Rational Design for Cooperative Recognition of Specific Nucleobases Using β‐Cyclodextrin‐Modified DNAs and Fluorescent Ligands on DNA and RNA Scaffolds

We propose a binary fluorimetric method for DNA and RNA analysis by the combined use of two probes rationally designed to work cooperatively. One probe is an oligonucleotide (ODN) conjugate bearing a β‐cyclodextrin (β‐CyD). The other probe is a small reporter ligand, which comprises linked molecules of a nucleobase‐specific heterocycle and an environment‐sensitive fluorophore. The heterocycle of the reporter ligand recognizes a single nucleobase displayed in a gap on the target labeled with the conjugate and, at the same time, the fluorophore moiety forms a luminous inclusion complex with nearby β‐CyD. Three reporter ligands, MNDS (naphthyridine–dansyl linked ligand), MNDB (naphthyridine–DBD), and DPDB (pyridine–DBD), were used for DNA and RNA probing with 3′‐end or 5′‐end modified β‐CyD – ODN conjugates. For the DNA target, the β‐CyD tethered to the 3′‐end of the ODN facing into the gap interacted with the fluorophore sticking out into the major groove of the gap site ( MNDS and DPDB ). Meanwhile the β‐CyD on the 5′‐end of the ODN interacted with the fluorophore in the minor groove ( MNDB and DPDB ). The results obtained by this study could be a guideline for the design of binary DNA/RNA probe systems based on controlling the proximity of functional molecules.     

Variations in recorded acoustic gunshot waveforms generated by small firearms

Analysis of recorded acoustic gunshot signals to determine firearm waveform characteristics requires an understanding of the impulsive signal events, how the waveforms vary among different sources, and how the waveforms are affected by the environment and the recording system. This paper presents empirical results from waveforms produced by different small firearms and an analysis of their variations under different and controlled conditions. Acoustic signals were generated using multiple firearm makes and models firing different ammunition types. Simultaneous recordings from the microphones located at different distances from the source and at different azimuth angles (from the line-of-fire) were used to study source characteristics and sound propagation effects. The results indicate that recorded gunshot waveforms generally consist of multiple acoustic events, and these are observable depending on the received distance and azimuth angle. The source blast size, microphone distance, and microphone azimuth angle are the primary factors affecting the recorded muzzle blast characteristics. Ground or object reflections and ballistic shockwaves and their reflections can interfere with the muzzle blast waveform and its measurements. This experiment confirmed and quantified the wide range of correlation results between waveforms recorded from different source, microphone distance, and microphone angle configurations.     

Synthesis of A2B6‐Type [36]Octaphyrins: Copper(II)‐Metalation‐Induced Fragmentation Reactions to Porphyrins and N‐Fusion Reactions of meso‐(3‐Thienyl) Substituents

5,10,15‐Tris(pentafluorophenyl)tetrapyrromethane was efficiently prepared through a route involving stepwise diaroylation of 5‐pentafluorophenyldipyrromethane. A₂B₆‐type [36]octaphyrins were prepared by the cross condensation of the tetrapyrromethane with aryl aldehydes in moderate yields. A₂B₆‐type [36]octaphyrins bearing 2,4,6‐trifluorophenyl, 2,6‐dichlorophenyl, and phenyl substituents underwent Cu^II‐metalation‐induced fragmentation to give two molecules of AB₃‐type Cu^II porphyrins. A₂B₆‐type [36]octaphyrin bearing 3‐thienyl substituents underwent thermal N‐thienyl fusion reactions to provide a modestly aromatic [38]octaphyrin, which, upon treatment with MnO₂, underwent further N‐thienyl fusion and subsequent oxidation to give a nonaromatic doubly N‐thienyl fused [36]octaphyrin.     

Probing the Rotational Dynamics of meso‐(2‐Substituted)aryl Substituents in A2B‐Type Subporphyrins

A₂B‐type B‐methoxy subporphyrins 3 a – g and B‐phenyl subporphyrins 7 a – c , e , g bearing meso‐(2‐substituted)aryl substituents are synthesized, and their rotational dynamics are examined through variable‐temperature (VT) ¹H NMR spectroscopy. In these subporphyrins, the rotation of meso‐aryl substituents is hindered by a rationally installed 2‐substituent. The rotational barriers determined are considerably smaller than those reported previously for porphyrins. Comparison of the rotation activation parameters reveals a variable contribution of ΔH^≠ and ΔS^≠ in ΔG^≠. 2‐Methyl and 2‐ethyl groups of the meso‐aryl substituents in subporphyrins 3 e , 3 f , and 7 e induce larger rotational barriers than 2‐alkoxyl substituents. The rotational barriers of 3 g and 7 g are reduced by the presence of the 4‐dibenzylamino group owing to its ability to stabilize the coplanar rotation transition state electronically. The smaller rotational barriers found for B‐phenyl subporphyrins than for B‐methoxy subporphyrins indicate a negligible contribution of S_N1‐type heterolysis in the rotation of meso‐aryl substituents.     

Preparation and characterization of novel polyaryloxydiphenylsilanes with high glass transition temperature by melt polycondensation of dianilinodiphenylsilane with bisphenols

Novel polyaryloxydiphenylsilanes with reduced viscosities of 0.31–0.65 dL/g were obtained by the melt polycondensation of dianilinodiphenylsilane with three bisphenols, 2,2-bis (4-hydroxyphenyl)-1,1,1,3,3,3-hexafluoropropane, 3 (4-hydroxyphenyl)-1,1,3-trimethyl-5-indanol, and 9,9-bis (4-hydroxyphenyl) fluorene, at 200–320°C in vacuo. These polymers are all amorphous and readily soluble in a wide variety of organic solvents such as chlorinated and aromatic hydrocarbons, cyclic ethers, and polar aprotic solvents. Because of their bulky and/or rigid ring structures, polyaryloxydiphenylsilanes containing diphenylhexafluoropropane, phenylindane, and diphenylfluorene units in the main chain have high glass transition temperatures of 106, 112, and 172°C, respectively. They are thermally stable showing almost no weight loss up to 350°C in air. Colorless, transparent, but brittle films are obtained from these polymers by solution casting. Ultraviolet transmission is sharply cut off by these polyaryloxydiphenylsilane films at ca. 300 nm, and the cut-off wavelength depends on the bisphenols used.     

Structural and electronic properties of a new molecular conductor, α-(BEDT-TTF)2CsCd(SCN)4

Structural and electronic properties of a new BEDT-TTF based radical cation salt, α-(BEDT-TTF)₂CsCd(SCN)₄, are presented. In the measurements of the electrical resistivity and the magnetic susceptibility, this new α-type salt shows metallic behavior down to low temperature. Measurements of the resistivity under in-plane c-axial strain reveal a newly observed insulating phase, suggesting that α-(BEDT-TTF)₂CsCd(SCN)₄ is placed near an insulating phase which might have close relationships with a superconducting phase realized in α-type salts.     

Regulation of geometry around the ruthenium center of bis(2-pyridinecarboxylato) complexes by the nitrosyl moiety: syntheses, structures, and theoretical studies

cis-[Ru(NO)Cl(pyca)(2)] (pyca = 2-pyridinecarboxylato), in which the two pyridyl nitrogen atoms of the two pyca ligands coordinate at the trans position to each other and the two carboxylic oxygen atoms at the trans position to the nitrosyl ligand and the chloro ligand, respectively (type I shown as in Chart 1), reacted with NaOCH(3) to generate cis-[Ru(NO)(OCH(3))(pyca)(2)] (type I). The geometry of this complex was confirmed to be the same as the starting complex by X-ray crystallography: C(13.5)H(13)N(3)O(6.5)Ru; monoclinic, P2(1)/n; a = 8.120(1), b = 16.650(1), c = 11.510(1) A; beta = 99.07(1) degrees; V = 1536.7(2) A(3); Z = 4. The cis-trans geometrical change reaction occurred in the reactions of cis-[Ru(NO)(OCH(3))(pyca)(2)] (type I) in water and alcohol (ROH, R = CH(3), C(2)H(5)) to form [[trans-Ru(NO)(pyca)(2)](2)(H(3)O(2))](+) (type V) and trans-[Ru(NO)(OR)(pyca)(2)] (type V). The reactions of the trans-form complexes, trans-[Ru(NO)(H(2)O)(pyca)(2)](+) (type V) and trans-[Ru(NO)(OCH(3))(pyca)(2)] (type V), with Cl(-) in hydrochloric acid solution afforded the cis-form complex, cis-[Ru(NO)Cl(pyca)(2)] (type I). The favorable geometry of [Ru(NO)X(pyca)(2)](n)(+) depended on the nature of the coexisting ligand X. This conclusion was confirmed by theoretical, synthetic, and structural studies. The mono-pyca-containing nitrosylruthenium complex (C(2)H(5))(4)N[Ru(NO)Cl(3)(pyca)] was synthesized by the reaction of [Ru(NO)Cl(5)](2)(-) with Hpyca and characterized by X-ray structural analysis: C(14)H(24)N(3)O(3)Cl(3)Ru; triclinic, Ponemacr;, a = 7.631(1), b = 9.669(1), c = 13.627(1) A; alpha = 83.05(2), beta = 82.23(1), gamma = 81.94(1) degrees; V = 981.1(1) A(3); Z = 2. The type II complex of cis-[Ru(NO)Cl(pyca)(2)] was synthesized by the reaction of [Ru(NO)Cl(3)(pyca)](-) or [Ru(NO)Cl(5)](2)(-) with Hpyca and isolated by column chromatography. The structure was determined by X-ray structural analysis: C(12)H(8)N(3)O(5)ClRu; monoclinic, P2(1)/n; a = 10.010(1), b = 13.280(1), c = 11.335(1) A; beta = 113.45(1) degrees; V = 1382.4(2) A(3); Z = 4.     

Compounds having thiourea moiety as derivatization reagents in liquid chromatography/electrospray ionization–tandem mass spectrometry (LC/ESI‐MS/MS): synthesis of derivatization reagents for carboxylic acids

The derivatization reagents for carboxylic acids, N‐(Pyridin‐3‐yl)hydrazinecarbothioamide, N‐[4‐(dimethylamino)phenyl]hydrazinecarbothioamide, 1‐(2‐aminoethyl)‐3‐(pyridin‐3‐yl)thiourea, 1‐(2‐aminoethyl)‐3‐[4‐(dimethylamino)phenyl]thiourea and 4‐(2‐aminoethyl)‐N‐phenylpiperazine‐1‐carbothioamide were synthesized. These reagents reacted with carboxylic acids at 60°C for 45 min in the presence of the condensation reagents. The generated derivatives were favorably separated on the reversed‐phase column and sensitively detected by electrospray ionization tandem mass spectrometry. These reagents enhanced the electrospray ionization response of the analyte and generated a particular product ion efficiently by collision‐induced dissociation, and thus they were suitable for MS/MS detection. Copyright © 2010 John Wiley & Sons, Ltd.     

Triggered single-photon emission and cross-correlation properties in InAlAs quantum dot

Triggered single-photon generation from InAlAs quantum dot (QD) was demonstrated for the first time. Emitted photon energy coincides with high detection efficiency range of Si single-photon detectors, which is highly suitable for free-space communication. Single-QD spectroscopy and crossed photon correlation measurements unambiguously revealed that several emitting lines observed in a single mesa structure originated from the identical QD, and two temporary competing decay processes associated with neutral states and charged states were identified. Presence of the competing process is also inferred from an analysis of steady-state photoluminescence intensities. Formation process of charged exciton in QD is also discussed.