Cycloaddition reaction of 2-azadienes derived from beta-amino acids with electron-rich and electron-deficient alkenes and carbonyl compounds. Synthesis of pyridine and 1,3-oxazine derivatives

Functionalized keto-enamines 6 were obtained by nucleophilic addition of enol ethers to the imine moiety of 2-azadienes derived from dehydroaspartic esters 4. Reactions of 2-azadiene 4c containing three electron-withdrawing substituents (CO(2)R) with enol ethers 5 in the presence of lithium perchlorate led to the formation of tetrahydropyridine derivatives 7 in a regio- and stereoselective fashion. 2H-[1,3]-oxazines 10 and pyridine derivatives 12 and 13 were obtained by heterocycloaddition reactions of electron-poor azadienes 4d-g containing two electron-withdrawing substituents (4-O(2)N-C(6)H(4), CO(2)R) in positions 1 and 4 with carbonyl derivatives (ethyl glyoxalate 9a and diethyl ketomalonate 9b) and the electron-deficient olefin tetracyanoethylene 11.     

Conformational selection of glycomimetics at enzyme catalytic sites: experimental demonstration of the binding of distinct high-energy distorted conformations of C-, S-, and O-glycosides by E. Coli beta-galactosidases

We show that the conformational features of the molecular complexes of E. coli beta-galactosidase and O-glycosides may differ from those formed with closely related compounds in their chemical nature, such as C- and S-glycosyl analogues. In the particular case presented here, NMR and ab initio quantum mechanical results show that the 3D-shapes of the ligand/inhibitor within the enzyme binding site depend on the chemical nature of the compounds. In fact, they depend on the relative size of the stereoelectronic barriers for chair deformation or for rotation around Phi glycosidic linkage.     

Study of color and structural changes in silver painted medieval glasses

Silver was introduced into medieval glass by an ancient painting process using different clay minerals (ochre, illitic, montmorillonitic, and kaolinitic clays). The colorimetric properties, studied by UV-Vis spectroscopy, were dependent on the clay mineral as a result of different concentration of Ag ions diffused into the glass surface. TEM results showed the well known formation of silver nanoclusters which give the yellow coloration of the glass. The obtained results showed that clay properties such as specific surface area, pore volume and iron concentration (Fe₂O₃), are important factors that affect the yellow coloration. It is also observed that Fe₂O₃ acts as an oxidant agent for silver atoms providing the Ag₂O formation. This oxide cannot diffuse into the glass structure and avoid the ion-exchanged process. After Ag ion diffusion some structural changes occur in the glass as it has been shown by Raman spectroscopy. It is observed that the diffusion process leads to depolymerization of the glass network as it is determined by analyzing the Qⁿ components of Raman spectra. Two Raman bands at 148 and 244 cm⁻¹ assigned to Ag-O bonds can be associated to the presence of Ag₂O on the glass painted surface.     

Precise protein solubility determination by Laser confocal differential interference contrast microscopy

We describe a method for precisely measuring the solubility of proteins in aqueous solution using laser confocal differential interference contrast microscopy. The method is based on the in situ observation of single steps on a protein crystal surface which allows a fast and precise determination of solubility as a function of temperature. To demonstrate the effectiveness of this novel approach the solubility dependence on temperature of glucose isomerase and hen egg white lysozyme was determined with a precision of ±0.5 °C or smaller. It was found that a small amount of impurities did not significantly change the obtained solubility data. Numerical values for enthalpies and entropies of crystallization were calculated and they compare well to previously reported values but the experimental errors were significantly reduced.     

The molecular structure of 3(5)-methyl-4,5(3)-trimethylenepyrazole hydrochloride and its13C and15N NMR spectroscopy

The title compound (C₇N₂H₁₀, HC1, 1/2H₂O) crystallizes in the space groupC2/c with cell parameters:a=11.651(9),b=16.309(1),c=9.167(1)Å,=94.95(3)°,Z=8, withd=1.287 g cm^–3. One of the chlorine atoms lies on a twofold axis, the second and the oxygen atom of the water molecule have disordered positions. Intermolecular interactions through hydrogen bonds are established between nitrogen atoms of the pyrazole ring and chlorine atoms or the water molecule. In this way, chains of molecules are built; these chains, through van der Waals interactions, form layers which are stacked in the a direction. The¹H,¹³C, and¹⁵N NMR (this last using the double labelled compound) have been recorded in solution and the¹³C NMR spectrum also in the solid state (CP/MAS technique). The NMR parameters ( andJ's) thus obtained are discussed using the molecular structure.     

Effects of classical nonlinear resonances in grazing diatom-surface collisions

Energy transfer between vibrational, rotational, and translational degrees of freedom of a molecule during a collision process is enhanced when the classical frequencies associated with the initial state are in the proximity of nonlinear resonance conditions. We present an analysis of the classical resonant effects in the collisions of light diatoms with periodic surfaces, and discuss the initial conditions in which these effects can be observed. In particular, we find that for grazing incidence and resonant initial values of the classical frequencies, corresponding to specific vibro-rotational molecular states and translational energies, an efficient energy transfer between the intramolecular vibro-rotational degrees of freedom and the translational degree of freedom along a symmetry direction on the surface can be found. This efficient energy transfer manifests itself in the emergence of specific peaks in the molecular diffraction patterns. The predictions of the resonance analysis are contrasted with the results of classical trajectory calculations obtained in a diatom-rigid surface collision model.     

Estimation of the aggregation number and core radius of microemulsions

Summary A simple working method for the estimation of the aggregation numbers and core radii from weight measurements of sodium bis-2-ethylhexylsulphosuccinate (aerosol-OT orAOT)/decane/water microemulsions of several compositions is proposed.Starting out from the hypotheses that (i) the density of the water inside the droplets is the same as that of free water, (ii) all the surfactant is localized as interface, and (iii) the penetration of the organic phase into the interface is negligible, values for the aggregation number and core radii comparable to those determined using more sophisticated methods were obtained.The results/methodological simplicity ratio may be of great advantage in kinetic work on reaction mechanisms in microemulsions.

---

Abschätzung von Aggregationszahl und Radius von Mikroemulsionen

Zusammenfassung Es wird eine einfache Methode zur Abschätzung von Aggregationszahl und Core-Radius von Mikroemulsionen aus Gewichtsmessungen von Natriumbis-2-ethylhexylsulphosuccinat (aerosol-OT oderAOT)/Decan/Wasser-Mikroemulsionen verschiedener Zusammensetzung vorgeschlagen. Unter den Annahmen, daß (i) die Dichte von Wasser innerhalb der Aggregationen die gleiche als bei freiem Wasser ist, (ii) das ganze Emulsionsmittel in der Grenzfläche vorliegt und (iii) das Eindringen der organischen Phase in die Grenzfläche vernachlässigbar ist, können Werte für Aggregationszahlen und Core-Radien erhalten werden, die durchaus mit entsprechenden Werten aus aufwendigeren Methoden vergleichbar sind. Das Leistungsverhältnis (Ergebnisse/geringer Aufwand) ist sehr vorteilhaft und macht die Methode für kinetische Arbeiten zur Bestimmung von Reaktionsmechanismen in Mikroemulsionen interessant.

     

The impact of blood on liver metabolite profiling – a combined metabolomic and proteomic approach

Metabolomics has entered the well‐established omic sciences as it is an indispensable information resource to achieve a global picture of biological systems. The aim of the present study was to estimate the influence of blood removal from mice liver as part of sample preparation for metabolomic and proteomic studies. For this purpose, perfused mice liver tissue (i.e. with blood removed) and unperfused mice liver tissue (i.e. containing blood) were compared by two‐dimensional gas chromatography time of flight mass spectrometry (GC × GC‐TOFMS) for the metabolomic part, and by liquid chromatography tandem mass spectrometry (LC‐MS/MS) for the proteomic part. Our data showed significant differences between the unperfused and perfused liver tissue samples. Furthermore, we also observed an overlap of blood and tissue metabolite profiles in our data, suggesting that the perfusion of liver tissue prior to analysis is beneficial for an accurate metabolic profile of this organ. Copyright © 2013 John Wiley & Sons, Ltd.