. MALDI‐TOF spectra show the formation of at least seven species. Differential scanning calorimetry (DSC) and Wide Angle X‐Ray Scattering (WAXS) results demonstrate the high degree of crystallinity present in all the polyesters. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 5792–5805, 2009     

Magnus’ expansion for time-periodic systems: Parameter-dependent approximations

Magnus’ expansion solves the nonlinear Hausdorff equation associated with a linear time-varying system of ordinary differential equations by forming the matrix exponential of a series of integrated commutators of the matrix-valued coefficient. Instead of expanding the fundamental solution itself, that is, the logarithm is expanded. Within some finite interval in the time variable, such an expansion converges faster than direct methods like Picard iteration and it preserves symmetries of the ODE system, if present. For time-periodic systems, Magnus expansion, in some cases, allows one to symbolically approximate the logarithm of the Floquet transition matrix (monodromy matrix) in terms of parameters. Although it has been successfully used as a numerical tool, this use of the Magnus expansion is new. Here we use a version of Magnus’ expansion due to Iserles [Iserles A. Expansions that grow on trees. Not Am Math Soc 2002;49:430–40], who reordered the terms of Magnus’ expansion for more efficient computation. Though much about the convergence of the Magnus expansion is not known, we explore the convergence of the expansion and apply known convergence estimates. We discuss the possible benefits to using it for time-periodic systems, and we demonstrate the expansion on several examples of periodic systems through the use of a computer algebra system, showing how the convergence depends on parameters.     

NiCl2-catalyzed hydrophosphinylation

[reaction: see text] A new nickel-based catalytic system has been developed for phosphorus-carbon bond formation. The addition of alkyl phosphinates to alkynes is catalyzed by nickel chloride in the absence of added ligand. The reaction generally proceeds in high yields, even with internal alkynes, which were poor substrates in our previously reported palladium-catalyzed hydrophosphinylation of alkyl phosphinates. The method is useful for the preparation of H-phosphinate esters and their derivatives. The one-pot synthesis of various important organophosphorus compounds is also demonstrated. The reaction can be conducted with microwave heating.