Density functional studies of the hydrolysis of aluminum (chloro)hydroxide in water with CPMD and COSMO

Car-Parrinello molecular dynamics (CPMD) and the static density functional method (DFT) with a conductor-like screening model (COSMO) were used to investigate the chemistry of aluminum (chloro)hydroxide in water. With these methods, the stability, reactivity, and acidic nature of the chosen chlorohydrate were able to be determined. Constrained molecular dynamics simulations were used to investigate the binding of chlorine in an aquatic environment. According to the results, aluminum preferred to be 5-fold-coordinated. In addition, the activation energy barriers for the dissociation of chlorine atoms from the original chlorohydrate structure were able to be determined. The actual values for the barriers were 14 +/- 3 and 40 +/- 5 kJ mol (-1). The results also revealed the acidity of the original cationic dimer. DFT with COSMO was used to determine free energy differences for the reactions detected in the molecular dynamic simulations. In conclusion, new results and insight into the aquatic chemistry of the aluminum (chloro)hydroxides are provided.     

Probing phenylalanine/adenine pi-stacking interactions in protein complexes with explicitly correlated and CCSD(T) computations

To examine the effects of pi-stacking interactions between aromatic amino acid side chains and adenine bearing ligands in crystalline protein structures, 26 toluene/(N9-methyl)adenine model configurations have been constructed from protein/ligand crystal structures. Full geometry optimizations with the MP2 method cause the 26 crystal structures to collapse to six unique structures. The complete basis set (CBS) limit of the CCSD(T) interaction energies has been determined for all 32 structures by combining explicitly correlated MP2-R12 computations with a correction for higher-order correlation effects from CCSD(T) calculations. The CCSD(T) CBS limit interaction energies of the 26 crystal structures range from -3.19 to -6.77 kcal mol (-1) and average -5.01 kcal mol (-1). The CCSD(T) CBS limit interaction energies of the optimized complexes increase by roughly 1.5 kcal mol (-1) on average to -6.54 kcal mol (-1) (ranging from -5.93 to -7.05 kcal mol (-1)). Corrections for higher-order correlation effects are extremely important for both sets of structures and are responsible for the modest increase in the interaction energy after optimization. The MP2 method overbinds the crystal structures by 2.31 kcal mol (-1) on average compared to 4.50 kcal mol (-1) for the optimized structures.     

Reduced band gap dithieno[3,2-b:2',3'-d]pyrroles: new n-type organic materials via unexpected reactivity

Direct addition of tetracyanoethylene to N-(p-hexylphenyl)dithieno[3,2-b:2',3'-d]pyrrole yields not only the aromatic mono- and bis-tricyanovinyl-substituted products but also a quinoidal product with dicyanomethylene groups. The analogous reaction with dithieno[3,2-b:2',3'-d]thiophene yields exclusively the aromatic mono-tricyanovinyl product. The aromatic and quinoidal products possess red-shifted absorptions, increased electron affinities, and favorable pi-stacking motifs in comparison to the unsubstituted oligomers.     

Multienzymatic Synthesis of γ-Lactam Building Blocks from Unsaturated Esters and Hydroxylamine

The assembly of enzymatic cascades and multi-step reaction sequences represents an attractive alternative to traditional synthetic-organic approaches. The biocatalytic reaction mediators offer not only mild conditions and permit the use of environmentally benign reagents, but the high compatibility of different enzymes promises more streamlined reaction setups. In this study, a triple-enzymatic strategy was developed that enables the direct conversion of γ,δ-unsaturated esters to N-hydroxy-γ-lactam building blocks. Hereby, a lipase-catalyzed hydroxylaminolysis generates hydroxamic acid intermediates that are subsequently aerobically activated by horseradish peroxidase and glucose oxidase to cyclize in an intramolecular nitroso ene reaction. Utilizing the hydroxylaminolysis/ene-cyclization sequence for the preparation of an aza-spirocyclic lactam, the multi-enzymatic methodology was successfully employed in the synthesis of key intermediates en route to alkaloids of the Cephalotaxus family.     

Metallo-supramolecular self-assembly: the case of triangle-square equilibria

For the efficient self-assembly of metallo-supramolecular complexes, not only reversibility is required but also two other properties have to be controlled as well: (i) The right binding sites need to be programmed into the building blocks at the appropriate positions. (ii) The building blocks must be rigid enough to support the geometrical arrangement and to avoid the unfavorable entropy effects connected with the conformational fixation of flexible molecules. A series of different bis-pyridyl ligands is reported which self-assemble with (dppp)M(OTf) 2 complexes (dppp = 1,3-bis-(diphenylphosphino)propane; M = Pd (II), Pt (II)) to yield squares and/or triangles as the products. Enthalpic contributions (higher strain in the triangle) and entropic contributions (higher number of triangles from the same building blocks) determine the equilibrium. The effects of concentration, temperature, and solvent properties on the equilibrium have been studied. To characterize the complexes under study, a combination of (1)H, (31)P, and diffusion-ordered NMR spectroscopy, electrospray-ionization Fourier-transform ion-cyclotron-resonance mass spectrometry, and X-ray crystallography is needed. Variable-temperature NMR spectroscopy provides evidence for fast ligand-exchange processes occurring for the Pd complexes, while the Pt complexes exchange ligands much more slowly.     

Selective low-temperature syntheses of facial and meridional tris-cyclometalated iridium(III) complexes

We have developed a selective low-temperature synthesis of fac and mer tris-cyclometalated Ir(III) complexes. The chloro-bridged dimers [Ir(CwedgeN)2Cl]2 (CwedgeN = cyclometalating ligand) are cleaved in coordinating solvents like acetonitrile to give neutral Ir(CwedgeN)2(NCCH3)Cl species which in turn are reacted with AgPF6 to give hexafluorophosphate salts of the bis-acetonitrile species [Ir(CwedgeN)2(NCCH3)2]PF6 for CwedgeN = 2,2'-thienylpyridine (thpy) and 2-phenylpyridine (ppy). These bis-acetonitrile complexes are excellent starting materials for the synthesis of tris-Ir(III) complexes. The complexes of the general formula fac-Ir(CwedgeN)3 were synthesized with the ligands thpy and ppy at 100 degrees C in o-dichlorobenzene from the corresponding [Ir(CwedgeN)2(NCCH3)2]PF6 complexes. The reaction of [Ir(CwedgeN)2(NCCH3)2]PF6 with thpy at room temperature did not give the expected tris complex but instead gave [Ir(thpy)2(N,S-thpy)]PF6, with the third chelating ligand complexed through the sulfur atom of the thiophene ring. [Ir(thpy)2Cl]2, [Ir(ppy)2Cl]2, Ir(thpy)2(NCCH3)Cl, [Ir(thpy)2(NCCH3)2]PF6, [Ir(ppy)2(NCCH3)2]PF6, and [Ir(thpy)2(N,S-thpy)]PF6 were structurally characterized by X-ray crystallography. Additionally, hydroxy-bridged dimers, [Ir(CwedgeN)2(OH)]2, were synthesized as starting materials for the selective synthesis of mer-Ir(CwedgeN)3 complexes at 100 degrees C in o-dichlorobenzene. A mechanism is proposed that may account for the selectivity observed in the formation of the mer-Ir(CwedgeN)3 and fac-Ir(CwedgeN)3 isomers in previous studies and the studies presented here.     

A computational study of the adsorption of small Ag and Au nanoclusters on graphite

The adsorption of silver and gold atoms, and M2, M6, and M13 (M=Ag or Au) clusters on the (0001) graphite surface has been investigated computationally using the density functional theory (DFT) with periodic boundary conditions and plane wave basis functions. The surface has been modeled as a single carbon sheet. The role of dispersion forces has been studied with an empirical classical model. The results show that the clusters avoid hollow sites on the graphite surface, and that the metal atoms favor atop and bond sites. Large structural changes are observed in octahedral M6 and icosahedral M13 clusters on the graphite surface when compared with gas-phase geometries. The results also indicate that if accurate results are required, the dispersion forces between metal and carbon atoms should be included in the studied systems.     

Adipic and malonic acid aqueous solutions: surface tensions and saturation vapor pressures

The surface tension of adipic aqueous solutions was measured as a function of temperature (T=278-313 K) and adipic acid mole fraction (X=0.000-0.003) using the Wilhelmy plate method. A parametrization fitted to these data is presented. The evaporation rates of binary water-malonic and water-adipic acid droplets were measured with a TDMA technique at different temperatures (T=293-300 K) and relative humidities (58-80%), and the saturation vapor pressures of subcooled liquid malonic and adipic acids were derived from the data using a binary evaporation model. The temperature dependence of the vapor pressures was obtained as least-squares fits to the derived vapor pressures: ln(Psat,l) (Pa)=220.2389-22634.96/T (K)-26.66767 ln T (K) for malonic acid and ln(Psat,l) (Pa)=140.6704-18230.97/T (K)-15.48011 ln T (K) for adipic acid.     

Total synthesis of amaminol A: establishment of the absolute stereochemistry

The first synthetic route to amaminol A with use of an organocatalytic intramolecular Diels-Alder reaction is reported. The absolute stereochemistry is proven with a crystallographic image of a cyclic carbamate of amaminol A.