Crystal structure of three solvated Alpinumisoflavones

Single crystals of alpinumisoflavone, C₂₀H₁₆O₅, {systematic name: 5-hydroxy-7-(4 hydroxyphenyl)-2, 2-dimethyl-2H, 6H-benzo [1, 2-b: 5, 4-b′]-dipyran-6-one}, solvated with water, methanol, and ethanol, have been obtained. The incorporation of the solvent molecules into the crystal structure creates a new short inter-molecular O–H···O and C–H···O contacts between the alpinumisoflavone moiety and its solvate molecule. The temperatures at which the solvated molecules lose their solvent molecules are 53, 54, and 65 °C for water, methanol, and ethanol, respectively. The observed temperatures at which the solvates efflorescence are reflective of the progressive increase in mass of the solvates from water to ethanol in the series. The benzopyrone moiety shows the usual planar conformation with the pyran ring deformed into a half-chair conformer as seen previously in the other analogous compounds with puckering parameters [Å], 0.2656(8), 0.3703(8), and 0.3957(9), respectively, for the water, ethanol, and methanol solvates. These are higher than the non-solvated alpinumisoflavone compound previously studied. The size of a substituent group proximal to the keto group has a more pronounced effect on the degree of puckering than substitution on the terminal phenyl ring. The attached phenyl ring shows consistent out-of-plane twist from the mean plane of the benzopyrone system as observed previously for this class of compounds. The observed dihedral angles are 30.26(3), 37.75(3), and 34.00(3)°, respectively, for the water, methanol, and ethanol solvates.     

Determination of the rank of an integration lattice

The continuing and widespread use of lattice rules for high-dimensional numerical quadrature is driving the development of a rich and detailed theory. Part of this theory is devoted to computer searches for rules, appropriate to particular situations. In some applications, one is interested in obtaining the (lattice) rank of a lattice rule Q(Λ) directly from the elements of a generator matrix B (possibly in upper triangular lattice form) of the corresponding dual lattice Λ^⊥. We treat this problem in detail, demonstrating the connections between this (lattice) rank and the conventional matrix rank deficiency of modulo p versions of B. AMS subject classification (2000) 65D30     

Computation of the string tension in four-dimensional Yang–Mills theory using large N reduction

Continuum reduction and Monte Carlo simulation are used to calculate the heavy quark potential and the string tension in large N Yang–Mills theory in four dimensions. The potential is calculated out to a separation of nine lattice units on a lattice with extent six in each direction.     

Vibrational spectra and potential energy distributions for 1‐benzyl‐1H‐imidazole by normal coordinate analysis

The Fourier‐transform (FT) Raman and infrared (IR) spectra of the crystallized novel pharmaceutical molecule 1‐benzyl‐1H‐imidazole (BI) were recorded and analyzed. The geometry, intermolecular hydrogen bond, and harmonic vibrational wavenumbers of BI were investigated with the help of B3PW91 density functional theory (DFT) methods. The detailed interpretation of the vibrational spectra was carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The aromaticities of the imidazole and phenyl rings were studied using the standard harmonic oscillator model of aromaticity (HOMA) index. Natural bond orbital (NBO) analysis on BI was carried out to demonstrate the various intramolecular interactions that are responsible for the stabilization of this molecule leading to its medicinal activity. The potential energy profile corresponding to the torsion around the bridge bonds connecting the two rings was drawn to explain the steric and/or electronic effects using potential energy surface (PES) scan studies. The pronounced double‐bond localization in the imidazole ring upon intermolecular H‐bonding appears to be the cause for its enhanced aromaticity. Copyright © 2008 John Wiley & Sons, Ltd.     

Theoretical and vibrational spectral investigation of sodium salt of acenocoumarol

The FT‐IR and FT‐Raman spectra of sodium salt of 4‐hydroxy‐3[1‐(4‐nitrophenyl)‐3‐oxobutyl]‐2H‐1‐benzopyran‐2‐one (acenocoumarol sodium salt) in solid phase have been recorded and analyzed. The optimization geometry, intramolecular hydrogen bonding, and harmonic vibrational wavenumbers of acenocoumarol sodium salt have been investigated with the help of B3LYP density functional theory (DFT) methods. The infrared and Raman spectra were predicted theoretically from the calculated intensities. Natural bond orbital (NBO) analysis indicates the presence of C H···O hydrogen bonding in the molecule. The first static hyperpolarizability of the molecule has been computed. Copyright © 2009 John Wiley & Sons, Ltd.     

First order molecular hyperpolarizabilities and intramolecular charge transfer from the vibrational spectra of NLO material: ethyl‐3‐(3, 4‐dihydroxyphenyl)‐2‐propenoate

As part of the efforts for the design of new organic nonlinear optical(NLO) materials with high efficiency for present day technological requirements, a comprehensive investigation on the intramolecular charge transfer(CT) of an efficient π‐conjugated potential push–pull NLO chromophore, ethyl‐3‐(3,4‐dihydroxyphenyl)‐2‐propenoate(EDP) to a strong electron‐acceptor group through the π‐conjugated bridge has been carried out from their vibrational spectra. The first hyperpolarizabilities of caffeic derivatives are investigated by ab initio method. The NLO efficiency is experimentally measured by powder efficiency experiment. The strongest vibrational modes contributing to the electro‐optic effect from the simultaneous infrared(IR) and Raman activities of the ring CC stretching modes, in‐plane deformation modes, and the umbrella mode of the methyl groups have been identified and analyzed unambiguously. The influence of electronic effects, hyperconjugation and backdonation, on the C H stretching vibrations of both methyl and methylene groups causing the decrease of stretching wavenumbers and IR intensities has been extensively investigated. Copyright © 2009 John Wiley & Sons, Ltd.     

NIR‐FT Raman and FT‐IR spectral investigations of the nonlinear optical chromophore p‐bromoacetanilide

Vibrational spectral analysis of the hydrogen‐bonded nonlinear optical (NLO) material p‐bromo acetanilide (PBA) was carried out using NIR‐FT‐Raman and FT‐IR spectroscopy. Ab initio molecular orbital computations were performed at HF/6‐31G (d) level to derive equilibrium geometry, vibrational wavenumbers, intensities and first hyperpolarizability. The lowering of the imino stretching wavenumbers suggests the existence of strong intermolecular N H···O hydrogen bonding, which was substantiated by the natural bond orbital (NBO) analysis. The vibrational spectra confirm that the charge‐transfer interaction between the  NHCOCH₃ group and—Br through phenyl ring is responsible for simultaneous strong IR and Raman activation of the ring mode 8a. Vibrational analysis indicates that the lowering of stretching wavenumbers of methyl group due to electronic effects simultaneously caused by induction and hyperconjugation is due to the presence of the oxygen atom. The presence of blue‐shifting H‐bonds of CH stretching wavenumbers, simultaneous activation of carbonyl stretching mode, the strong activity of low‐wavenumber H‐bond stretching vibrations and the role of intramolecular charge transfer in making the molecule NLO active have been analyzed on the basis of the vibrational spectral features. Copyright © 2007 John Wiley & Sons, Ltd.     

Purification and Characterization of PRL Protein Tyrosine Phosphatases

PRLs constitute a subfamily of protein tyrosine phosphatases(PTPs). In the present paper are reported the molecular cloning, expression, purification, and characterization of all the three members of the PRL enzymes in human and the only PRL in C. elegans. These enzymes were expressed as glutathione S-transferase (GST) fusion proteins in DE3pLysS E. coil cells, and the recombinant fusion proteins were purified on glutathione-Sepharose affinity columns. Having been cleaved with thrombin, GST-free enzymes were further purified on an S-100 Sepharose gel filtration column. The purified proteins show single polypeptide bands on SDS-polyacrylamide gel electrophoresis. With para-nitrophenyl phosphate(p-NPP) as a substrate, PRLs exhibit classical Michaelis-Menten kinetics with Vmax values two orders of magnitude smaller than those of classic PTPs. The responses of PRLs to ionic strength, metal ions and phosphatase inhibitors are similar to those of other characterized PTPs, but their optimal pH values are different. These data thus reveal distinct common biochemical properties of PRL subfamily PTPs as well.     

Design,Synthesis and Biological Activity of Benzimidazole and Aminophenol Based Factor Xa Inhibitors

The serine protease factor Xa (FXa) is a key enzyme in the blood coagulation cascade, acting at the convergent point of the extrinsic and intrinsic pathways. The serine protease factor Xa (FXa) is a key enzyme in the blood coagulation cascade, acting at the convergent point of the extrinsic and intrinsic pathways. In our search for Fxa inhibitors as novel anticoagulants we identified the active isomer of the published FXa inhibitor, 2,7-bis-(4-amidinobenzilidine)-cycloheptan-l-one (BABCH), as the (Z, Z) isomer (ZK-805412, FXa Ki=0.66 nM). This photochemically labile (Z, Z) isomer has served as a conformationally rigid template for the development of distinct classes of potent, selective and orally active FXa inhibitors. Template evolution, in vitro SAR studies as well as our efforts to optimize in vivo parameters will be discussed.