On the relationship of amino acid composition to silver staining of proteins in electrophoresis gels: II. Peptide sequence analysis.

The quantification of proteins in silver-stained electrophoresis gels has been limited by the differences in "stainability" of different proteins. Despite efforts by many researchers, the precise basis of the reaction between silver reagents and polypeptides is still unclear, and, depending on the formulation, may even differ. We have tested the hypothesis that differences in stainability among proteins can be attributed to differences in di- or tripeptide composition. The results indicate that some order of protein structure other than short peptides accounts for the staining differences observed.     

Polymerization of pyromellitic dianhydride with 3,3′-diaminobenzidine in aprotic solvents II. Dilute solution studies

Solution properties were determined for the poly(amide acid amine) obtained from the room-temperature polymerization of pyromellitic dianhydride with 3,3,-diaminobenzidine in aprotic solvents. Membrane osmometry data, viscosity studies, solution aging studies, and pH–viscosity relationships were given. Anomalous upswings in viscosity–concentration plots were attributed to absorption or capillary wall effects and not to polyelectrolyte effects, such as were induced by addition of strong bases. Similar absorption effects were found with polyamic acid solutions, in contrast to earlier reports that these polyimide precursors were polyelectrolytes. Unfavorable storage characteristics of the polymer solutions were explained by aging studies which showed that at 25°C dilute solutions exhibited a rapid drop in viscosity; in concentrated solution a slow increase to gelation was observed.     

Chromatographic analysis of sagebrush monoterpenes in blood plasma

An analytical method is required for the analysis of monoterpenes in animal plasma to support a pharmacokinetic study. Monoterpenes common to sagebrush are extracted from sheep plasma by employing solid-phase extraction (SPE), followed by analysis of the extracts by gas chromatography with flame ionization detection. The analytes are quantitated versus an external standard and by comparison with a surrogate standard added to the sample prior to extraction. In addition to comparing the two quantitative methods, the storage stability of the analytes in plasma and SPE columns is evaluated. Both methods employed for quantitation yield precision suitable for pharmacokinetic studies. However, determination of monoterpenes residues versus external standards produces improved accuracy as compared with use of the surrogate standard. Some analyte loss is observed from plasma samples stored for five weeks at -12 degrees C. However, storage of extracts on the SPE columns affords excellent stability.     

Two new octahedral/pyramidal frameworks containing both cation channels and lone-pair channels: syntheses and structures of Ba2MnMn2(SeO3)6 and PbFe2(SeO3)4

The hydrothermal syntheses, single crystal structures, and some properties of Ba₂Mn^IIMn₂^III(SeO₃)₆ and PbFe₂(SeO₃)₄ are reported. These related phases contain three-dimensional frameworks of vertex (FeO₆) and vertex/edge linked (MnO₆) octahedra and SeO₃ pyramids. In each case, the MO₆/SeO₃ framework encloses two types of 8 ring channels, one of which encapsulates the extra-framework cations and one of which provides space for the Se^IV lone pairs. Crystal data: Ba₂Mn₃(SeO₃)₆, M_r=1201.22, monoclinic, P2₁/c (No. 14), a=5.4717 (3) Å, b=9.0636 (4) Å, c=17.6586 (9) Å, β=94.519 (1)°, V=873.03 (8) Å³, Z=2, R(F)=0.031, wR(F²)=0.070; PbFe₂(SeO₃)₄, M_r=826.73, triclinic, (No. 2), a=5.2318 (5) Å, b=6.7925 (6) Å, c=7.6445 (7) Å, α=94.300 (2)°, β=90.613 (2)°, γ=95.224 (2)°, V=269.73 (4) Å³, Z=1, R(F)=0.051, wR(F²)=0.131.     

Structure and behavior of organic analytical reagents : Stability of chelates of 2-(o-hydroxyphenyl)-benzimidazole and analogous reagents1

Stabilities of chelates of 2-(o-hydroxyphenyl)-pyridine, 2-(o-hydroxyphenyl)-quinoline, 1-(o-hydroxyphenyl)-isoquinoline, 2-(o-hydroxyphenyl)-benzimidazole, and 2-(o-hydroxyphenyl)-imidazoline were determined by the Calvin-Bjerrum potentiometric titration technique. The results have been interpreted in terms of steric considerations.     

Sequence-specific fragmentation of benzyloxycarbonyl dipeptides by resonance-enhanced multiphoton ionization

The mechanism of fragment ion formation in resonance-enhanced multiphoton ionization (REMPI) of benzyloxycarbonyl (CBZ)-derivitized dipeptides is presented. At 266 nm, the entire multiphoton process can be thought of as a two-part scheme where ionization occurs by resonant two-photon ionization followed by photodissociation of the created ions. When the energy of two photons exceeds the molecular ionization energy by a significant amount, REMPI has the advantage of producing both parent ions and low appearance energy fragments in large amounts. For CBZ dipeptides, resonant two-photon ionization at 266 nm produces parent ions as well as A type sequence ions with high abundance. On the other hand, a three-photon process (resonant two-photon ionization followed by parent ion photodissociation) forms sequence-related ions which also involve complex fragmentations of the CBZ chromophore. These results are compared to mass spectra obtained by other ionization/dissociation methods and to REMPI mass spectra of related compounds. Factors related to molecular structure elucidation based upon REMPI mass spectra are discussed. Enhanced isomer distinction is demonstrated for CBZ-leu-ala-OCH₃ and CBZ-ile-ala-OCH₃ based upon REMPI fragmentation.     

CHARACTERIZATION OF THE PHOTOREACTION BETWEEN DNA AND AMINOMETHYL-TRIMETHYLPSORALEN USING ABSORPTION AND FLUORESCENCE SPECTROSCOPY

–The use of absorption and fluorescence spectroscopy for following the progress of the photo-reaction between DNA and 4'-aminomethyl-4,5',8-trimethylpsoralen (AMT) has been investigated. Absorption at long wavelengths and fluorescence both decline upon intercalation of AMT into the DNA helix. The loss of fluorescence from AMT and the accompanying appearance of monoadduct fluorescence upon irradiation by UV light can be easily followed by using the excitation beam of a spectro-fluorometer as the source of irradiation and monitoring the changing emission spectrum. Where cross-link formation is possible, the subsequent decline of monoadduct fluorescence is seen as well. This suggests that the 4,5-tnonoadduct is a precursor of cross-links. Both monoaddition and cross-linking are more rapid with poly d(A·T) than with calf thymus DNA or poly d(A·T). Excitation spectra can be helpful in resolving the levels of AMT and 4',5'-monoadduct when both are contributing to the emission spectrum. Some changes are observed in the emission spectrum of AMT–poly d(A·T) monoadducts after prolonged irradiation which indicate further photoreaction.     

o-nitroaniline derivatives. IV—The mass spectra of o-nitroanils

The principal feature of the mass spectra of o-nitroanils, ArCH?NC₆H₄NO₂(o-), is an intense peak corresponding to the [ArCO]⁺ ion; this implies oxygen transfer from the nitro group to the azomethine carbon during the fragmentation process. In this series of anils, loss of OH from the molecular ion is not apparently an important fragmentation pathway, in contrast to the fragmentation of o-nitrobenzylideneanilines. Benzylideneaniline derivatives with an o-nitro substituent in both rings have mass spectra which indicate interaction of both nitro groups with the ? CH?N? group, but in this series of spectra the [M—17]⁺ ion is again of low intensity.     

Cholesterol ozonolysis: kinetics, mechanism, and oligomer products

Fine particles of cholesterol were reacted with ozone under pseudo-first-order conditions in an aerosol bag reactor. Gas-phase ozone was monitored using an ozone meter. Particle size distribution functions were determined using a scanning mobility particle sizer, which selected particle sizes for introduction into a photoionization aerosol mass spectrometer (PIAMS). PIAMS was used to determine the concentration of cholesterol in the aerosol as a function of reaction time. Dilution corrected rate coefficients were used to calculate the reactive uptake coefficient for ozone onto cholesterol particles as (2.8 +/- 0.4) x 10(-6). Uptake was found to be independent of particle diameter for the sizes studied (100 and 200 nm), suggesting that the uptake is surface mediated. The reaction products were also collected on filters and analyzed by electrospray ionization (ESI) mass spectrometry with both direct infusion and liquid chromatography sample introduction. The main primary reaction products contained one, two, or three oxygens added to the cholesterol moiety. Secondary oligomeric products were also observed, consisting of covalently bound dimers and trimers. Tandem mass spectrometry was used to confirm the expected structures of these compounds. The dimers appear to be acyl hydroperoxides, consistent with a previously reported mechanism for the reaction in a nonparticipating solvent. Finally, the magnitude of the uptake coefficient confirms that cholesterol is suitable as a local source tracer for source apportionment of ambient organic aerosol.     

Concentrated CO(2)-in-Water Emulsions with Nonionic Polymeric Surfactants

Concentrated CO(2)-in-water (C/W) emulsions are reported for amphiphiles containing alkylene oxide-, siloxane-, and fluorocarbon-based tails as a function of temperature and salinity. Poly(ethylene oxide)-b-poly(butylene oxide) (EO(15)-b-BO(12)) can emulsify up to 70% CO(2) with droplet sizes from 2 to 4 &mgr;m in diameter, as determined by video-enhanced microscopy. This emulsion is stable over 48 h against both flocculation and coalescence. In contrast, it is extremely difficult to form concentrated water-in-CO(2) (W/C) emulsions with surfactants containing alkylene oxide moieties due to limited solvation of such tails by CO(2). In several cases, C/W emulsions are formed even when the surfactant prefers CO(2). This violation of Bancroft's rule may be attributed in part to the low viscosity of the compressed CO(2), which governs several mass and momentum transport mechanisms relevant to emulsion formation and stabilization. For the first time, W/C microemulsions are observed in a system with a nonionic amphiphile, namely F(CF(2)CF(2))(3-8)CH(2)CH(2)O(CH(2)CH(2)O)(10-15)H. For the same system, the emulsion morphology changes from C/W to W/C as the temperature increases. The electrical conductivity of C/W emulsions is predicted successfully as a function of the dispersed phase volume fraction of CO(2) with Maxwell's theory for inhomogeneous systems. Copyright 2001 Academic Press.