Direct electrochemistry of recombinant tobacco peroxidase on gold

Direct electron transfer (DET) reactions of recombinant tobacco peroxidase (rTOP), namely direct electroreduction of Compound I/Compound II and heme Fe^3+/2+ conversion, were studied on gold electrodes. rTOP of wild type, non-glycosylated, was produced using an Escherichia coli expression system. At pH 5.0, the redox potential for direct electrochemical transformation of the Fe^3+/2+ of the peroxidase heme was −143 mV vs. AgAgCl, and 0.26 ± 0.07 pmol of the adsorbed rTOP were in DET contact with the gold electrode. The total amount of the adsorbed rTOP estimated from QCM data was 53 ± 5 pmol/cm² or 1.67 pmol when referred to the surface area of the electrodes used for electrochemical measurements. Of 1.67 pmol of adsorbed rTOP, only 0.76 pmol were catalytically active. DET between Au and the enzyme was also studied in the reaction of the bioelectrocatalytic reduction of H₂O₂ by cyclic voltammetry and amperometric detection of H₂O₂ at +50 mV with rTOP-modified Au electrodes placed in a wall-jet flow-through electrochemical cell. Maximal bioelectrocatalytic current response of the rTOP-modified gold electrodes to H₂O₂ was observed at pH 5.0 and stemmed from its bioelectrocatalytic reduction based on DET between Au and the active site of rTOP. Kinetic analysis of the DET reactions gave 52% of the adsorbed rTOP molecules active in DET reactions (0.4 pmol of adsorbed catalytically active rTOP, correspondingly), which correlated well with the non-catalytic-voltammetry data. DET was characterised by a heterogeneous ET rate constant of 13.2 s⁻¹, if one takes into account the QCM data, and 19.6 s⁻¹, if the amount of rTOP estimated from the data on DET transformation of Fe^3+/2+ couple of rTOP is considered. The sensitivity for H₂O₂ obtained for the rTOP-modified Au electrodes was 0.7 ± 0.1 A M⁻¹ cm⁻². These are the first ever-reported data on DET reactions of anionic plant peroxidases on bare gold electrodes.     

Kinetics and mechanism in the decomposition of NH3 in a radio-frequency pulse discharge

Studies of time-resolved absorption spectra of transient species in the decomposition of NH₃ by an r.f. pulse discharge together with product analysis showed that the major radical formed was NH at concentrations of the order of 10^–6 mol dm^–3 (10⁵ molec. cm^–3). Possible mechanisms for the formation of the radical during the discharge and its decay following pulse cut-off were tested by computer simulation of the kinetic data. Following zero-order formation with rate coefficient 0.19±0.03 mol dm^–3 s^–1, the decay was second order in NH with rate coefficient 2.1±0.5×10⁹ mol^–1 dm³ s^–1 both for pure NH₃ and where NH₃/rare gas mixtures were investigated. The kinetic data are consistent with NH removal in a nonassociative radical-radical reaction proceeding via a short-lived collision complex, probably 2NH N₂H₂ N₂ + H₂.     

The Electronic Structure of Vinyl Ethers and Sulfides with Interrupted Conjugation Examined by Photoelectron Spectroscopy

Photoelectron spectroscopy has been used to examine the consequences of steric inhibition of conjugation in a distorted vinyl sulfide and vinyl ether. Based upon the degree of interaction a deviation from coplanarity of 70°–75° is calculated for 9-oxabicyclo[3.3.1]non-1-ene ( 3 ) and approximately 75°–80° for the sulfur analog 6 .     

Synthesis, Characterization, Luminescence, and Electrochemistry of New Tetranuclear Gold(I) Amidinate Clusters: Au4[PhNC(Ph)NPh]4, Au4[PhNC(CH3)NPh]4, and Au4[ArNC(H)NAr]4

The syntheses and the X-ray structures of the tetranuclear gold(I) benzamidinate, Au₄[PhNC(Ph)NPh]₄, and the tetranuclear gold(I) acetamidinate, Au₄[PhNC(CH₃)NPh]₄, clusters are reported. The clusters are produced by the reaction of the sodium salt of an amidine ligand with the gold precursor Au(THT)Cl in a (1:1) stoichiometry. The average Au...Au distance between adjacent Au(I) atoms is ∼2.9 ?, typical of compounds having an aurophilic interaction. The four gold atoms are arranged in a square (Au...Au...Au... = 88–91°) in the acetamidinate and in a distorted square (Au...Au...Au... = 82–97°) in the benzamidinate derivative. Electrochemical oxidation of the tetranuclear complex Au₄[PhNC(Ph)NPh]₄ show three reversible waves at 0.87, 1.19, 1.42 V vs. Ag/AgCl at a scan rate of 100 mV/s in CH₂Cl₂ similar to the three reversible waves seen before from the tetranuclear complexes Au₄[ArNC(H)NAr]₄, Ar = C₆H₄-4-OMe, Ar = C₆H₄-4-Me, and Ar = C₆H₃-3,5-Cl. A summary of the chemistry of the tetranuclear Au(I) amidinate complexes Au₄[ArNC(H)NAr]₄, Ar = C₆H₄-4-OMe, C₆H₃-3,5-Cl, C₆H₄-4-Me, C₆H₄-3-CF₃, C₆F₅, C₁₀H₇ also is presented. The tetranuclear clusters Au₄[ArNC(H)NAr]₄, Ar = C₆H₄-4-OMe, Ar = C₆H₄-3-CF₃, Ar = C₆H₄-4-Me and Ar = C₆H₄-3,5-Cl are the first tetranuclear gold(I) cluster species from group 11 elements to show fluorescence at room temperature. The lifetimes of the naphthyl and trifluoromethylphenyl complexes are in the millisecond range indicating phosphorescent processes. Recently it has been shown that Au₄[ArNC(H)NAr]₄ are very effective catalysts upon calcination for room temperature CO oxidation. Congratulations to Dieter Fenske, a superb synthetic chemist with exceptional talents in cluster chemistry, on the occasion of his 65th birthday.     

NMR studies on solid cyclohexaamylose inclusion compounds

Orthorhombic inclusion compounds of cyclohexaamylose with methanol,n-propanol, acetic acid and water as guest molecules were studied using¹³C and²H NMR techniques.¹³C chemical shifts were correlated with structural data, whereas²H NMR lineshapes were used to derive information on guest molecule motions.Issued as NRCC No. 25568. Presented in part at the 2nd International Symposium on Clathrate Compounds and Molecular Inclusion Phenomena, Parma, Italy, 30 Aug.–3 Sept. 1982     

DNA polymerase-mediated DNA synthesis on a TNA template

TNA, or threose nucleic acid, is capable of Watson-Crick base pairing with DNA, RNA, and TNA; coupled with its chemical simplicity, this suggests that TNA is a possible progenitor of RNA. As an initial step toward developing the molecular tools necessary to investigate the functional capabilities of TNA by in vitro selection, we have screened a variety of DNA polymerases for activity on a TNA template. We report that despite having a repeating unit that is one atom shorter than that of DNA, several polymerases showed surprisingly good ability to copy limited stretches of TNA.     

Homeopathic ligand-free palladium as a catalyst in the heck reaction. A comparison with a palladacycle

[reaction: see text] Ligand-free Pd(OAc)(2) can be used as a catalyst in the Heck reaction of aryl bromides as long as the amount of catalyst is kept between 0.01 and 0.1 mol %. At higher concentrations palladium black forms and the reaction stops. The actual catalyst is monomeric. Palladacycles merely serve as a source of ligand-free palladium in Heck reactions of aryl bromides.     

Influence of nano-structure on electrolytic properties in CeO2 based system

Doped ceria (CeO₂) compounds are fluorite type oxides that show oxygen ionic conductivity higher than yttria stabilized zirconia, in oxidizing atmosphere. In order to improve the conductivity, the effective index was suggested to maximize the oxygen ionic conductivity in doped CeO₂ based oxides. In addition, the true microstructure of doped CeO₂ was observed at atomic scale for conclusion of conduction mechanism. Doped CeO₂ had small domains (10-50 nm) with ordered structure in a grain. It is found that the electrolytic properties strongly depended on the nano-structural feature at atomic scale in doped CeO₂ electrolyte. This revised version was published online in August 2006 with corrections to the Cover Date.     

Synthesis and characterization of the new 22-π aromatic furan-containing macrocycle, “ozaphyrin”

The new 22-π, aromatic “pentaplanar” macrocycle, ozaphyrin ( 6 ), has been synthesized by a McMurry coupling of 5,5′-diformyl-4,4′-dipropyl-2,2′-bipyrrole ( 1 ) with 2,5-bis(5-formyl-4-propyl-2-pyrrolyl)furan ( 5 ). This synthetic pathway to ozaphyrin and its characterization by ¹H nmr spectroscopy, uv-visible spectroscopy, cyclic voltammetry, and X-ray crystallography are described. The structure consists of layers of planar, staggered macrocycles stacked perpendicular to the α-axis. Ozaphyrin crystallizes with four formula units in the monoclinic space group C⁵_2h-P2₁/n in a cell of dimensions a = 10.481(7) Å, b = 17.353(17) Å, c = 18.726(12) Å, and β = 102.84(5)° (108 K). The structure has been refined on F² (5171 unique reflections, 411 variables) to R_w(F_o²) = 0.165. The conventional agreement index R(F) is 0.074 for the 3289 reflections have F_o²>2o(F_o²).     

Elektronentransfer und Ionenpaar-Bildung. 40. Mitteilung. Einkristall-Struktur von Bis(Natrium-1,1′-Biphenyl-2-thiolat-Diglyme): Ein Zwischenprodukt der reduktiven Ringöffnung von Dibenzothiophen

Electron Transfer and Ion Pair Formation Single Crystal Structure of Bis(sodium 1,1′-biphenyl-2-thiolate-diglyme): An Intermediate in the Reductive Ring Opening of Dibenzothiophene On Na-metal reduction of dibenzothiophene, the five-membered sulfur ring opens to form a colorless 1,1′-biphenyl-2-thiolate sodium salt, which, according to its single-crystal structure determination, is a dimer containing a four-membered, twice diglyme-solvated ring (diglyme···Na^⊕?SR)₂. Additional measurements provide the following information: cyclic voltammetry in aprotic MeCN solution shows one quasi-reversible electron transfer at E = ?2.58 V. The dibenzothiophene radical anion can be generated in aprotic THF solution at a K mirror and characterized by an 81-line ESR spectrum and its simulation. This blue species is also the first UV/VIS detectable one before the solution changes via green (due to blue + yellow color mixing) to yellow, yielding across an isosbestic point a second and diamagnetic compound. All of the above results suggest a consecutive two-electron reduction followed by an intersystem protonation, M + (e^?) → M^.? (blue) + (e^?) → (M^??, yellow?) + (H^⊕) → MH^? (colorless), to yield the crystallized and structurally characterized reaction intermediate. The diglyme-solvated sodium-salt dimer provides a basis for a quantum-chemical discussion of some facets of the most likely microscopic reduction pathway.