Toward the characterization of peptidoglycan structure and protein-peptidoglycan interactions by solid-state NMR spectroscopy

Solid-state NMR spectroscopy is applied to intact peptidoglycan sacculi of the Gram-negative bacterium Escherichia coli. High-quality solid-state NMR spectra allow atom-resolved investigation of the peptidoglycan structure and dynamics as well as the study of protein-peptidoglycan interactions.     

A Dicobalt Complex with an Unsymmetrical Quinonoid Bridge Isolated in Three Units of Charge: A Combined Structural, (Spectro)electrochemical,Magnetic and Spectroscopic Study

Quinonoid ligands are excellent bridges for generating redox‐rich dinuclear assemblies. A large majority of these bridges are symmetrically substituted, with examples of unsymmetrically substituted quinonoid bridges being extremely rare. We present here a dicobalt complex in its various redox states with an unsymmetrically substituted quinonoid bridging ligand. Two homovalent forms and one mixed‐valent form have been isolated and characterized by single crystal X‐ray diffraction. The complex displays a large comproportionation constant for the mixed‐valent state which is three orders of magnitude higher than that observed for the analogous complex with a symmetrically substituted bridge. Results from electrochemistry, UV/Vis/NIR spectroelectrochemistry, SQUID magnetometry, multi‐frequency EPR spectroscopy and FIR spectroscopy are used to probe the electronic structures of these complexes. FIR provides direct evidence of exchange coupling. The results presented here display the advantages of using an unsymmetrically substituted bridge: site specific redox chemistry, high thermodynamic stabilization of the mixed‐valent form, isolation and crystallization of various redox forms of the complex. This work represents an important step on the way to generating heterodinuclear complexes for use in cooperative catalysis.     

On the determination of the structure and tension of the interface between a fluid and a curved hard wall

The structure and tension of the interface between a fluid and a spherically shaped hard wall are studied theoretically. The authors show the equivalence of different expressions for the surface tension and Tolman length using the squared-gradient model and density functional theory with a nonlocal, integral expression for the interaction between molecules. Even though both these models yield equilibrium density profiles that do not satisfy the wall theorem, they still obey the basic requirement of mechanical equilibrium. The authors trace back the origin of the difference between these two observations to the (lack of) continuity of the cavity function at the hard wall.     

Interfacial properties of colloid-polymer mixtures

Density functional theory and a virial approach are used to calculate the surface tension and bending rigidity of the interface between demixed fluid phases for a colloid-polymer mixture. The calculated surface tension compares well with results from computers simulations and experiments. The bending rigidity obtained from both theoretical approaches is negative (approximately equal to -0.1k(B)T), its magnitude increases away from the critical point and it is in reasonable agreement with computer simulations.     

Transition metal salts of 2-amino-3,5-dihalopyridine - dimers: syntheses,structures and magnetic properties of (3,5-diCAPH)2Cu2Br6 and (3,5-diBAPH)2Cu2X6

Three dimeric copper(II) complexes have been prepared with the general formula bis(2-amino-3,5-dihalopyridinium)hexahalodicuprate cuprate(II): (3,5-diCAPH)₂Cu₂Br₆ (1), (3,5-diBAPH)₂Cu₂Cl₆ (2) and (3,5-diBAPH)₂Cu₂Br₆ (3) [3,5-diCAPH = 2-amino-3,5-dichloropyridinium; 3,5-diBAPH = 2-amino-3,5-dibromopyridinium]. The compounds have been characterized via single crystal X-ray diffraction and temperature dependent magnetic susceptibility measurements. All three compounds crystallize in monoclinic space groups (1, C2/c; 2 and 3, P2₁/c) and exhibit alternating layers of hexahalodicuprate ions and organic cations. The hexahalodicuprate ions exhibit short X?Cu and X?X contacts which link the dimers into a square array. Variable temperature magnetic susceptibility data reveal strong intradimer antiferromagnetic exchange (J = ?153, ?65, ?122 K for 1–3, respectively), but negligible inter-dimer magnetic exchange.     

Development of an integrated informatics toolbox: HT kinetic and virtual screening

We discuss thoroughly aspects and issues for the development of a bespoke, but generic, electronic infrastructure designed to cope with the dynamic in high-throughput experimentation and knowledge management, is applicable to large or contract research organizations. We present the first generation of an informatics platform developed for TOPCOMBI, a research project funded by the European Commission for Nanotechnology and Nanoscience. It is composed by an infrastructure and a collection of modules dealing with laboratory analytics, robotics, data handling and analytics, optimization, in-database processing and visualization, which are developed collegially by the partners of the Consortium. This best-of-breed informatics system enables the capture and the re-usage of processes and methodologies, i.e. process and data flows, using the workflow paradigm. Complex workflows designed by power users can be eventually used by either other domain experts or by novices through a web portal. Workflows can also be run interactively to allow visual analytics for instance, or automatically. We present two case studies dealing with the kinetic study of glycerol catalytic oxidation using parallel equipments, and a novel, fully integrated QSAR applied in heterogeneous catalysis, respectively.     

Rouse dynamics of colloids bound to polymer networks

We present experimental evidence of a transition in the short-time Brownian motion of colloids from diffusive to subdiffusive, Rouse-like. This transition is seen for particles that are bound, through physical adsorption, to transient polymer networks. The characteristic Rouse scaling of the mean square particle displacement with radical t, found in the experiments, is rationalized using an analytical bead-spring model of a large particle anchored to a set of polymer chains.     

A note on the integrality gap of an ILP formulation for the periodic maintenance problem

We address the integrality gap of the integer linear program introduced by Grigoriev et al. (2006) [3] for the periodic maintenance problem. We prove that the integrality gap of this program is bounded by a constant.     

Toward a computational tool predicting the stereochemical outcome of asymmetric reactions: development of the molecular mechanics-based program ACE and application to asymmetric epoxidation reactions

The development and application of ACE, a program that predicts the stereochemical outcome of asymmetric reactions is presented. As major implementations, ACE includes a genetic algorithm to carry out an efficient global conformational search combined with a conjugate gradient minimization routine for local optimization and a corner flap algorithm to search ring conformations. Further improvements have been made that enable ACE to generate Boltzmann populations of conformations, to investigate highly asynchronous reactions, to compute fluctuating partial atomic charges and solvation energy and to automatically construct reactants and products from libraries of catalysts and substrates. Validation on previously investigated reactions (asymmetric Diels Alder cycloadditions and organocatalyzed aldol reactions) followed by application to a number of alkene epoxidation reactions and a comparative study of DFT-derived and ACE-derived predictions demonstrate the accuracy and usefulness of ACE in the context of asymmetric catalyst design.     

Chromium(III) stars and butterflies: synthesis, structural and magnetic studies of tetrametallic clusters

We report the synthesis, structures and magnetic properties of a series of chromium(III) metal-centered triangle (or "star") clusters, [Cr(4){RC(CH(2)O)(3)}(2)(4,4'-R'(2)-bipy)(3)Cl(6)] [R = Et, R' = H (2); R = HOCH(2), R' = H (3); R = Et, R' = (t)Bu (4)], prepared by two-step solvothermal reactions starting from [CrCl(3)(thf)(3)]. The product of the first stage of this reaction is the salt [Cr(bipy)(2)Cl(2)](2)[Cr(2)Cl(8)(MeCN)(2)] (1). In the absence of the diimine, a different family of tetrametallics is isolated: the butterfly complexes [Cr(4){EtC(CH(2)O)(3)}(2){NH(C(R)NH)(2)}(2)Cl(6)] (R = Me (5), Et (6), Ph (7)] where the chelating N-acetimidoylacetamidine NH(C(R)=NH)(2) ligands are formed in situ via condensation of the nitrile solvents (RCN) under solvothermal conditions. Magnetic measurements show the chromium stars to have an isolated S = 3 ground state, arising from antiferromagnetic coupling between the central and peripheral metal ions, analogous to the well-known Fe(III) stars. Bulk antiferromagnetic ordering is observed at 0.6 K. The butterfly complexes have a singlet ground state, with a low-lying S = 1 first excited state, due to dominant wing-body antiferromagnetic coupling.