A concise synthesis of ortho-substituted aryl-acrylamides—potent activators of soluble guanylyl cyclase

Horner-Emmons reaction of phosphonate amides with aldehydes leads to generation of o-substituted aryl-acrylamides. These compounds have been shown to be useful to quickly establish structure-activity relationships (SAR) for soluble guanylyl cyclase (sGC) activator drug discovery.     

Zinc solid-state NMR spectroscopy of human carbonic anhydrase: implications for the enzymatic mechanism

The pH dependence of the (67)Zn solid-state nuclear magnetic resonance spectroscopy of human carbonic anhydrase (CAII) has been investigated to characterize the nature of the fourth ligand. CAII, through the Zn(2+)-bound hydroxide, catalyzes the deceptively simple reaction: CO(2) + H(2)O <==> HCO(3)(-) + H(+). The accepted mechanism for CAII would predict that water would be bound to the Zn(2+) at pH 5 and hydroxide would be bound at pH 8.5. The measured values for the electric field gradient (EFG) or quadrupole coupling constant (Cq) for CAII are independent of pH within the limits of the experimental error, i.e., 9.8 +/- 0.2 MHz. The EFG interaction has been predicted by ab initio electronic structure calculations for water and hydroxide bound to the zinc, including various levels of hydrogen bonding. After comparing the predicted Cq's with the experimental values, we conclude that the species present from pH 5-8.5 is the hydroxide form. The NMR data presented here is not consistent with the accepted mechanism for CAII. We show that the NMR data is consistent with an alternative mechanism of CAII.     

The multicomponent reactions and their libraries for natural and preparative chemistry

It was recently recognized that three different types of multi-component reactions (MCRs) exist. In preparative chemistry, the MCRs of type II form their products particularly efficiently. These reactions correspond to equilibria of educts and intermediate products, whose final products are formed practically irreversibly. In recent years, the four component reaction of the isocyanides (U-4CR) of type II and their unions with various reactions and MCRs have become an important industrial process for preparing products and their libraries. It has been demonstrated that all conceivable collections of U-4CR educts can be converted into the corresponding products. In the usual chemical reactions, only the substituents of the products can be varied, whereas the U-4CR and related reactions can also produce skeletally different types of products with diverse substituents. The preparative advantages of forming products by the one-pot MCRs and the great variety of the possible products are illustrated in this review.     

Equations describing lamellar structure parameters and melting points of polyethylene-<Emphasis Type="Italic">co</Emphasis>-(butene/octene)s

Time- and temperature-dependent SAXS-experiments were used to determine the effect of octene and butene co-units on the lamellar structure and the melting properties of polyethylene. As expected, melting points decrease with increasing co-unit content, but crystal thicknesses are not affected and depend on the crystallization temperature only. Results can be cast into some simple equations which describe the dependence:

Alkylation of olefins with “alkylpalladium acetates” lacking β hydrogen substituents. Observation of an intramolecular shift of an acetatopalladium group in neophylpalladium acetate

Methyl-, benzyl-, neopentyl- and (2-methyl-2-phenylpropyl)palladium acetates, prepared in situ by exchange reactions of the corresponding mercurials with palladium acetate, alkylate monosubstituted ethylene derivatives in fair to good yields. The “(2-methyl-2-phenylpropyl)palladium acetate” apparently underwent an unusual rearrangement during reaction with methyl acrylate. The palladium acetate group was partially transferred from the side-chain to the ortho position of the aromatic ring and produced methyl o-tert-butylcinnamate in 49% yield. The “normal product”, methyl 5-methyl-5-phenyl-2-hexenoate was also obtained, in 16% yield. A similar rearrangement occurred in the reaction with styrene.     

A tin-containing liquid crystalline polymer with two glass temperatures

A tin-containing liquid crystalline side group polymer was synthesized and characterized. Two glass transitions were detected by calorimetric investigations. The X-ray pattern corresponds to a smectic C order of the side groups and a disordered isotropic main chain. Dielectric measurements show two relaxation ranges which are influenced by the glass transitions and a fast local process. The low frequency mechanism can be related to the reorientation of the side groups and the higher glass transition temperature. The second is connected with the α-relaxation of the main chain and freezes in at lower temperatures.     

Characterization of Electron Transfer Dissociation in the Orbitrap Velos HCD Cell

Electron transfer dissociation (ETD) is commonly employed in ion traps utilizing rf fields that facilitate efficient electron transfer reactions. Here, we explore performing ETD in the HCD collision cell on an Orbitrap Velos instrument by applying a static DC gradient axially to the rods. This gradient enables simultaneous three dimensional, charge sign independent, trapping of cations and anions, initiating electron transfer reactions in the center of the HCD cell where oppositely charged ions clouds overlap. Here, we evaluate this mode of operation for a number of tryptic peptide populations and the top-down sequence analysis of ubiquitin. Our preliminary data show that performing ETD in the HCD cell provides similar fragmentation as ion trap-ETD but requires further optimization to match performance of ion trap-ETD.      

1-(1-Alkenyl)benzotriazoles: Novel α-Hydroxyacyl Anion Equivalents for the Synthesis of α-Hydroxy Ketones

α-Lithiated 1-(1-alkenyl)benzotriazoles, generated from the reactions of 1-(1-alkenyl)benzotriazoles with n-BuLi, react with a variety of electrophiles to afford α-substituted 1-(1-alkenyl)benzotriazoles which undergo epoxidation with m-CPBA followed by hydrolysis to give α-hydroxy ketones in good yields. Thus, 1-(1-alkenyl)benzotriazoles behave as α-hydroxyacyl anion equivalents.     

Boundaries of Mass Resolution in Native Mass Spectrometry

Over the last two decades, native mass spectrometry (MS) has emerged as a valuable tool to study intact proteins and noncovalent protein complexes. Studied experimental systems range from small-molecule (drug)–protein interactions, to nanomachineries such as the proteasome and ribosome, to even virus assembly. In native MS, ions attain high m/z values, requiring special mass analyzers for their detection. Depending on the particular mass analyzer used, instrumental mass resolution does often decrease at higher m/z but can still be above a couple of thousand at m/z 5000. However, the mass resolving power obtained on charge states of protein complexes in this m/z region is experimentally found to remain well below the inherent instrument resolution of the mass analyzers employed. Here, we inquire into reasons for this discrepancy and ask how native MS would benefit from higher instrumental mass resolution. To answer this question, we discuss advantages and shortcomings of mass analyzers used to study intact biomolecules and biomolecular complexes in their native state, and we review which other factors determine mass resolving power in native MS analyses. Recent examples from the literature are given to illustrate the current status and limitations.