Low intensity infrared laser effects on Escherichia coli cultures and plasmid DNA

Biostimulative effect of low intensity laser in tissues has been described on a photobiological basis and clinical protocols are recommended for treatment of various diseases. The aim of this work was to evaluate effects of laser exposure on the survival of Escherichia coli cultures and plasmid topological forms. Escherichia coli cultures and plasmids were exposed to infrared laser to study bacterial survival and electrophoretic profile, respectively. Data indicate low intensity infrared laser: (i) had no effect on E. coli wild type, endonuclease IV, exonuclease III, formamidopyrimidine DNA glycosylase/MutM protein and endonuclease III deficient cultures, but decreased the survival of E. coli UvrA protein deficient cultures; (ii) there was no alteration in the electrophoretic profile of plasmids. Exposure to low intensity infrared laser decreases survival of Escherichia coli cultures deficient in nucleotide excision repair of DNA and this effect could depend on fluences, wavelength and tissues conditions.     

Kinetics of Dissociation of Iron(III) Complexes of Tiron in Aqueous Acid

The kinetics of dissociation of the mono, bis, and tris complexes of Tiron (1,2-dihydroxy-3,5-benzenedisulfonate) have been studied in acidic aqueous solutions in 1.0 M HClO(4)/NaClO(4), as a function of [H(+)] and temperature. In general, the kinetics can be explained by two reactions, (H(2)O)Fe(L)(n)(-1) + H(2)L right arrow over left arrow (H(2)O)Fe(L(n)H) + H(+) (k(n), k(-n)) and (HO)Fe(L)(n)(-1) + H(2)L right arrow over left arrow (H(2)O)Fe(L(n)H) (k(n)', k(-n)'), a rapid equilibrium, (H(2)O)Fe(L(n)H) right arrow over left arrow (H(2)O)Fe(L)(n) + H(+) (K(cn)), and the formation constant (H(2)O)Fe(L)(n)(-1) + H(2)L right arrow over left arrow (H(2)O)Fe(L)(n) + 2H(+). For n = 1, the reaction was observed at 670 nm, and at [H(+)] of 0.05-0.5 M at temperatures of 2.0, 14.0, 25.0, and 36.7 degrees C. For n = 2, the analogous conditions are 562 nm, at [H(+)] of 1.5 x 10(-3) to 1.4 x 10(-2) M at temperatures of 2.0, 9.0, and 14.0 degrees C. For n = 3, the conditions are 482 nm, at pH 4.5-5.7 in 0.02 M acetate buffer at temperatures of 1.8, 8.0, and 14.5 degrees C. The rate or equilibrium constants (25 degrees C) with DeltaH or DeltaH degrees (kcal mol(-1)) and DeltaS or DeltaS degrees (cal mol(-1) K(-1)) in brackets are as follows: for n = 1, k(1) = 2.3 M(-1) s(-1) (8.9, -27.1), k(-1) = 1.18 M(-1) s(-1) (4.04, -44.8), K(c1) = 0.96 M (-9.99, -33.6), K(f1) = 2.01 M (-5.14, -15.85); for n = 2, k(-2)/K(c2) = 1.9 x 10(7) (19.9, 41.5) and k(-2)'/K(c2) = 1.85 x 10(3) (1.4, -38.8) and a lower limit of K(c2) > 0.015 M; for n = 3, k(3) = 7.7 x 10(3) (15.8, 12.3), k(-3) = 1.7 x 10(7) (16.2, 28.9), K(c3) = 7.4 x 10(-5) M (4.1, -5.1), and K(f3) = 3.35 x 10(-8) (3.7, -21.7). From the variations in rate constants and activation parameters, it is suggested that the Fe(L)(2) and Fe(L)(3) complexes undergo substitution by dissociative activation, promoted by the catecholate ligands.     

Oxidative Conversion of a Europium(II)‐Based T1 Agent into a Europium(III)‐Based paraCEST Agent that can be Detected In Vivo by Magnetic Resonance Imaging

The Eu^II complex of 1,4,7,10‐tetraazacyclododecane‐1,4,7,10‐tetraacetic acid (DOTA) tetra(glycinate) has a higher reduction potential than most Eu^II chelates reported to date. The reduced Eu^II form acts as an efficient water proton T₁ relaxation reagent, while the Eu^III form acts as a water‐based chemical exchange saturation transfer (CEST) agent. The complex has extremely fast water exchange rate. Oxidation to the corresponding Eu^III complex yields a well‐defined signal from the paraCEST agent. The time course of oxidation was studied in vitro and in vivo by T₁‐weighted and CEST imaging.     

Effect of end group polarity upon the lower critical solution temperature of poly(2-isopropyl-2-oxazoline)

Thermo-sensitive poly(2-isopropyl-2-oxazoline)s (PiPrOx) were functionalized with end groups of different polarity by living cationic ring-opening polymerization using the initiator and/or termination method as well as sequential block copolymerization with 2-methyl-2-oxazoline. As end groups, methyl, n-nonyl, piperidine, piperazine as well as oligo(ethylenglygol) and oligo(2-methyl-2-oxazoline) were introduced quantitatively. The lower critical solution temperature (LCST) of the aqueous solutions was investigated. The introduction of hydrophobic end groups decreases the LCST, while hydrophilic polymer tails raise the cloud point. In comparison to poly(N-isopropyl acrylamide), the impact of the end group polarity upon the modulation of the LCST was found to be significantly stronger. Surprisingly, terminal oligoethylenegycol units also decrease the LCST of PiPrOx, thus acting as moieties of higher hydrophobicity as compared to the poly(2-oxazoline) main chain. Together with the possible variation of the side group polarity, this allows a broad modulation of the LCST of poly(2-oxazoline)s.     

Structure of the Langmuir monolayers with fluorinated ethyl amide and ethyl ester polar heads creating dipole potentials of opposite sign

This study experimentally checks our previous hypothesis (Petrov, J. G.; Polymeropoulos, E. E.; Moehwald, H. Langmuir 2007, 23, 2623) that different conformations of the fluorinated heads of RCONHCH(2)CF(3) and RCOOCH(2)CF(3) monolayers cause the opposite signs and the striking difference of 1.480 V between their surface potentials Delta V. In situ X-ray diffraction at grazing incidence (GIXD) shows that both monolayers form orthorhombic lattices with closely packed chains tilted to the next-nearest neighbors in the RCONHCH(2)CF(3) film and upright in the RCOOCH(2)CF(3) monolayer. The packing of the chains in the plane perpendicular to them, which excludes the effect of the tilt, shows the same distance between the next-nearest neighbors, but significantly closer nearest neighbors in the RCONHCH(2)CF(3) film. This difference implies a specific anisotropic attraction between the adjacent amide heads. IR reflection absorption spectroscopy (IRRAS) shows that the -CONHCH(2)CF(3) heads have trans conformation and participate in H-bonds forming a -NH...O=C- lateral network. We speculate that such structure hinders the energetically optimal orientation of the hydrophobic -CH(2)CF(3) terminals toward air, so that the (delta+)C-(F (delta-))(3) dipoles at the monolayer/water boundary yield a strong positive contribution to Delta V. In contrast, most of the unbounded by H-bonds -COOCH(2)CF(3) heads statistically orient their hydrophobic (delta+)C-(F (delta-))(3) dipoles toward air, yielding a negative average dipole moment at the monolayer/water boundary and negative surface dipole potential.     

Parameterization of the approximate valence bond (AVB) method to describe potential energy surface in the reaction catalyzed by HIV‐1 protease

The approximate valence bond (AVB) method was parameterized to obtain the potential energy surface for ongoing classical and further quantum classical molecular dynamics simulations describing the enzymatic reaction of the human immunodeficiency virus type 1 protease (HIV‐1 PR). The parameterized AVB method allows to describe the complete enzymatic reaction, including a proton transfer between a water molecule and an aspartic acid, nucleophilic attack of a hydroxy anion on the substrate peptide bond, conformational changes of an intermediate, two proton transfers between the intermediate and aspartic acids, and cleavage of the intermediate into reaction products. The AVB method was parameterized based on density functional theory (DFT) calculations performed for small molecular systems. © 2001 John Wiley & Sons, Inc. Int J Quant Chem 82: 86–103, 2001     

Complex formation constants for the aqueous copper(I)-acetonitrile system by a simple general method

A simple spectrophotometric method for the evaluation of formation constants for aqueous copper(I) has been developed, based on the kinetics of reduction of Co(III)(NH(3))(5)X complexes. The method has been applied to the aqueous copper(I)-acetonitrile system to determine the successive formation constants beta(1), beta(2), and beta(3) as 4.3 x 10(2) M(-)(1), 1.0 x 10(4) M(-)(2), and 2.0 x 10(4) M(-)(3), respectively, in 0.14 M NaClO(4)/HClO(4) at 21 +/- 1 degrees C.     

Parameterization of peptide 13C carbonyl chemical shielding anisotropy in molecular dynamics simulations.

NMR chemical shielding anisotropy (CSA) relaxation is an important tool in the study of dynamical processes in proteins and nucleic acids in solution. Herein, we investigate how dynamical variations in local geometry affect the chemical shielding anisotropy relaxation of the carbonyl carbon nucleus, using the following protocol: 1) Using density functional theory, the carbonyl (13)C' CSA is computed for 103 conformations of the model peptide group N-methylacetamide (NMA). 2) The variations in computed (13)C' CSA parameters are fitted against quadratic hypersurfaces containing cross terms between the variables. 3) The predictive quality of the CSA hypersurfaces is validated by comparing the predicted and de novo calculated (13)C' CSAs for 20 molecular dynamics snapshots. 4) The CSA fluctuations and their autocorrelation and cross correlation functions due to bond-length and bond-angle distortions are predicted for a chemistry Harvard molecular mechanics (CHARMM) molecular dynamics trajectory of Ca(2+)-saturated calmodulin and GB3 from the hypersurfaces, as well as for a molecular dynamics (MD) simulation of an NMA trimer using a quantum mechanically correct forcefield. We find that the fluctuations can be represented by a 0.93 scaling factor of the CSA tensor for both R(1) and R(2) relaxations for residues in helix, coil, and sheet alike. This result is important, as it establishes that (13)C' relaxation is a valid tool for measurement of interesting dynamical events in proteins.     

Unusual reactivity of tris(pyrazolyl)borate zirconium benzyl complexes

The synthesis and reactivity of [Tp*Zr(CH2Ph)2][B(C6F5)4] (2, Tp* = HB(3,5-Me2pz)3, pz = pyrazolyl) have been explored to probe the possible role of Tp'MR2+ species in group 4 metal Tp'MCl3/MAO olefin polymerization catalysts (Tp' = generic tris(pyrazolyl)borate). The reaction of Tp*Zr(CH2Ph)3 (1) with [Ph3C][B(C6F5)4] in CD2Cl2 at -60 degrees C yields 2. 2 rearranges rapidly to [{(PhCH2)(H)B(mu-Me2pz)2}Zr(eta2-Me2pz)(CH2Ph)][B(C6F5)4] (3) at 0 degrees C. Both 2 and 3 are highly active for ethylene polymerization and alkyne insertion. Reaction of 2 with excess 2-butyne yields the double insertion product [Tp*Zr(CH2Ph)(CMe=CMeCMe=CMeCH2Ph)][B(C6F5)4] (4). Reaction of 3 with excess 2-butyne yields [{(PhCH2)(H)B(mu-Me2pz)2}Zr(Cp*)(eta2-Me2pz)][B(C6F5)4] (6, Cp* = C5Me5) via three successive 2-butyne insertions, intramolecular insertion, chain walking, and beta-Cp* elimination.     

Theoretical and infrared spectroscopic investigation of the O(2) (-).benzene and O(4) (-).benzene complexes

The infrared spectra of the O(2) (-).benzene and O(4) (-).benzene complexes are determined by means of Ar predissociation spectroscopy. Several transitions due to CH stretch fundamentals and various combination bands are observed in the 2700-3100 cm(-1) region. The experimental results are interpreted with the aid of electronic structure calculations. A comparison of the calculated and experimental spectra reveals that the spectrum of O(2) (-).benzene most likely arises from an isomer where the superoxide molecule binds preferentially to one CH group of benzene. In contrast, the spectrum of O(4) (-).benzene yields a CH pattern remarkably similar to that displayed by the C(2nu) X(-).benzene (X=halogen) complexes, consistent with a structure with two CH groups equally involved in the bonding. The lower energy vibrational fundamental transitions of the O(4) (-) anion are recovered with a slight redshift in the O(4) (-).benzene spectrum, establishing that this charge-delocalized dimer ion retains its identity upon complexation.