Determination of kinetic parameters for interfacial enzymatic reactions on self-assembled monolayers

This paper reports a method to characterize the kinetic constants for the action of enzymes on immobilized substrates. This example uses cutinase, a serine esterase that hydrolyzes 4-hydroxyphenyl valerate moieties that are immobilized on a self-assembled monolayer of alkanethiolates on gold. The product of the enzyme reaction is a hydroquinone, which is redox active and therefore permits the use of cyclic voltammetry to monitor the extent of reaction in situ. A kinetic model based on the Michaelis-Menten formalism is used to analyze the dependence of initial rates of reaction on both the substrate density and the enzyme concentration. The resulting value of k(cat)/K(M) for the interfacial reaction is comparable to that for a homogeneous phase reaction with a substrate of similar structure. This strategy of using monolayers presenting substrates for the enzyme and cyclic voltammetry to measure reaction rates provides quantitative and real-time information on reaction rates and permits a level of analysis of interfacial enzyme reactions that to date has been difficult to realize.     

Exploring the subtleties of drug-receptor interactions: the case of matrix metalloproteinases

By solving high-resolution crystal structures of a large number (14 in this case) of adducts of matrix metalloproteinase 12 (MMP12) with strong, nanomolar, inhibitors all derived from a single ligand scaffold, it is shown that the energetics of the ligand-protein interactions can be accounted for directly from the structures to a level of detail that allows us to rationalize for the differential binding affinity between pairs of closely related ligands. In each case, variations in binding affinities can be traced back to slight improvements or worsening of specific interactions with the protein of one or more ligand atoms. Isothermal calorimetry measurements show that the binding of this class of MMP inhibitors is largely enthalpy driven, but a favorable entropic contribution is always present. The binding enthalpy of acetohydroxamic acid (AHA), the prototype zinc-binding group in MMP drug discovery, has been also accurately measured. In principle, this research permits the planning of either improved inhibitors, or inhibitors with improved selectivity for one or another MMP. The present analysis is applicable to any drug target for which structural information on adducts with a series of homologous ligands can be obtained, while structural information obtained from in silico docking is probably not accurate enough for this type of study.     

Drop manipulation and surgery using electric fields

We study the dynamics of a slender drop sandwiched between two electrodes using lubrication theory. A coupled system of evolution equations for the film thickness and interfacial charge density is derived and simplified for the case of a highly conducting fluid. The contact line singularity is relieved by postulating the existence of a wetting precursor film, which is stabilised by intermolecular forces. We examine the motion of the drop as a function of system parameters: the electrode separation, beta, an electric capillary number, C, and a spatio-temporally varying bottom electrode potential. The possibility of drop manipulation and surgery, which include drop spreading, translation, splitting and recombination, is demonstrated using appropriate tuning of the properties of the bottom potential; these results could have potential implications for drop manipulation schemes in various microfluidic applications. For relatively small beta and/or large C values, the drop assumes cone-like structures as it approaches the top electrode; the latter stages of this approach are found to be self-similar and a power-law exponent has been extracted for this case.     

PEP-1-GLRX1 Reduces Dopaminergic Neuronal Cell Loss by Modulating MAPK and Apoptosis Signaling in Parkinson’s Disease

Parkinson’s disease (PD) is characterized mainly by the loss of dopaminergic neurons in the substantia nigra (SN) mediated via oxidative stress. Although glutaredoxin-1 (GLRX1) is known as one of the antioxidants involved in cell survival, the effects of GLRX1 on PD are still unclear. In this study, we investigated whether cell-permeable PEP-1-GLRX1 inhibits dopaminergic neuronal cell death induced by 1-methyl-4-phenylpyridinium (MPP⁺) and 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). We showed that PEP-1-GLRX1 protects cell death and DNA damage in MPP⁺-exposed SH-SY5Y cells via the inhibition of MAPK, Akt, and NF-κB activation and the regulation of apoptosis-related protein expression. Furthermore, we found that PEP-1-GLRX1 was delivered to the SN via the blood–brain barrier (BBB) and reduced the loss of dopaminergic neurons in the MPTP-induced PD model. These results indicate that PEP-1-GLRX1 markedly inhibited the loss of dopaminergic neurons in MPP⁺- and MPTP-induced cytotoxicity, suggesting that this fusion protein may represent a novel therapeutic agent against PD.     

Proteomic Evaluation of Biomarkers to Determine the Postmortem Interval

Proteomics separates and analyzes proteins for investigation at the cellular level in regard to disease processing by analyzing the proteins’ expression, function, structure, post-translational modification, and protein–protein interaction. In general forensic investigations, the postmortem interval was evaluated by measuring changes in body temperature after death, along with forensic entomological knowledge. These investigations may be restrictive and subjective because of external factors. The objectives of this study are to sort biomarker candidates and develop a direct postmortem-interval characterization method using proteomics through analyzing and tracking down proteins in the deceased that change in accordance with the postmortem interval. The liver and heart tissues of rats were collected for protein extraction in the 24-h interval following death, and two-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis analysis was conducted based on the isoelectric point and the molecular weight for separation. To validate protein spot changes on the gel, the stained electrophoresis gels were scanned and converted to digital images. Through image analysis, 14 liver proteins and 12 heart proteins were sorted and classified into four groups based on pattern changes. These proteins containing spots were extracted from the gel and analyzed by high-performance liquid chromatography with tandem mass spectrometry. Finally, 26 protein postmortem-interval relevant biomarker candidates were identified using software. Some of the proteins were muscle proteins while others were oxidation-related proteins. This study presents a new approach to the postmortem-interval research using proteomics and could be substituted for postmortem-interval evaluation.     

Numerical characterization of ultraviolet ink fluid agglomeration and the surfactant effect in nanoinkjet printing

Ultraviolet (UV) ink is a major ink type used in additive manufacturing via 3D inkjet printing. A major challenge in nanoinkjet printing is ink agglomeration. Among the UV ink components, oligomers have the highest tendency to agglomerate which can agitate the stability and quality of the printing fluid and possibly lead to nanoscale nozzle clogging. In this work, the first numerical study on the UV ink fluid, UV ink is modeled by using dissipative particle dynamics to study mesoscale agglomeration. The constituents of the ink model are composed of polystyrene and polyethylene glycol as photopolymers, BZP as a photoinitiator, and SDS as a surfactant. Styrene is a prevalent and established commercial photopolymer in present 3D inkjet applications, while ethylene glycol is a photopolymer known to improve ink viscosity. The morphological characteristics of the UV ink are studied here, where the results for different models from four cases considered here show how the kind of photopolymers and their constituent ratios affect the agglomeration morphology of the fluidic system. The existence of both oligomers and monomers results in mutual morphological benefits against agglomeration, while the photoinitiator occurs between photopolymers. In addition, we find that the surfactant can reduce the average size of agglomeration and improve the dispersion uniformity by increasing the number of agglomerates. These results highlight the important role additives can play to prevent, reduce, and control various forms of agglomeration to achieve enhanced nanoinkjet printing quality. Copyright © 2017 John Wiley & Sons, Ltd.     

Microparticle collection and concentration via a miniature surface acoustic wave device

The ability to detect microbes, pollens and other microparticles is a critically important ability given the increasing risk of bioterrorism and emergence of antibiotic-resistant bacteria. The efficient collection of microparticles via a liquid water droplet moved by a surface acoustic wave (SAW) device is demonstrated in this study. A fluidic track patterned on the SAW device directs the water droplet's motion, and fluid streaming induced inside the droplet as it moves along is a key advantage over other particle collection approaches, because it enhances microparticle collection and concentration. Test particles consisted of 2, 10, 12 and 45 microm diameter monodisperse polystyrene and melamine microparticles; pollen from the Populus deltoides, Kochia scoparia, Secale cerale, and Broussonetia papyrifera (Paper Mulberry) species; and Escherichia coli bacteria. The collection efficiency for the synthetic particles ranged from 16 to 55%, depending on the particle size and surface tension of the collection fluid. The method was more effective in collecting pollen and the bacteria with an efficiency of 45-68% and 61.0-69.8%, respectively. Pollen collection was strongly influenced by its diameter, size, and surface geometry in a manner contrary to initial expectations. Reasons for the consistent yet unexpected collection results include leaky SAW pressure boundary segregation and shear-induced concentration of larger particles, and the subtle effects of wetting interactions. These results demonstrate a new method for collecting microparticles requiring only about one second per run, and illustrate the inadequacy of using synthetic microparticles as a substitute for their biological counterparts in experiments studying particle collection and behavior.     

Ex-vivo NMR of unprocessed tissue in water: a simplified procedure for studying intracranial neoplasms

Ex-vivo and in-vitro nuclear magnetic resonance (NMR) spectroscopy techniques have been used for studying chemical metabolites in surgically resected specimens of human neoplasms, and may provide complementary information to in-vivo whole-body magnetic-resonance spectroscopy (MRS). We describe an ex-vivo NMR in water method for measurement of water-soluble metabolites in unprocessed normal rat brain tissue and human intracranial neoplasms. The NMR spectra obtained using the method described here were comparable to those obtained using high-resolution magic-angle spinning (HRMAS) NMR methods, with good correlation in metabolite concentrations relative to creatine (r ² = 0.7635). Improved spectral resolution and baseline were noted compared to HRMAS, but macromolecule resonances were not detected. Ex-vivo NMR of unprocessed tissue in water is rapid and technically simple to perform, and has the potential to be used for direct assessment of intracranial neoplasms.     

On a conjecture of Murty and Simon on diameter 2-critical graphs

A graph G is diameter 2-critical if its diameter is two, and the deletion of any edge increases the diameter. Murty and Simon conjectured that the number of edges in a diameter 2-critical graph of order n is at most n²/4 and that the extremal graphs are complete bipartite graphs with equal size partite sets. We use an association with total domination to prove the conjecture for the graphs whose complements have diameter three.