Stereochemical recognition of doubly functional aminotransferase in 2-deoxystreptamine biosynthesis

The doubly functional aminotransferase BtrS in the 2-deoxystreptamine (DOS) biosynthesis, in which two transaminations are involved, was characterized by a genetic as well as a chemical approach with the heterologously expressed enzyme. The gene disruption study clearly showed that BtrS is involved, in addition to the previously confirmed first transamination, in the second transamination as well. This dual function of BtrS for the DOS biosynthesis was further confirmed by the structural determination of the reverse reaction product from DOS. Enantiospecific formation of the reverse reaction product from DOS clearly showed that BtrS distinguishes the enantiotopic amino groups of DOS, but in contrast, both enantiomers of 2-deoxy-scyllo-inosose (DOI) were efficiently accepted by BtrS to give a racemic product. This unique stereochemical recognition of DOI chirality and DOS prochirality by BtrS is mechanistically explained by a specific hydrogen-bond donating force in the enzyme active site as a particular feature of this doubly functional enzyme.     

The birch reduction of heterocyclic compounds. 11. Birch reduction and reductive alkylation of furamides

The Birch reduction-alkylation of some N,N-dialkylfuramides and its application to the useful intermediates for the natural product synthesis are described.     

Electrostatic potential screened by a two-dimensional electron system: a real-space observation by scanning-tunneling spectroscopy

Scanning-tunneling spectroscopy at 5 K was used to investigate the electrostatic potential profile on the Si(111)-square root of 3 x square root of 3 Ag surface at subnanometer spatial resolution. The potential was measured from an energy-level shift of electronic states on the surface. The potential images obtained reveal that the potential drops around the steps and Ag adsorbates, upon which positive charges are presumably accumulated. The profiles of the reduced potentials are explained with the screening of potential due to the charges by two-dimensional electron gas (2DEG) existing on the surface. The Friedel oscillation, which results from the screening and has a period of the half Fermi wavelength of the 2DEG, was also observed in the potential images.     

Synthesis of bis(azafulvene)s by dehydration of hydroxymethylpyrrole derivatives

Bis(azafulvene) was isolated in 55% yield by the reaction of 4 equivalents of phenyllithium with 5,5'-diformyl-3,3',4,4'-tetraethyl-2,2'-bipyrrole followed by quenching with acetic anhydride. Unstable bis(azafulvene)s were obtained in much higher yields by dehydrating 5,5'-bis(hydroxymethyl) derivatives of 2,2'-bipyrrole and gem-dimethyl-2,2'-dipyrrylmethane with (Boc)2O-DMAP at room temperature. X-Ray crystallography of two bis(azafulvene)s is reported.     

Effect of tetrabutylphosphonium cation on the physico-chemical properties of amino-acid ionic liquids

Tetraalkylphosphonium-based amino-acid ionic liquids show lower viscosities and higher decomposition temperatures (>300 degrees C) than previously reported ammonium-based amino-acid ionic liquids.     

Justification shift and uncertainty: why are low-probability near misses underrated against organizational routines?

Knowledge of near misses is helpful in preventing accidents, but it does not always lead to changes in organizational routines or contribute to accident prevention. In this article, the authors argue that low-probability near misses reinforce beliefs of experts and professionals in existing routines, proposing a concept of justification shift. Justification shift is underestimation of risks of known near misses vis-à-vis overestimation of reliabilities of existing routines. Consequently, signals of “close calls” tend to be disregarded, and accidents become more likely. When justification shift occurs, experts and professionals who want changes in routines face burden of proof about risks of those routines. Uncertainty in requirements and data may increase the burden and make justification shift more likely. To explore how justification shift occurs and how uncertainty influences the shift, the authors have developed an agent-based model based on theories in organizational studies and the case of the space shuttle Challenger accident in 1986. From the simulation using the model, it becomes clear that uncertainty does not make a difference in frequencies and degrees of justification shift. The authors also discuss implications of this finding to efforts to utilize knowledge of near misses and to further research on the efforts and organizational decisions.     

Fluorescence Properties and Exciplex Formation of Emissive Naphthyridine Derivatives: Application as Sensors for Amines

Water-soluble donor–acceptor-type fluorophore 15Nap-Cl having two trifluoromethyl groups and a Cl group on a 1,5-aminonaphthyridine framework was prepared. Fluorophore 15Nap-Cl showed strong solvatochromic fluorescence, and, as the solvent polarity increased, a bathochromic shift was observed accompanied by an increase in the fluorescence quantum yield. In addition, in the presence of amines such as ethylamine, diethylamine, and aniline, further considerable bathochromic shifts in the fluorescence were observed. Density functional calculations identified the source of the fluorescence behavior as exciplex formation between 15-Nap-Cl and the corresponding amine. The fluorescence behavior was exploited to fabricate a sensor that can identify various primary, secondary, and tertiary amines.     

Selective recognition and electrochemical sensing of dopamine using a ferrocene-based heteroditopic receptor

A redox-active ferrocene-based heteroditopic receptor bearing a boronic acid (as a catechol recognition site) and a benzo-18-crown-6-ether unit (as an ammonium ion recognition site) was synthesized. A 1:1 ditopic complex with dopamine was evidenced by mass spectrometry and NMR spectroscopy. Cyclic voltammetry measurements on the receptor in the presence of a series of organic guest species demonstrated the successful electrochemical sensing of dopamine through a distinct change in the ferrocene-centred redox-couple upon complex formation.     

Isotope exchange between iron(II or III) hydroxide and HTO water in the equilibrium state

Observing the OT-for-OH exchange reaction between iron(II or III) hydroxide and tritiated water (HTO) leads to the following results: (1) isotope exchange as atomic group occurred between the OH group in each iron hydroxide (i.e., Fe(OH)₂ or Fe(OH)₃) and OT^– resulted from the dissociation of HTO; (2) the ratio of the reactivity of the hydroxides is roughly [iron(III) hydroxide]: [iron(II) hydroxide]=1.21.0 and the result is related to a difference in electronegativity between Fe²⁺ and Fe³⁺. (In other words, if the reactivity depends on the number of the charge, the ratio should be 1.51.0).     

Materials Space-Tectonics: Atomic-level Compositional and Spatial Control Methodologies for Synthesis of Future Materials

Reactions occurring at surfaces and interfaces necessitate the creation of well-designed surface and interfacial structures. To achieve a combination of bulk material (i.e., framework) and void spaces, a meticulous process of “nano-architecting” of the available space is necessary. Conventional porous materials such as mesoporous silica, zeolites, and metal–organic frameworks lack advanced cooperative functionalities owing to their largely monotonous pore geometries and limited conductivities. To overcome these limitations and develop functional structures with surface-specific functions, the novel materials space-tectonics methodology has been proposed for future materials synthesis. This review summarizes recent examples of materials synthesis based on designing building blocks (i.e., tectons) and their hybridization, along with practical guidelines for implementing materials syntheses and state-of-the-art examples of practical applications. Lastly, the potential integration of materials space-tectonics with emerging technologies, such as materials informatics, is discussed.