Universal fluorescent labeling of amplification products using locked nucleic acids

Amplification/hybridization‐based genetic analyses using primers containing locked nucleic acids (LNAs) present many benefits. Here, we developed a novel design for universal fluorescent PCR using LNAs. Universal fluorescent PCR generates intermediate nonlabeled fragments and final fluorescent fragments in a two‐step amplification process that uses locus‐specific primers with universal tails and universal fluorescent primers. In this study, a few standard nucleotides were replaced with LNAs only in the fluorescent universal primers. The sequence of the fluorescent universal primer significantly affected the amplification efficiency. For primers with three LNAs, the fluorescent primers with stable M13(‐47) sequences provided the most efficient signal (approximately tenfold higher than the primers with M13(‐21) sequences at lower Tm values). Moreover, AT‐rich LNA substitutions in the fluorescent primers produced much lower amplification efficiencies than GC‐rich substitutions. GC‐rich LNAs produced greater differences in Tm values among primers, and resulted in the preferential production of fluorescently labeled amplicons. The specificity and sensitivity of LNA‐containing fluorescent primers were assessed by genotyping eight STRs in Japanese individuals, and full STR profiles could be generated using as little as 0.25 ng of genomic DNA. The method permitted clear discrimination of alleles and represents sensitive STR genotyping at a reduced cost.     

Hysteresis behaviour of the nematic-cholesteric phase transition for liquid crystals on polyimide films without use of the rubbing technique

Abstract

The hysteresis behaviour of the nematic-cholesteric phase transition in liquid crystals is closely connected with the alignment of the liquid crystal molecules on the surfaces of treated solid substrates. We have investigated the hysteresis as a function of rubbing strength, using rubbing technology that controls the orientation of the liquid crystal molecules. The surface alignment direction contributes to the hysteresis width, is not dependent on rubbing strength, and is only slightly related to pretilt angles. A no-rubbing treatment, that is, random alignment, is important in-order to create a large hysteresis width on homogeneously aligned polyimide films.     

Magnetooptical Property of Sodium Borosilicate Gel-Glass Containing Bi-YIG Fine Particles

Composite materials which consist of ferro- or ferrimagnetic fine particles in a glass matrix are expected to have a large residual magnetization and coercive force because of their fine magnetic domain structure, and has potential for superior magneto-optical properties compared with single or polycrystalline materials. In this study, the sodium borosilicate (NBS) glass containing Bi-substituted yttrium iron garnet (Bi _x Y_3–x Fe₅O₁₂: BiYIG) fine particles, which show a superior magneto-optical effect, was prepared by the sol-gel method. BiYIG fine particles were stable in NBS gel-glass matrix during densification because the sintering temperature (580°C) of NBS gel was low enough to avoid pyrolysis of BiYIG and the reaction between BiYIG fine particles and the matrix. The Faraday rotation angle spectrum of the composite after deducting the contribution of the NBS glass matrix was intermediate between the reported ones of YIG and Bi_0.25YIG polycrystalline thin films. The change of the Faraday rotation angles of the composite with imposing magnetic field showed a hysteresis loop. It was in good agreement with that of the magnetization curve of the composite.     

Efficient synthesis of (±)-8,14-cedranoxide using electrochemical method as a key step

(±)-8,14-Cedranoxide has been synthesized starting from 3,4-dimethoxyphenol, wherein 6-acetoxymethyl-2,6-dimethyl-9-methoxytricyclo[5.3.1.0^1,5]undec-9-en-8,11-dione as a key intermediate has been produced efficiently by means of electrochemical methods.     

Control of thermoresponsivity of biocompatible poly(trimethylene carbonate) with direct introduction of oligo(ethylene glycol) under various circumstances

Poly(trimethylene carbonate) (PTMC) is a well‐known biodegradable polymer with good biocompatible properties which make it suitable for biomedical applications. Poly(5‐[2‐{2‐(2‐methoxyethoxy)ethyoxy}‐ethoxymethyl]‐5‐methyl‐1,3‐dioxa‐2‐one) (PTMC‐MOE3OM) and copolymers, bearing oligo ethylene glycol (OEG) at the side chain of PTMC backbone, were selected to investigate the cloud point behavior by solvents such as PBS, water, 10% ethanol solution and various ionic strengths. A pH‐responsive copolymer, poly(TMCM‐MOE3OM‐co‐(5‐methyl‐5‐carboxylic‐1,3‐dioxane‐2‐one)) as carboxylic acid carbonate showed a decreased critical temperature at pH 2. Photo‐responsive copolymer, poly(TMCM‐MOE3OM‐co‐coumarin derivatives) bearing 1% and 10% of photo‐induced molecules (7‐[(5‐(5‐methyl‐1,3‐dioxa‐2‐one)methoxy)]‐methoxy coumarin (TMCM‐coumarin)) exhibited a low cloud point because of the hydrophobic moieties. Meanwhile, alternative coumarin polymer including 2% of 4‐methyl‐7‐[(5‐(5‐methyl‐1,3‐dioxa‐2‐one)methoxy)butoxy)]‐methoxy coumarin (TMCM‐4‐methyl‐coumarin) has been successfully synthesized and copolymerized as a novel molecule. The various combinations of monomers were studied and the significant properties were determined via external triggers after copolymerization. This study showed basically synthetic progress toward designs and trivial rationalization of thermoresponsive copolymers close to body temperature. At present, various pendant groups as side part affect to the lower critical solution temperature (LCST) and biodegradable polymer in order to utilize the actual external stimuli application. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 3466–3474     

Heavily Doped and Highly Conductive Hierarchical Nanoporous Graphene for Electrochemical Hydrogen Production

Heavy chemical doping and high electrical conductivity are two key factors for metal‐free graphene electrocatalysts to realize superior catalytic performance toward hydrogen evolution. However, heavy chemical doping usually leads to the reduction of electrical conductivity because the catalytically active dopants give rise to additional electron scattering and hence increased electrical resistance. A hierarchical nanoporous graphene, which is comprised of heavily chemical doped domains and a highly conductive pure graphene substrate, is reported. The hierarchical nanoporous graphene can host a remarkably high concentration of N and S dopants up to 9.0 at % without sacrificing the excellent electrical conductivity of graphene. The combination of heavy chemical doping and high conductivity results in high catalytic activity toward electrochemical hydrogen production. This study has an important implication in developing multi‐functional electrocatalysts by 3D nanoarchitecture design.     

Effects of ligands on the “living” radical polymerization initiated by the aged Cr2+ plus benzoyl peroxide system

The “living” radical polymerization of methyl methacrylate with the aged Cr²⁺ plus benzoyl peroxide (BPO) system in the presence of various amines as ligand has been studied in N,N′-dimethylformamide. Aliphatic amines such as ethylenediamine diminished the rate of polymerization, while dipyridyl (dipy) and o-phenanthroline (phen) accelerated the polymerization rate as follows: phen > dipy > pyridine ? none. Specifically, the rate of polymerization in the presence of phen had a maximum value at [phen]/[Cr²⁺] = 0.5. The retardation of polymerization by aliphatic amines was explained by the interaction of BPO with free and coordinated amines. The latter result may support the mechanism involving the complexed radical proposed for the living radical polymerization with the aged Cr²⁺ + BPO system. In the presence of phen the effects of aging period and aging temperature as well as polymerization temperature were studied and the nature of complexed radicals is discussed.     

Highly sensitive spectrophotometric determination of osmium(VIII) with pyrogallolphthalein and hydrogen peroxide in the presence of Brij 35

Summary A highly sensitive determination of osmium(VIII) is based on the decolouring reaction with pyrogallolphthalein (gallein) and hydrogen peroxide in the presence of Brij 35. Beer's law was obeyed in the range of 0–0.5 ng of osmium(VIII) per 10 ml and the apparent decomposed absorption coefficient was 2.5×10⁹ l mol^–1 cm^–1 at 535 nm.Application of xanthene derivatives in analytical chemistry. Part XCIII. Part XCII see ref. [1]