In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria

The impact of lifestyle on shaping the genome content of an organism is a well-known phenomenon and cytochrome P450 enzymes (CYPs/P450s), heme-thiolate proteins that are ubiquitously present in organisms, are no exception. Recent studies focusing on a few bacterial species such as Streptomyces, Mycobacterium, Cyanobacteria and Firmicutes revealed that the impact of lifestyle affected the P450 repertoire in these species. However, this phenomenon needs to be understood in other bacterial species. We therefore performed genome data mining, annotation, phylogenetic analysis of P450s and their role in secondary metabolism in the bacterial class Gammaproteobacteria. Genome-wide data mining for P450s in 1261 Gammaproteobacterial species belonging to 161 genera revealed that only 169 species belonging to 41 genera have P450s. A total of 277 P450s found in 169 species grouped into 84 P450 families and 105 P450 subfamilies, where 38 new P450 families were found. Only 18% of P450s were found to be involved in secondary metabolism in Gammaproteobacterial species, as observed in Firmicutes as well. The pathogenic or commensal lifestyle of Gammaproteobacterial species influences them to such an extent that they have the lowest number of P450s compared to other bacterial species, indicating the impact of lifestyle on shaping the P450 repertoire. This study is the first report on comprehensive analysis of P450s in Gammaproteobacteria.     

Chemical Kinetics of Methane Pyrolysis in Microwave Plasma at Atmospheric Pressure

Results of chemical kinetics modeling in methane subjected to the microwave plasma at atmospheric pressure are presented in this paper. The reaction mechanism is based on the methane oxidation model without reactions involving nitrogen and oxygen. For the numerical calculations 0D and 1D models were created. 0D model uses Calorimetric Bomb Reactor whereas 1D model is constructed either as Plug Flow Reactor or as a chain of Plug Flow Reactor and Calorimetric Bomb Reactor. Both models explain experimental results and show the most important reactions responsible for the methane conversion and production of H₂, C₂H₂, C₂H₄ and C₂H₆ detected in the experiment. Main conclusion is that the chemical reactions in our experiment proceed by a thermal process and the products can be defined by considering thermodynamic equilibrium. Temperature characterizing the methane pyrolysis is 1,500–2,000 K, but plasma temperature is in the range of 4,000–5,700 K, which means that methane pyrolysis process is occurring outside the plasma region in the swirl gas flowing around the plasma.     

Ligandless,deep eutectic solvent‐based ultrasound‐assisted dispersive liquid‐liquid microextraction with solidification of the aqueous phase for preconcentration of lead,cadmium, cobalt and nickel in water samples

A green and efficient sample preparation method using a deep eutectic solvent‐based ultrasounds‐assisted dispersive liquid–liquid microextraction with solidification of the aqueous phase followed by high performance liquid chromatography analysis was developed for preconcentration and determination of heavy metals in environmental samples. In the proposed method, a novel, low density deep eutectic solvent was prepared by mixing trihexyl(tetradecyl)phosphonium chloride and thiosalicylic acid at a molar ratio of 1:2 and used both as an extractant and complexing agent. Ultrasound was used to disperse the extractant in the aqueous phase of the sample. Then, the phases were separated by centrifugation, after which the aqueous phase was frozen and the surface extractant phase was dissolved in a small volume of acetonitrile and subjected to liquid chromatographic analysis. The proposed method provided precisions (relative standard deviation, n = 5) in the range of 2.6–4.7%. The limit of detection were 0.05, 0.13, 0.06, and 0.11 µg/L for Pb(II), Cd(II), Co(II), Ni(II), respectively. The enhancement factors were equal to 154, 159, 162, and 158 for lead(II), cadmium(II), cobalt(II), and nickel(II), respectively. The accuracy of the proposed method was evaluated using certified reference materials (CA011b – hard drinking water, NIST 1643e – trace elements in water, TMRAIN‐04 – simulated rain sample).     

Solid phase synthesis of two muramyl pentapeptide derivatives

Solid phase peptide synthesis (SPPS) of two selected muramyl pentapeptide derivatives is described. The simplicity of removing the protecting groups via one-step deprotection and cleavage from the resin is the biggest advantage of SPPS. Using this method, two muramyl pentapeptide derivatives, D-MurN₃-L-Ala-D-iGlu-L-Lys-D-Ala-D-Ser (5) and D-MurN₃-L-Ala-D-iGlu-L-Lys-D-Ala-D-Ala (6), were obtained. Their chemical structures were confirmed by high-resolution mass spectrometry (HRMS) and nuclear magnetic resonance (NMR) spectroscopy. To determine the absolute configuration of the carbon atom in the side chain of the muramic acid derivative, single-crystal X-ray diffraction measurements were recorded.     

Static Headspace Sampling and Solid-Phase Microextraction for Assessment of Edible Oils Stability

Static headspace sampling and headspace solid-phase microextraction have been applied for the determination of the low molecular mass aldehydes—markers of edible oil oxidation. Preconcentration and determination conditions for the two procedures were optimized. LODs LOQs and repeatability of a standard mixture were established for all investigated compounds. Both methods of sampling were applied to the analysis of samples of rapeseed and sunflower oils. It appears that solid-phase microextraction is better than headspace sampling for the analysis of volatile oxidation products. Solid-phase microextraction can be conducted at a much lower temperature and has lower LOD values and better repeatability than headspace sampling.     

Microwave-assisted Cannizzaro reaction—Optimisation of reaction conditions

The microwave-assisted Cannizzaro reaction was studied in order to develop fully reproducible synthetic protocols for transformation of aldehydes to carboxylic acid and alcohols. Optimised were the following process parameters: power, temperature, and time. Aromatic, heteroaromatic and aliphatic aldehydes were used in the studies. It was found that furfural, thiophene-2-carbaldehyde, pyridinecarboxaldehyde and aromatic aldehydes react under mild conditions, while 1-methyl-pyrrole-2-carboxaldehyde derivatives and aliphatic aldehydes require more drastic reaction conditions and a longer exposure time to microwave radiation.     

Magnesium chloride modified with organoaluminium compounds as a support of the zirconocene catalyst for ethylene polymerisation

This work describes the influence of the modification of the MgCl₂(THF)₂ and MgCl₂ magnesium supports with the AlEt₂Cl, MAO, AlEt₃, AlMe₃, and AlEt₂Cl alkylaluminium compounds on heterogenisation of the bis(cyclopentadienyl) zirconium(IV) dichloride Cp₂ZrCl₂ catalyst. It was found that only the MgCl₂(THF)₂ support modified with AlEt₂Cl gave the heterogeneous catalyst. On the contrary, application of a magnesium carrier modified by AlEt₃, AlMe₃, and MAO compounds only results in a homogeneous zirconocene catalyst.     

Non‐centrosymmetric plasmonic crystals for second‐harmonic generation with controlled anisotropy and enhancement

Rectangular arrays of pyramidal recesses coated by silver film are investigated by means of polarization‐resolved nonlinear microscopy at 900 nm fundamental wavelength, demonstrating strong dependence of the dipole‐allowed SHG upon the lattice parameters. The plasmonic band gap causes nearly complete SHG suppression in arrays of 650 nm periodicity, whereas a sharp resonance at 550 nm periodicity is observed due to excitation of band edge Bloch states at fundamental frequency, accompanied by symmetry‐constrained interactions with similar modes at the second‐harmonic frequency. Additionally, coupling with modes at the bottom side of the silver film may lead to extraordinary optical transmission, opening a channel for SHG from the highly nonlinear GaAs substrate. Changing the lattice geometry enables SHG intensity modulation over three orders of magnitude, while the effective nonlinear anisotropy can be continuously switched between the two lattice directions, reaching values as high as ±0.96.