ChemStable: a web server for rule-embedded naïve Bayesian learning approach to predict compound stability

Predicting compound chemical stability is important because unstable compounds can lead to either false positive or to false negative conclusions in bioassays. Experimental data (COMDECOM) measured from DMSO/H₂O solutions stored at 50 °C for 105 days were used to predicted stability by applying rule-embedded naïve Bayesian learning, based upon atom center fragment (ACF) features. To build the naïve Bayesian classifier, we derived ACF features from 9,746 compounds in the COMDECOM dataset. By recursively applying naïve Bayesian learning from the data set, each ACF is assigned with an expected stable probability (p _s ) and an unstable probability (p _uns ). 13,340 ACFs, together with their p _s and p _uns data, were stored in a knowledge base for use by the Bayesian classifier. For a given compound, its ACFs were derived from its structure connection table with the same protocol used to drive ACFs from the training data. Then, the Bayesian classifier assigned p _s and p _uns values to the compound ACFs by a structural pattern recognition algorithm, which was implemented in-house. Compound instability is calculated, with Bayes’ theorem, based upon the p _s and p _uns values of the compound ACFs. We were able to achieve performance with an AUC value of 84 % and a tenfold cross validation accuracy of 76.5 %. To reduce false negatives, a rule-based approach has been embedded in the classifier. The rule-based module allows the program to improve its predictivity by expanding its compound instability knowledge base, thus further reducing the possibility of false negatives. To our knowledge, this is the first in silico prediction service for the prediction of the stabilities of organic compounds.     

苏丹红猝灭吖啶染料荧光的动力学研究

在体积分数95%乙醇介质中,吖啶黄、吖啶橙的荧光发射波长与苏丹红染料的吸收波长十分接近。实验数据表明,随着苏丹红I~IV用量的增加,溶液中吖啶黄、吖啶橙荧光发射强度明显降低,其荧光猝灭程度与苏丹红用量成正比。动力学研究表明苏丹红I,II与吖啶黄或吖啶橙之间可形成非共价复合物,从而发生静态荧光猝灭;而苏丹红III,IV猝灭吖啶黄或吖啶橙则表现为一种复杂的动力学特点,可能同时存在静态荧光猝灭与动态猝灭。     

两种异马来二氰基二硫烯镍(II)-取代苄基喹啉鎓盐的制备及其光谱性质和晶体结构

以甲醇为溶剂,将异马来二氰基二硫烯酸钾[K2(i-mnt)]和六水氯化镍分别与溴化4-溴苄基喹啉盐([4-BrBzQl]Br)或溴化4-硝基苄基喹啉盐([4-NO2BzQl]Br)直接反应,得到两种新的离子对配合物[4-BrBzQl]2[Ni(i-mnt)2](1)和[4-NO2BzQl]2[Ni(i-mnt)2](2);测定了其红外光谱和紫外-可见光谱,并利用X射线衍射表征了配合物1的晶体结构.结果表明,配合物[4-BrBzQl]2[Ni(i-mnt)2]为三斜晶系,P-1空间群,其每个不对称单元含半个[Ni(i-mnt)2]2-阴离子和1个[4-BrBzQl]+阳离子,晶体中的阴、阳离子通过静电作用和C-H…S、C-H…N氢键作用形成网络结构.     

HPLC–MS/MS法测定南美白对虾苗中硝基呋喃类代谢物残留

研究了南美白对虾苗中4种硝基呋喃代谢物呋喃唑酮代谢物(AOZ)、呋喃它酮代谢物(AMOZ)、呋喃妥因代谢物(AHD)、呋喃西林代谢物(SEM)的高效液相色谱–串联质谱(HPLC–MS/MS)测定方法。以水解衍生并添加4种同位素内标的方法对样品进行处理,补偿了衍生化效率,提高了定量的准确性。实验结果表明,AOZ,AMOZ的检出限为0.10μg/kg,SEM,AHD的检出限为0.25μg/kg;AOZ,AMOZ的定量下限为0.40μg/kg,SEM,AHD的定量下限为0.50μg/kg。方法加标回收率在88.2%~97.6%之间,相对标准偏差在4.6%~8.1%(n=6)之间。该法检测灵敏度高,测量结果的精密度和准确度满足药物残留检测要求。     

Droplet Precise Self-Splitting on Patterned Adhesive Surfaces for Simultaneous Multidetection

Precise separation and localization of microdroplets are fundamental for various fields, such as high-throughput screening, combinatorial chemistry, and the recognition of complex analytes. We have developed a droplet self-splitting strategy to divide an impacting droplet into predictable microdroplets and deposit them at preset spots for simultaneous multidetection. No matter exchange was observed between these microdroplets, so they could be manipulated independently. Droplet self-splitting was attributed to anisotropic liquid recoiling on the patterned adhesive surface, as influenced by the droplet Weber number and the width of the low-adhesive stripe. A quantitative criterion was also developed to judge the droplet self-splitting capability. The precise separation and distribution of microdroplets enabled simultaneous arrayed reactions and multiple analyte detection using one droplet of sample.     

Accessing Tunable Afterglows from Highly Twisted Nonaromatic Organic AIEgens via Effective Through-Space Conjugation

Nonaromatic, cross-conjugated, and highly twisted luminogens consisting of acylated succinimides demonstrate aggregation-induced emission characteristics along with tunable multicolor photoluminescence and afterglows in their single crystals. Effective through-space conjugation among different moieties bearing n/π electrons promote the spin–orbit coupling and intersystem crossing and lead to diverse emissive clusters with concurrently rigidified conformations, thus allowing readily tunable emissions. Derived from it, the proof-of-concept application for advanced anti-counterfeiting is illustrated. These results should spur the rational design of novel nonaromatic AIEgens, and moreover advance understandings of the non-traditional intrinsic luminescence and the origin of tunable multicolor afterglows.     

Single-Atom Iron Catalysts on Overhang-Eave Carbon Cages for High-Performance Oxygen Reduction Reaction

Single-atom catalysts have drawn great attention, especially in electrocatalysis. However, most of previous works focus on the enhanced catalytic properties via improving metal loading. Engineering morphologies of catalysts to facilitate mass transport through catalyst layers, thus increasing the utilization of each active site, is regarded as an appealing way for enhanced performance. Herein, we design an overhang-eave structure decorated with isolated single-atom iron sites via a silica-mediated MOF-templated approach for oxygen reduction reaction (ORR) catalysis. This catalyst demonstrates superior ORR performance in both alkaline and acidic electrolytes, comparable to the state-of-the-art Pt/C catalyst and superior to most precious-metal-free catalysts reported to date. This activity originates from its edge-rich structure, having more three-phase boundaries with enhanced mass transport of reactants to accessible single-atom iron sites (increasing the utilization of active sites), which verifies the practicability of such a synthetic approach.     

A Pressure-Induced Inverse Order–Disorder Transition in Double Perovskites

Given the consensus that pressure improves cation ordering in most of known materials, a discovery of pressure-induced disordering could require recognition of an order–disorder transition in solid-state physics/chemistry and geophysics. Double perovskites Y₂CoIrO₆ and Y₂CoRuO₆ polymorphs synthesized at 0, 6, and 15 GPa show B-site ordering, partial ordering, and disordering, respectively, accompanied by lattice compression and crystal structure alteration from monoclinic to orthorhombic symmetry. Correspondingly, the long-range ferrimagnetic ordering in the B-site ordered samples are gradually overwhelmed by B-site disorder. Theoretical calculations suggest that unusual unit-cell compressions under external pressures unexpectedly stabilize the disordered phases of Y₂CoIrO₆ and Y₂CoRuO₆.     

An E1-Catalyzed Chemoenzymatic Strategy to Isopeptide-N-Ethylated Deubiquitylase-Resistant Ubiquitin Probes

Triazole-based deubiquitylase (DUB)-resistant ubiquitin (Ub) probes have recently emerged as effective tools for the discovery of Ub chain-specific interactors in proteomic studies, but their structural diversity is limited. A new family of DUB-resistant Ub probes is reported based on isopeptide-N-ethylated dimeric or polymeric Ub chains, which can be efficiently prepared by a one-pot, ubiquitin-activating enzyme (E1)-catalyzed condensation reaction of recombinant Ub precursors to give various homotypic and even branched Ub probes at multi-milligram scale. Proteomic studies using label-free quantitative (LFQ) MS indicated that the isopeptide-N-ethylated Ub probes may complement the triazole-based probes in the study of Ub interactome. Our study highlights the utility of modern protein synthetic chemistry to develop structurally and new families of tool molecules needed for proteomic studies.     

Dysprosiacarboranes as Organometallic Single-Molecule Magnets

The dicarbollide ion, nido-C₂B₉H₁₁²⁻ is isoelectronic with cyclopentadienyl. Herein, we make dysprosiacarboranes, namely [(C₂B₉H₁₁)₂Ln(THF)₂][Na(THF)₅] (Ln=Dy, 1Dy ) and [(THF)₃(μ-H)₃Li]₂[{η⁵-C₆H₄(CH₂)₂C₂B₉H₉}Dy{η²:η⁵-C₆H₄(CH₂)₂C₂B₉H₉}₂Li] 3Dy and show that dicarbollide ligands impose strong magnetic axiality on the central Dy^III ion. The effective energy barrier (U_eff) for the loss of magnetization can be varied by the substitution pattern on the dicarbollide. This finding is demonstrated by comparing complexes of nido-C₂B₉H₁₁²⁻ and nido-[o-xylylene-C₂B₉H₉]²⁻, which show a U_eff of 430(5) K and 804(7) K, respectively. The blocking temperature defined by the open hysteresis temperature of 3Dy reaches 6.8 K. Moreover, the linear complex [Dy(C₂B₉H₁₁)₂]⁻ is predicted to have comparable properties with the linear [Dy(Cp^Me3)₂]⁺ complex. As such, carboranyl ligands and their derivatives may provide a new type of organometallic ligand for high-performance single-molecule magnets.