Association of humic acid with metal (hydr)oxide-coated sands at solid-water interfaces

Mineral-bound humic acid (HA) can significantly modify the physicochemical properties of the mineral surfaces and vice versa, thereby influencing the fate and transport of organic pollutants in the subsurface. The effect of various mineral surfaces on the adsorption-desorption of dissolved bulk, terrestrial HA was evaluated using three model sorbents [uncoated, alpha-FeO(OH)-coated, and Al2O3-coated sands] at two equilibrium pH values. The results of SEM/EDS and XPS analyses revealed relatively uniform and stable metal (hydr)oxide coatings on quartz surface and the presence of the HA coating. Strong hysteresis effects were observed for both metal (hydr)oxide-coated sands whereas a weaker hysteresis effect was observed for uncoated sand, suggesting that the adsorption-desorption of HA to model sorbents is dependent on the affinity of chemical interactions between the HA and surface composition of model sorbents. Adsorption of HA molecules onto metal (hydr)oxide-coated sands can be attributed to ligand exchange for lower molecular weight (MW) HA fractions and hydrophobic interaction for higher MW HA fractions, illustrating that both kinetic and fractional adsorption-desorption of HA subcomponents are important considerations.     

Kinetics of gold nanoparticle aggregation: experiments and modeling

We investigate the aggregation kinetics of gold nanoparticles using both experimental techniques (i.e., quasi-elastic light scattering, UV-visible spectroscopy, and transmission electron microscopy) and mathematical modeling (i.e., constant-number Monte Carlo). Aggregation of gold nanoparticles is induced by replacing the surface citrate groups with benzyl mercaptan. We show that the experimental results can be well described by the model in which interparticle interactions are described by the classical DLVO theory. We find that final gold nanoparticle aggregates have a fractal structure with a mass fractal dimension of 2.1-2.2. Aggregation of approximately 11 initial gold nanoparticles appears to be responsible for the initial color change of suspension. This kinetic study can be used to predict the time required for the initial color change of a gold nanoparticle suspension and should provide insights into the design and optimization of colorimetric sensors that utilize aggregation of gold nanoparticles.     

Tunneling anisotropic magnetoresistance in multilayer-(Co/Pt)/AlO_(x)/Pt structures

We report observations of tunneling anisotropic magnetoresitance (TAMR) in vertical tunnel devices with a ferromagnetic multilayer-(Co/Pt) electrode and a nonmagnetic Pt counterelectrode separated by an AlOx barrier. In stacks with the ferromagnetic electrode terminated by a Co film the TAMR magnitude saturates at 0.15% beyond which it shows only weak dependence on the magnetic field strength, bias voltage, and temperature. For ferromagnetic electrodes terminated by two monolayers of Pt we observe order(s) of magnitude enhancement of the TAMR and a strong dependence on field, temperature and bias. The discussion of experiments is based on relativistic ab initio calculations of magnetization orientation dependent densities of states of Co and Co/Pt model systems.     

Preparation and properties of a new aromatic polyamide with an ethoxycarbonyl pendant group: Poly(4,4′‐diamino‐2′‐ethoxycarbonyl‐benzanilide terephthalamide)

A new aromatic polyamide containing a pendant ethoxycarbonyl group was successfully synthesized from the reaction between 4,4′‐diamino‐2′‐ethoxycarbonylbenzanilide and terephthaloyl chloride. The new polymer was soluble in organic solvents such as N‐methyl‐2‐pyrrolidone and dimethylacetamide, and a tough and transparent film was cast from the polymer solution with viscosities ranging from 2.6 to 5.6 dL/g. When the polymer film was heat‐treated at a temperature greater than 300 °C, a cyclization reaction occurred between the ethoxycarbonyl group and the adjacent amide bond to form a benzoxazinone unit in the polymer backbone. The thermal decomposition onset temperature of the cyclized film was about 523 °C, which was somewhat lower than that of poly(p‐phenylene terephthalamide) (PPTA; 566 °C); however, the decomposition rate was slower than that of PPTA to yield a higher char residue. The dispersion temperature of the uncyclized poly(4,4′‐diamino‐2′‐ethoxycarbonylbenzanilide terephthalamide) (PDEBTA) was about 340 °C, whereas that of the cyclized PDEBTA was not clear. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 936–942, 2000     

Effects of poloxamer on the gelation of silk sericin

Effects of the concentration of poloxamer 407, temperature, and the concentration of sericin on the gelation of silk sericin (SS) were studied. Gelation of SS was accelerated with an increase in poloxamer concentration and temperature. The sol‐gel transition of SS became irreversible with respect to the temperature in the presence of poloxamer, whereas the sol‐gel transition of SS itself was reversible. Infrared (IR) and circular dichroism (CD) spectra show that the conformational change of SS in the presence of poloxamer was accelerated from random coil to β‐structure. X‐ray diffraction and differential scanning calorimetry (DSC) show that the crystalline structure of poloxamer in the mixture was affected by the presence of SS and that its melting temperature was shifted to lower temperature with increasing SS content, indicating an interaction between poloxamer and SS through hydrogen and hydrophobic bondings.     

Polypyrrole–montmorillonite nanocomposites synthesized by emulsion polymerization

The structural, electrical, magnetic, and thermal properties were investigated for the nanocomposites of polypyrrole (PPy) and inorganic clay (Na⁺-montmorillonite) prepared by emulsion polymerization. Dodecylbenzenesulfonic acid (DBSA) was used as emulsifier (surfactant) and dopant. The X-ray diffraction (XRD) patterns and transmission electron microscopy (TEM) images showed that the conducting PPy was intercalated into the clay layers in nanoscale (<10 Å). The dc conductivity (σ_dc) of PPy–DBSA with clay was 6 S/cm, while that of PPy–DBSA without clay was 20 S/cm at room temperature (RT). Temperature dependence of σ_dc of both samples followed the three dimensional variable range hopping (VRH) model. From the g-value and the temperature dependence of EPR linewidth, paramagnetic signals were strongly affected by the partially negatively charged clay layers. The thermogravimetric analysis (TGA) and differential scanning calorimeter (DSC) showed that the clay induced the thermal stability of the systems.     

Rotational isomerism about acyl–oxygen bond in two envelope conformations and vibrational spectral analysis of cyclopentyl acetate—a combined theoretical and experimental study

The s-cis and s-trans isomers resulting from the rotation about the acyl–oxygen bond of two envelope conformations with C5 (neighbour to substituted carbon C4) and C4 as apical atoms in the five-membered ring and vibrational spectra of cyclopentyl acetate are studied with density functional molecular orbital theory at the B3LYP/6-311++G** level. In the case of C5 at the flap and –OAc group in the axial position, it is found that the s-cis isomer (1:s-cis) is more stable than the s-trans isomer (1:s-trans) by 7.46 kcal/mol. The s-cis–s-trans rotational barrier is 15 kcal/mol. The other two conformers with C4 at the flap and –OAc group in the equatorial position, the relative energies of the s-cis and s-trans isomers (2:s-cis and 2:s-trans) with respect to 1:s-cis are found to be 0.45 and 8.21 kcal/mol, respectively. The infrared spectra (200–3200 cm⁻¹) in gas and liquid phase and Raman spectra (3200–150 cm⁻¹) in liquid phase for cyclopentyl acetate and 10 of its isotopomers are recorded. The calculated spectra of all conformers along with the observed spectra has helped study the effect of rotational isomerism on the vibrational spectra. The normal coordinate analysis in terms of non-redundant local coordinates is done for vibrational assignments of the 57 normal modes. The experimental and theoretical results are compared to the corresponding quantities of some similar molecules.     

CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields

Sequence–structure alignment for protein sequences is an important task for the template-based modeling of 3D structures of proteins. Building a reliable sequence–structure alignment is a challenging problem, especially for remote homologue target proteins. We built a method of sequence–structure alignment called CRFalign, which improves upon a base alignment model based on HMM-HMM comparison by employing pairwise conditional random fields in combination with nonlinear scoring functions of structural and sequence features. Nonlinear scoring part is implemented by a set of gradient boosted regression trees. In addition to sequence profile features, various position-dependent structural features are employed including secondary structures and solvent accessibilities. Training is performed on reference alignments at superfamily levels or twilight zone chosen from the SABmark benchmark set. We found that CRFalign method produces relative improvement in terms of average alignment accuracies for validation sets of SABmark benchmark. We also tested CRFalign on 51 sequence–structure pairs involving 15 FM target domains of CASP14, where we could see that CRFalign leads to an improvement in average modeling accuracies in these hard targets (TM-CRFalign ≃42.94%) compared with that of HHalign (TM-HHalign ≃39.05%) and also that of MRFalign (TM-MRFalign ≃36.93%). CRFalign was incorporated to our template search framework called CRFpred and was tested for a random target set of 300 target proteins consisting of Easy, Medium and Hard sets which showed a reasonable template search performance.     

pH‐Responsive PEG‐Poly(β‐amino ester) Block Copolymer Micelles with a Sharp Transition

Summary: A pH‐sensitive block copolymer is synthesized by step polymerization and its pH‐sensitive micellization‐demicellization behavior is studied. This polymer has a hydrophilic MPEG (shell) and hydrophobic but pH‐sensitive poly(β‐amino ester) (core), which can form a self‐assembled micelle. As confirmed by fluorescence spectroscopy and dynamic light scattering (DLS), this polymer shows a sharp pH‐sensitive micellization‐demicellization behavior. It is confirmed that the pH sensitivity is affected by the molecular weight ratio between the MPEG and poly(β‐amino ester).

Plots of the intensity ratio I₃₃₇/I₃₃₄ (from pyrene excitation spectra): a) vs. pH for copolymer samples and b) vs. log (concentration) for M1.     

GABAA Receptor-Mediated Sleep-Promoting Effect of Saaz–Saphir Hops Mixture Containing Xanthohumol and Humulone

Hops contain flavonoids that have sedative and sleep-promoting activities such as α-acid, β-acid, and xanthohumol. In this study, the sleep-enhancing activity of a Saaz–Saphir hops mixture was measured. In the caffeine-induced insomnia model, the administration of a Saaz–Saphir mixture increased the sleep time compared to Saaz or Saphir administration alone, which was attributed to the increase in NREM sleep time by the δ-wave increase. Oral administration of the Saaz–Saphir mixture for 3 weeks increased the γ-amino butyric acid (GABA) content in the brain and increased the expression of the GABA_A receptor. As the GABA antagonists picrotoxin and bicuculline showed a decrease in sleep activity, it was confirmed that the GABA_A receptor was involved in the Saaz–Saphir mixture activity. In addition, the GABA_A receptor antagonist also reduced the sleep activity induced by xanthohumol and humulone contained in the Saaz–Saphir mixture. Therefore, xanthohumol and humulone contained in the Saaz–Saphir mixture showed sleep-promoting activity mediated by the GABA_A receptors. The mixture of the Saaz and Saphir hop varieties may thus help mitigate sleep disturbances compared to other hop varieties.