Improved cycle sequencing of GC-rich DNA template

Even when DNA sequencing of purified DNA template failed under the optimal condition, it can be generally contributed to high GC content. GC-rich region of template causes a secondary structure to produce shorter readable sequence. To solve this problem, the sequencing reaction was modified by using dimethyl sulfoxide (DMSO). It was found that 5% (v/v) of DMSO in the reaction mixture recovers sequencing signal intensity with reduced frequency of ambiguous bases. When DMSO was added to sequencing reaction of DNA template with normal GC content, it did not show any adverse effect. Sequencing accuracy and unambiguous base frequency were significantly improved at concentration of 2% to 5% (v/v) DMSO in GC-rich DNA template. DMSO has been empirically introduced to enhance the efficiency of PCR in GC-rich templates. However, the underlying mechanism of improved cycle sequencing by DMSO is unknown. Thus, cycle sequencing reaction was remodified with other additives such as N-methyl imidazole, N-methyl2-pyrrolidone, N-methyl-2-pyridone and glycerol, possessing the similar chemical properties as DMSO. Most of methyl nitrogen ring-containing chemicals did not improve sequencing accuracy, whereas only glycerol mimicked the positive effect of DMSO by the same extent. In the present study, we suggest that the treatment of DMSO improve cycle sequencing by the alteration of structural conformation of GC-rich DNA template.     

Necessity and sufficiency of f being a divergence for vanishing of variational derivatives of f: General case

Concise proofs are presented for the necessity and sufficiency of f being a divergence for the variational derivatives of f to vanish identically, where f is a function of N functions of n variables, their partial derivatives to arbitrary order, and the n variables. The approach is conventional.     

Conventional formulations of Noether's theorem in classical field theory

The role of invariance considerations in conventional formulations of Noether's theorem in classical field theory is investigated and found weaker than is usually supposed. It is shown how nonfulfilment of the conventional assumptions going into Noether's theorem brings about nonconservation.     

Effect of surfactant counterion and organic modifier on the properties of surfactant vesicles in electrokinetic chromatography

Counterion and organic modifier are two parameters in EKC that can be varied in order to obtain improved solubility, selectivity, and efficiency. The effect of changing surfactant counterion and/or organic modifier on the chromatographic and electrophoretic properties of cetyltrimethylammonium bromide (CTAB)/sodium octyl sulfate (SOS) vesicles is examined in EKC. The vesicles are prepared in a 1:3.66 cationic/ anionic mole ratio for a total surfactant concentration of 69 mM. The cationic CTAB is replaced by cetyltrimethylammonium chloride (CTAC) and the first use of CTAC/SOS vesicles is reported. The mean diameter of the CTAC/SOS vesicles is 96 nm while that of the CTAB/SOS vesicles is 85 nm. A class I modifier (2-amino-1-butanol) and a class II modifier (acetonitrile) have similar effects on the EOF, elution range, methylene selectivity, and the efficiency of the CTAB/SOS vesicles and the CTAC/SOS vesicles. Upon addition of 10% ACN, there is roughly a 10-fold increase in the efficiency of heptanophenone, a model hydrophobic compound, compared to the efficiency using unmodified vesicles. Linear free energy relationship (LFER) analysis using the Abraham solvation model is employed to characterize solute-vesicle interactions. The results suggest that organic modifier-vesicle interactions depend somewhat on the counterion.     

Cavity QED with quantized center of mass motion

We investigate the quantum fluctuations of a single atom in a weakly driven cavity, where the center of mass motion of the atom is quantized in one dimension. We present analytic results for the second order intensity correlation function g((2))(tau) and the intensity-field correlation function h(theta)(tau), for transmitted light in the weak driving field limit. We find that the coupling of the center of mass motion to the intracavity field mode can be deleterious to nonclassical effects in photon statistics and field-intensity correlations, and compare the use of trapped atoms in a cavity to atomic beams.     

NIR-FT Raman and infrared spectra and ab initio computations of glycinium oxalate

The single crystals of glycinium oxalate are grown by slow evaporation technique and vibrational spectral analysis is carried out using NIR-FT Raman and FT-IR spectra. The ab initio quantum computations are also performed at HF/6-31 G(d) level to derive the optimized geometry, atomic charges and vibrational frequencies of the glycinium oxalate molecule. Vibrational analysis indicates the presence of peculiar intermolecular C-H...O hydrogen bonding interaction producing "blue shift" of C-H stretching frequency. The vibrational spectra confirm the existence of NH3(+) in glycinium oxalate. Hydroxyl vibrations with different inter and intra molecular H-bonding are analysed, supported by computed results.     

Kinetics of graft copolymerization of methyl methacrylate onto polychloroprene with tricaprylylmethylammonium chloride as a phase‐transfer catalyst

The phase‐transfer catalyzed graft copolymerization of methyl methacrylate onto polychloroprene was carried out using tricaprylylmethylammonium chloride as a phase‐transfer catalyst in a two‐phase system of an aqueous Na₂S₂O₈ solution and toluene at 55 °C under a nitrogen atmosphere. The initial rate of graft copolymerization was expressed as the combined terms of quaternary onium cation and peroxydisulfate anion in the aqueous phase rather than the fed concentrations of catalyst and Na₂S₂O₈. The observed initial rate of graft copolymerization was used to analyze the graft copolymerization mechanism with a cycle phase‐transfer initiation step in the heterogeneous liquid–liquid system. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 3543–3549, 2000     

Ultraviolet protection factors for clothing: an intercomparison of measurement systems

In recent years the need to standardize measurement protocols for quantifying the degree of ultraviolet radiation (UVR) protection provided by clothing has led to the introduction of a number of standards around the world. To date, these standards have specified spectral measurements of UVR transmission by clothing and fabrics. Development of a standard test method has become an important part of the testing process, and this article presents results from an intercomparison involving 10 independent testing laboratories and 11 different UVR transmission measurement instruments. In addition to comparing the measured ultraviolet protection factors (UPF), this intercomparison also incorporates detailed scan results from all 10 laboratories and highlights differences in performance of the various instruments in different wavelength regions. Careful examination of these differences can indicate where changes to the systems could be made to allow improvements both in equipment performance and in agreement of the final results. The variability in the measurements of UPF in this study suggest that the protection categories in standards may need to be broadened.