Unambiguous Determination of the Absolute Configurations of Acetylene Alcohols by Combination of the <Emphasis Type="Italic">Sonogashira</Emphasis> Reaction and the CD Exciton Chirality Method – Exciton Coupling between Phenylacetylene and Benzoate Chromophores

Summary. The CD exciton chirality method was applied to various phenylacetylene alcohols to determine their absolute configurations; the long axis polarized –^* transition (_max=252nm) of the 4-methoxyphenylacetylene chromophore couples with the transition (_max=257nm) of the 4-methoxybenzoate group to generate intense exciton split CD Cotton effects, from the signs of which the absolute configurations of phenylacetylene alcohols were unambiguously determined. As an extension of the results, a new methodology for determining the absolute configurations of acetylene alcohols having the HCCCH(OH)-moiety by combination of the Sonogashira reaction and the CD exciton chirality method has been developed and applied. Since the –^* transition of acetylene triple bond is located below 180nm, it is difficult to observe ideal bisignate CD Cotton effects due to the exciton coupling between acetylene and benzoate chromophores. To observe the ideal exciton split Cotton effects necessary for the unambiguous determination of absolute configuration, the terminal acetylene group was converted, by the Sonogashira reaction, to the 4-methoxyphenylacetylene moiety, which exhibits an intense –^* absorption band polarized along the long axis of the chromophore at 252nm. As a partner of exciton coupling, 4-methoxybenzoate showing a –^* band at 257nm was introduced into the alcohol moiety, and the benzoates formed showed intense bisignate CD Cotton effects, from the signs of which the absolute configurations of original acetylene alcohols could be determined in an unambiguous manner.     

Thermotropic liquid-crystalline peptide derivatives: oligo(glutamic acid)s forming hydrogen-bonded columns

We report on new thermotropic liquid-crystalline oligo(amino acid) derivatives forming columnar structures. These are based on branched oligo(glutamic acid)s and 2-(3,4-dialkyloxyphenyl)ethyl moieties. An oligo(glutamic acid) derivative, alpha,gamma-bis(L-glutamoyl) L-glutamic acid tetra[2-(3,4-dioctadecyloxyphenyl)ethyl]ester, shows a hexagonal columnar phase, whilst a glutamic acid derivative, alpha,gamma-bis[2-(3,4-dioctadecyloxyphenyl)ethyl] L-glutamate, does not show a mesophase. Hydrogen bonds formed by the oligo(glutamic acid) moieties should contribute to the induction of the columnar liquid-crystalline properties. In addition, we have examined the effects of the molecular chirality of the oligo(glutamic acid) parts and the functionalisation at the focal position of the taper shaped molecules on the liquid-crystalline properties of the compounds.     

Automated DNA fragment collection by capillary array gel electrophoresis in search of differentially expressed genes

An automatic DNA fragment collector using capillary array gel electrophoresis has been developed. A sheath flow technique is used for not only detection but also collection of DNA fragments. In a sheath flow cell, the DNA fragments separated by 16 capillaries flow independently into corresponding sampling capillaries. The fraction collector consists of 16 sampling trays and each sampling tray is set beneath each end of the sampling capillaries to collect the flow-through DNA fragments. Certain DNA fragments are automatically sorted by controlling the movement of the sampling trays according to the signals from the system. The collector experimentally separated two mixtures of polymerase chain reaction (PCR) products: one prepared by using eight different sizes (base lengths from 161 to 562) of DNAs; and the other prepared by a differential display (DD) method with cDNA fragments. Collected DNA fragments are amplified by PCR and measured by electrophoresis. DNA fragments with base length differences of one (base lengths 363 and 364) were successfully separated. A separated DNA fragment from the DD sample was also successfully sequenced. In addition, differentially expressed DNA fragments were automatically sorted by comparative analysis, in which two similar cDNA fragment groups, labeled by two different fluorophores, respectively, were analyzed in the same gel-filled capillary. These results show that the automatic DNA fragment collector is useful for gene hunting in research fields such as drug discovery and DNA diagnostics.     

Structural investigation of zeolite-templated, ordered microporous carbon by scanning tunneling microscopy and Raman spectroscopy

Scanning tunneling microscopy (STM) and Raman spectroscopy have been employed for a detailed structural characterization of an ordered microporous carbon synthesized in the nanochannels of zeolite Y by a templating approach. The carbon exhibited an exceptionally high adsorption capacity together with a long-range structural organization on the nanometer scale. As revealed by STM, this material exhibited both terrace-like and periodic (approximately 1.4 nm) stripe-like nanostructures. The vertical separation between contiguous terraces was measured to be also about 1.4 nm and was thus coincident with the structural periodicity deduced by X-ray diffraction. The terraces of the carbon material were shown to consist of arrays of approximately 1 nm wide carbon clusters. The carbon clusters displayed only a limited degree of local order within the terraces but not long-range periodicity. Likewise, STM indicated that the micropore structure of this carbon originated from the large number of voids that separate adjacent clusters, being morphologically very different from that commonly found in activated carbons. The range of void sizes measured by STM (0.8-2.3 nm) was in complete agreement with the pore size distribution determined from nitrogen adsorption measurements. The origin of the nanostructural features observed for this microporous carbon was discussed on the basis of the surface structure of the zeolite Y template. Finally, Raman spectroscopy provided evidence that the carbon clusters were made up of nanographenes with a curved topology.     

Remarkable effects of counter ions on scandium ion-promoted electron transfer reactions

Scandium ion-promoted electron transfer reactions of p-benzoquinone are remarkably accelerated when tetrakis(pentafluorophenyl)borate anion is used instead of trifluoromethanesulfonate anion as the counter anion of scandium ion. Only a catalytic amount of scandium borate salt (Sc[B(C6F5)4]3) accelerates significantly the Diels-Alder reaction of 9,10-dimethylanthracene with p-benzoquinone, which proceeds via Sc(3+)-promoted electron transfer from the anthracene to p-benzoquinone.     

Determination of molybdenum(VI) in natural water and rock by ion-exchange absorptiometry combined with flow analysis

Ion-exchange absorptiometry combined with flow analysis has been applied to the determination of trace amounts of molybdenum(VI) in natural water and rock. By using a pretreatment column packed with Sephadex G-25 gel, molybdenum(VI) in a sample solution can be sorbed selectively on the gel at pH 3.5. The molybdenum(VI) in the column was desorbed with EDTA as the molybdenum(VI)-EDTA complex, and the solution was introduced into a Tiron solution stream. The yellow complex formed between molybdenum(VI) and Tiron in the flow system was then concentrated on a QAE-Sephadex A-25 anion exchanger packed in a flow-through silica micro-cell. The attenuation of incident light by the molybdenum(VI)-Tiron complex on the anion exchanger in the cell was continuously recorded with a spectrophotometer at 410 nm. The complex on the anion exchanger was easily desorbed with sodium nitrate, so the flow-through cell could be used repeatedly. The minimum amount that could be detected corresponded to 15 ng of molybdenum(VI). Molybdenum(VI) in three or four sample solutions could be determined within 1 h.     

Mechanism of scandium ion catalyzed Diels-Alder reaction of anthracenes with methyl vinyl ketone

Rates of Diels-Alder cycloadditions of anthracenes with methyl vinyl ketone (MVK) are accelerated significantly by the presence of scandium triflate [Sc(OTf)3]. Sc(OTf)3 also promotes photoinduced electron-transfer reactions from various electron donors to MVK significantly. Comparison of the promoting effect of Sc(OTf)3 in photoinduced electron-transfer reactions of MVK with the catalytic effect of Sc(OTf)3 in the Diels-Alder reaction of 9,10-dimethylanthracene with MVK has revealed that the MVK-Sc(OTf)3 complex is a reactive intermediate in both the Diels-Alder and photoinduced electron-transfer reactions. The observed second-order rate constants of the Sc(OTf)3-catalyzed Diels-Alder reactions of anthracenes with MVK are by far larger than those expected from the observed linear Gibbs energy relation for the Diels-Alder reactions of anthracenes with stronger electron acceptors than MVK, which are known to proceed via electron transfer. This indicates that the Sc(OTf)3-catalyzed Diels-Alder reactions of anthracenes with MVK does not proceed via an electron-transfer process from anthracences to the MVK-Sc(OTf)3 complex.     

Scandium ion-promoted reduction of heterocyclic N=N double bond. Hydride transfer vs electron transfer

Hydride transfer from 10-methyl-9,10-dihydroacridine (AcrH(2)) to 3,6-diphenyl-1,2,4,5-tetrazine (Ph(2)Tz), which contains a N=N double bond, occurs efficiently in the presence of Sc(OTf)(3) (OTf = OSO(2)CF(3)) in deaerated acetonitrile (MeCN) at 298 K, whereas no reaction occurs in the absence of Sc(3+). The observed second-order rate constant (k(obs)) increases with increasing Sc(3+) concentration to approach a limited value. When AcrH(2) is replaced by the dideuterated compound (AcrD(2)), the rate of Sc(3+)-promoted hydride transfer exhibits the same primary kinetic isotope effect (k(H)/k(D) = 5.2+/-0.2), irrespective of Sc(3+) concentration. Scandium ion also promotes an electron transfer from CoTPP (TPP(2)(-) = tetraphenylporphyrin dianion) and 10,10'-dimethyl-9,9'-biacridine [(AcrH)(2)] to Ph(2)Tz, whereas no electron transfer from CoTPP or (AcrH)(2) to Ph(2)Tz occurs in the absence of Sc(3+). In each case, the observed second-order rate constant of electron transfer (k(et)) shows a first-order dependence on [Sc(3+)] at low concentrations and a second-order dependence at higher concentrations. Such dependence of k(et) on [Sc(3+)] is ascribed to formation of 1:1 and 1:2 complexes between Ph(2)Tz(*)(-) and Sc(3+) at the low and high concentrations of Sc(3+), respectively, which results in acceleration of the rate of electron transfer. The formation of 1:2 complex has been confirmed by the ESR spectrum in which the hyperfine structure is different from that of free Ph(2)Tz(*)(-). The 1:2 complex formation results in the saturated kinetic dependence of k(obs) on [Sc(3+)] for the Sc(3+)-promoted hydride transfer, which proceeds via Sc(3+)-promoted electron transfer from AcrH(2) to Ph(2)Tz, followed by proton transfer from AcrH(2)(*)(+) to the 1:1 Ph(2)Tz(*)(-)-Sc(3+) complex and the subsequent facile electron transfer from AcrH(*) to Ph(2)TzH(*). The effects of counteranions on the Sc(3+)-promoted electron transfer and hydride transfer reactions are also reported.     

Nanostructure of a "carpet"-like dense layer/polyelectrolyte brush layer in a block copolymer monolayer at the air-water interface

The "carpet"/brush double layer structure in the polyelectrolyte layer in the amphiphilic diblock copolymer monolayer at the air-water interface was quantitatively studied by in situ neutron reflectometry in addition to X-ray reflectivity measurements. As a result of the higher contrast between polyelectrolyte [poly(methacrylic acid)] and solvent (D(2)O) for the neutron, the brush structure could be estimated more accurately as a function of surface pressure, that is, brush density. The thickness of the carpet layer, which is thought to be formed to reduce the interfacial free energy between water and the hydrophobic layer, was almost constant at 10-20 A at any surface pressure studied. Growth was clearly observed in the whole brush length with increasing surface pressure, and it was estimated to be almost 60% of the full-stretch length of the ionic polymer chain. Furthermore, by the comparison of density profiles by neutron and X-ray reflectometry, an anomalous hydration was suggested.     

Quantum Chemical Calculations on the Structure and Adsorption Properties of NO and N2O on Ag+ and Cu+ Ion-Exchanged Zeolites

Ab initio cluster quantum chemical calculations at the Hartree–Fock (HF/Lanl2dz) and correlated second-order Moller–Plesset perturbation theory (MP2/Lanl2dz) levels were performed for NO and N₂O interactions with Ag⁺ and Cu⁺ ion-exchanged zeolites. The interaction energies were estimated in a conventional way and also corrected for basis set superposition errors. It was shown that the highly dispersed Ag⁺ counterions establish twofold coordination to the lattice oxygens on the zeolite surface, similar to the case of Cu⁺ ions. However, both NO and N₂O bind relatively strongly to the Cu active sites of Cu⁺ ion-exchanged zeolites than those of the Ag⁺ site of the Ag⁺ ion-exchanged zeolites. Based on the results of these calculations, the two different forms of adsorption for these molecules on the catalyst surface, the nature of their binding and characteristics of the adsorption properties have been discussed. Finally, some comparisons with the results obtained by a variety of density functional theory calculations on target systems have been presented.