Rapid and efficient routes to phosphatidylinositol 3,4,5-trisphosphates via myo-inositol orthobenzoate

Efficient routes to two phosphatidylinositol 3,4,5-trisphosphate [PtdIns(3,4,5)P₃] analogues with different acyl chains have been developed by using cheaply available myo-inositol as the starting material. The high yield of the orthobenzoate derivative, preferential formation of the required protected inositol diastereomer in its desymmetrization and ease of separation make the synthesis expedient, economical and high yielding. Due to the inherent problem of racemization of diacylglycerol (DAG), the synthesis of phosphatidylinositol phosphates [PIPns] with unambiguous stereochemical purity has always been difficult. Our methodology excludes the possibility of racemization in the DAG unit and thus provides access to PtdIns(3,4,5)P₃ of high optical purity. Since the acyl functionalities are introduced last, the methodology reported is amenable to the synthesis of PtdIns(3,4,5)P₃ with any acyl chain (or even a library of analogues).     

Enthalpic changes on mixing two couples of S- and R-enantiomers of heptane-2-ol, octane-2-ol, nonane-2-ol, 3-chloro-propane-1,2-diol, 2-methyl-1,4-butanediol at 298.15 K

Enthalpies of mixing of (R)- and (S)-enantiomers of liquid chiral compounds such as heptane-2-ol, octane-2-ol, nonane-2-ol, 3-chloro-propane-1,2-diol and 2-methyl-1,4-butanediol have been measured over a range of mole fractions at 298.15 K, albeit very small values. Mixing of heterochiral liquids of heptane-2-ol, octane-2-ol, nonane-2-ol, 3-chloro-propane-1,2-diol, realized enthalpic destabilization over the whole range of mole fractions, whereas that of 2-methyl-1,4-butanediol realized enthalpic stabilization over entire compositions. The maximum values of enthalpies of mixing and the intermolecular interaction of cohesive energy density and entropy of vaporization showed a linear correlation except for the compounds having two chiral centers and others.     

Conformation and molecular dynamics of single polystyrene chain confined in coordination nanospace

Molecules confined in nanospaces will have distinctly different properties to those in the bulk state because of the formation of specific molecular assemblies and conformations. We studied the chain conformation and dynamics of single polystyrene (PSt) chains confined in highly regular one-dimensional nanochannels of a porous coordination polymer [Zn 2(bdc) 2ted] n ( 1; bdc = 1,4-benzenedicarboxylate, ted = triethylenediamine). Characterization by two-dimensional (2D) heteronuclear (1)H- (13)C NMR gave a direct demonstration of the nanocomposite formation and the intimacy between the PSt and the pore surfaces of 1. Calorimetric analysis of the composite did not reveal any glass transition of PSt, which illustrates the different nature of the PSt encapsulated in the nanochannels compared with that of bulk PSt. From N 2 adsorption measurements, the apparent density of PSt in the nanochannel was estimated to be 0.55 g cm (-3), which is much lower than that of bulk PSt. Results of a solid-state (2)H NMR study of the composite showed the homogeneous mobility of phenyl flipping with significantly low activation energy, as a result of the encapsulation of single PSt chains in one-dimensional regular crystalline nanochannels. This is also supported by molecular dynamics (MD) simulations.     

Facile Redox-Induced Aromatic–Antiaromatic Interconversion of a β-Tetracyano-21,23-Dithiaporphyrin under Ambient Conditions

Facile redox-induced aromatic–antiaromatic interconversions were accomplished by using β-tetracyano-21,23-dithiaporphyrin (CN₄S₂Por). Introduced cyano groups not only increased the reduction potential of the porphyrin core but also stabilized the antiaromatic isophlorin (CN₄S₂Iph) by π conjugation. The reduction of CN₄S₂Por with hydrazine in polar solvents quantitatively affords CN₄S₂Iph, even under ambient conditions. CN₄S₂Iph retains a nearly planar conformation and exhibits considerable antiaromaticity. Aerobic oxidation of CN₄S₂Iph to CN₄S₂Por occurs in nonpolar solvents. This study was conducted to contribute to the understanding of the structure–antiaromaticity relationship.     

Oxidative dehydrogenation of dihydropyrimidinones and dihydropyrimidines

[reaction: see text] A mild, practical procedure for oxidative dehydrogenation with catalytic amounts of a Cu salt, K2CO3, and tert-butylhydroperoxide (TBHP) as a terminal oxidant has been developed. This oxidation procedure is generally applicable to dihydropyrimidinones and most dihydropyrimidines.     

Azide–Alkyne Interactions: A Crucial Attractive Force for Their Preorganization for Topochemical Cycloaddition Reaction

A new class of attractive intermolecular interaction between azide and ethynyl structural entities in a wide range of molecular crystals is reported. This interaction was systematically evaluated by using 11 geometrically different structural motifs that are preorganized to direct a solid-state topochemical azide–alkyne cycloaddition (TAAC) reaction. The supramolecular features of the azide–alkyne interaction were mapped by various crystallographic and quantum chemical approaches. Topological analysis shows the noticeable participation of electron density in the azide⋅⋅⋅alkyne interactions. Interestingly, reorientation of the atomic polarizabilities in vicinal azide and alkyne groups upon interaction in crystals favors soft orbital-guided TAAC reactions. Moreover, various solid-state and gas-phase energy decomposition methods of individual azide⋅⋅⋅alkyne interactions summarize that the strength (varies from −5.7 to −30.1 kJ mol⁻¹) is primarily guided by the dispersion forces with a influencing contribution from the electrostatics.     

<Emphasis Type="Italic">Rhizopus stolonifer</Emphasis> LAU 07: a novel source of fructosyltransferase

Increasing awareness of the importance of fructooligosaccharides (FOS) as ingredients of functional foods has led to intensive search of new sources of fructosyltransferases (FTase), enzymes responsible for the conversion of sucrose to fructooligosaccharides. A local strain of Rhizopus stolonifer isolated from spoilt orange fruit with high fructosyltransferase activity (U _t) of 12.31–45.70 U mL⁻¹ during a fermentation period of 24–120 h is herein reported. It showed low hydrolytic activity (U _h) in the range of 0.86–1.78 U mL⁻¹ during the same period. FOS yield of 34 % (1-kestose, GF₂, nystose, GF₃) was produced by FTase obtained from a 72 h-old culture using 60 g of sucrose per 100 mL of the substrate. When the isolate was grown in a defined submerged medium, its pH dropped sharply from the intial value of 5.5 to 1.0 within 24 h, and this value was maintained throughout the fermentation. The biomass content ranged from 8.8 g L⁻¹ at 24 h of fermentation to reach the maximum of 10 g L⁻¹ at 72 h. It was reduced to 5.6 g L⁻¹ at the end of 120 h of fermentation. This report represents the first reference to a strain of Rhizopus as a source of FTase for the production of FOS. The high U _t/U _h ratio shown by this isolate indicates that it may be a good strain for the industrial and commercial production of FOS. However, there is a need of further optimization of the bioprocess to increase the conversion efficiency of sucrose to FOS by the enzyme.     

β‐Sheet to Helical‐Sheet Evolution Induced by Topochemical Polymerization: Cross‐α‐Amyloid‐like Packing in a Pseudoprotein with Gly‐Phe‐Gly Repeats

Protein‐mimics are of great interest for their structure, stability, and properties. We are interested in the synthesis of protein‐mimics containing triazole linkages as peptide‐bond surrogate by topochemical azide‐alkyne cycloaddition (TAAC) polymerization of azide‐ and alkyne‐modified peptides. The rationally designed dipeptide N₃‐CH₂CO‐Phe‐NHCH₂CCH ( 1 ) crystallized in a parallel β‐sheet arrangement and are head‐to‐tail aligned in a direction perpendicular to the β‐sheet‐direction. Upon heating, crystals of 1 underwent single‐crystal‐to‐single‐crystal polymerization forming a triazole‐linked pseudoprotein with Gly‐Phe‐Gly repeats. During TAAC polymerization, the pseudoprotein evolved as helical chains. These helical chains are laterally assembled by backbone hydrogen bonding in a direction perpendicular to the helical axis to form helical sheets. This interesting helical‐sheet orientation in the crystal resembles the cross‐α‐amyloids, where α‐helices are arranged laterally as sheets.     

Structural concept of nitroxide as a lipid peroxidation inhibitor

Nitroxides have antioxidative activities toward lipid peroxidation, but the influence of steric factors is not known. We synthesized alkyl-substituted nitroxides at the α-position of the N-O moiety to enhance lipophilicity and the bulk effect. There was good correlation between the IC(50) and lipophilicity (log P(o/w)) of nitroxides with use of the thiobarbituric acid-reactive substances (TBARS) assay. Furthermore, an inhibitory effect on the TBARS assay was dependent upon the number and length of alkyl groups, though nitroxides had almost identical lipophilicity.