Molybdenum site structure of Escherichia coli YedY, a novel bacterial oxidoreductase

We report a structural characterization using X-ray absorption spectroscopy of the molybdenum site of Escherichia coli YedY, a novel oxidoreductase related to be the sulfite oxidase family of molybdenum enzymes. We find that the enzyme can exist in Mo(V) and Mo(IV) oxidation states but cannot be readily oxidized to the Mo(VI) form. Mo(V) YedY has molybdenum coordination similar to that of sulfite oxidase, with one Mo═O at 1.71 ?, three Mo-S at 2.39 ?, and one Mo-OH at 2.09 ?, which elongates to 2.20 ? upon reduction to Mo(IV), indicating Mo-OH(2) coordination. The Mo(V) enzyme also possesses a long Mo-O coordination at 2.64 ?, which may be due to oxygen coordination by Asn-45 O(δ), with Mo-O(δ) approximately trans to the Mo═O group. A comparison with sulfite oxidase indicates that YedY possesses a much more uniform Mo-S coordination, with a maximum permitted deviation of less than 0.05 ?. Our results indicate that the YedY active site shows considerable similarity to but also important differences from that of reduced forms of sulfite oxidase.     

Influence of silanization on voltammetry at electrodes modified with silica films of controlled porosity formed by electrochemically initiated sol-gel processing

Silica sol-gel (SG) films with templated pores were deposited on glassy carbon (GC) electrodes by an electrochemically initiated process. Generation-4 poly(amidoamine), PAMAM, dendrimer was included in the tetraethoxysilane precursor to facilitate pore formation. The PAMAM adsorbs to the GC, which blocks SG formation at those sites on the electrode. The pore size was 10?±?5?nm. After removal of the PAMAM, cyclic voltammetry of Fe(CN)₆ ^3? and Ru(NH₃)₆ ³⁺ at pH?6.2 showed that the residual negative charge on the silica attenuated the current for the former and increased the current for the latter, presumably by electrostatic repulsion and ion-exchange preconcentration, respectively. This premise was supported by repeating the measurements at the isoelectric point. Methylation of the silanol sites was used to eliminate the charge of the SG. At the end-capped SG, the voltammetry of Fe(CN)₆ ^3? and Ru(NH₃)₆ ³⁺ yielded currents that were independent of pH over the range 2.1 to 7.2. Circumventing the need for the silanization by using (3-glycidyloxypropyl)trimethoxysilane as the sol-gel precursor failed because the oxygen plasma treatment to remove the PAMAM attacked the organically modified sol-gel backbone. The resulting modified electrode mitigated the influence of proteins on the voltammetry of test species and stabilized functionalize nanoparticle catalysts under hydrodynamic conditions.     

Reconciling Electrostatic and n→π* Orbital Contributions in Carbonyl Interactions

Interactions between carbonyl groups are prevalent in protein structures. Earlier investigations identified dominant electrostatic dipolar interactions, while others implicated lone pair n→π* orbital delocalisation. Here these observations are reconciled. A combined experimental and computational approach confirmed the dominance of electrostatic interactions in a new series of synthetic molecular balances, while also highlighting the distance-dependent observation of inductive polarisation manifested by n→π* orbital delocalisation. Computational fiSAPT energy decomposition and natural bonding orbital analyses correlated with experimental data to reveal the contexts in which short-range inductive polarisation augment electrostatic dipolar interactions. Thus, we provide a framework for reconciling the context dependency of the dominance of electrostatic interactions and the occurrence of n→π* orbital delocalisation in C=O⋅⋅⋅C=O interactions.     

Synthesis and studies on spectroscopic as well as electron donating properties of the two alkoxy benzo[b]thiophenes

Synthesis, characterization, steady state and time resolved, using time correlated single photon counting as well as laser flash photolysis techniques, spectroscopic investigations were made for two alkoxy benzo[b]thiophene molecules: 5-methoxy benzo[b]thiophene (5MBT) and 5-methoxymethyl benzo[b]thiophene (5MMBT). In both non-polar n-heptane (NH) and polar acetonitrile (ACN) solvents and at ambient temperature the electronic absorption spectra of these thiophenes exhibit different band systems whose assignments were made from the measurements of the steady state excitation polarization spectra. Steady state fluorescence spectra of these molecules in the different polarity solvents show the presence of non-specific interactions. From the redox properties of the benzothiophenes, measured by cyclic voltammetry, their electron donating properties were observed in the presence of the well-known electron acceptor 9cyanoanthracene (9CNA). Further, detailed studies by laser flash photolysis techniques show that ion-recombination mechanism predominates after the initial excitation of the acceptor moiety using the third harmonic of Nd:YAG laser. This recombination together with the external heavy atom effect (the donor containing 'sulphur' atom) appears to be responsible for the formation of the triplet of the monomeric acceptor 9CNA. From the steady state experiments it is shown that both in non-polar NH and highly polar ACN the quenching in the fluorescence emission of 9CNA in the presence of the benzothiophene donors is brought about primarily by the external heavy atom effect and in ACN, although the presence of the photoinduced ET reaction is confirmed, this process seems, from the observed bimolecular dynamic quenching rate, kq to be significantly masked by the external heavy atom effect.     

Attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy of a single endothelial cell

Attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) with the use of a slide-on germanium accessory followed by chemometric analysis allowed for providing meaningful information about the biochemical composition of a single endothelial cell. In this work, the methodology of the ATR-FTIR measurements of dried cells and dried cells immersed in water solution is presented. The contact of the cell and Ge crystal was set up manually and monitored through the integration of the amide I band. Additionally, the cell imaging in transreflection mode was tested, but the spectral differences between sub-cellular structures were not prominent in the registered spectra. It has been shown that the ATR-FTIR method gives better results due to the increased spatial resolution and S/R ratio as well as small contribution of the optical artifacts.