Oligovalent amyloid-binding agents reduce SEVI-mediated enhancement of HIV-1 infection

This paper evaluates the use of oligovalent amyloid-binding molecules as potential agents that can reduce the enhancement of human immunodeficiency virus-1 (HIV-1) infection in cells by semen-derived enhancer of virus infection (SEVI) fibrils. These naturally occurring amyloid fibrils found in semen have been implicated as mediators that can facilitate the attachment and internalization of HIV-1 virions to immune cells. Molecules that are capable of reducing the role of SEVI in HIV-1 infection may, therefore, represent a novel strategy to reduce the rate of sexual transmission of HIV-1 in humans. Here, we evaluated a set of synthetic, oligovalent derivatives of benzothiazole aniline (BTA, a known amyloid-binding molecule) for their capability to bind cooperatively to aggregated amyloid peptides and to neutralize the effects of SEVI in HIV-1 infection. We demonstrate that these BTA derivatives exhibit a general trend of increased binding to aggregated amyloids as a function of increasing valence number of the oligomer. Importantly, we find that oligomers of BTA show improved capability to reduce SEVI-mediated infection of HIV-1 in cells compared to a BTA monomer, with the pentamer exhibiting a 65-fold improvement in efficacy compared to a previously reported monomeric BTA derivative. These results, thus, support the use of amyloid-targeting molecules as potential supplements for microbicides to curb the spread of HIV-1 through sexual contact.     

Electrostatic energy of polygonal charge distributions

An asymptotic series for the electrostatic energy E₁(N){\mathcal{E}_1(N)} of an N-gonal charge distribution, i.e., a set of unit charges occupying vertices of a regular N-gon with a unit circumradius, is derived. Application of Padé approximants to truncations of this expansion produces compact approximate formulae capable of estimating E₁(N){\mathcal{E}_1(N)} with great accuracy. A closed-form expression for the energy of electrostatic interaction of two polygonal charge distributions is obtained from the respective Fourier series. The availability of this expression allows for a rapid calculation of the relevant energy with computational effort independent of the numbers of particles involved.     

Synthesis of lead chalcogenide nanocrystals and study of charge transfer in blends of PbSe nanocrystals and poly(3-hexylthiophene)

Nearly monodisperse lead chalcogenide (PbE, E = S, Se, or Te) semiconductor quantum dots of controllable shape have been produced via a novel synthesis which includes the occurrence of in situ formed Pb(0) particles. Tunable size and shape are achieved through appropriate choice of the precursor type and the stabilizer. As precursor, we use, on the one hand, lead oxide or lead acetate, on the other hand, tellurium, selenium, or sulfur powder dissolved in trioctylphosphine (TOP), tributylphosphine (TBP), or 1-octadecene (ODE). Oleic acid (OA) and various amines, as well as TOP and TBP are used for stabilization. With respect to possible application in hybrid solar cells, the surface of as-synthesized spherical PbSe nanocrystals was investigated by nuclear magnetic resonance (NMR), mass spectrometry (MS) and thermogravimetric analysis (TGA). As an important result, it was found that the surface is not mostly covered by oleic acid after synthesis, but by a phosphorus compound. We also applied a ligand exchange procedure with hexylamine and found evidence for the successful attachment of hexylamine to the nanocrystal surface. Additionally, charge separation between these nanoparticles and the conjugated polymer poly(3-hexylthiophene) (P3HT) is studied by electron spin resonance and photoinduced absorption spectroscopy. The spectra obtained suggest that charges can be produced successfully by photoinduced charge transfer.     

Chirality measures of α-amino acids

To measure molecular chirality, the molecule is treated as a finite set of points in the Euclidean R(3) space supplemented by k properties, p(1)((i)), p(2)((i)), ..., p(k)((i)) assigned to the ith atom, which constitute a point in the Property P(k) space. Chirality measures are described as the distance between a molecule and its mirror image minimized over all its arbitrary orientation-preserving isometries in the R(3) × P(k) Cartesian product space. Following this formalism, different chirality measures can be estimated by taking into consideration different sets of atomic properties. Here, for α-amino acid zwitterionic structures taken from the Cambridge Structural Database and for all 1684 neutral conformers of 19 biogenic α-amino acid molecules, except glycine and cystine, found at the B3LYP/6-31G** level, chirality measures have been calculated by a CHIMEA program written in this project. It is demonstrated that there is a significant correlation between the measures determined for the α-amino acid zwitterions in crystals and the neutral forms in the gas phase. Performance of the studied chirality measures with changes of the basis set and computation method was also checked. An exemplary quantitative structure–activity relationship (QSAR) application of the chirality measures was presented by an introductory model for the benchmark Cramer data set of steroidal ligands of the sex-hormone binding globulin.     

Expanding the tools available for direct ortho cupration--targeting lithium phosphidocuprates

Reaction of in situ generated lithium phosphides with 0.5 eq. Cu(I) is employed as a means of targeting lithium phosphidocuprates of either Gilman- or Lipshutz-type formulation--e.g., (R(2)P)(2)CuLi·n(LiX) (n = 0, 1). For R = Ph, X = CN in toluene followed by thf or R = Ph, X = I in thf/toluene an unexpected product results. [(Ph(2)P)(6)Cu(4)][Li·4thf](2)1 reveals an ion-separated structure in the solid state, with solvated lithium cations countering the charge on an adamantyl dianion [(Ph(2)P)(6)Cu(4)](2-). Deployment of R = Ph, X = CN in thf affords a novel network based on the dimer of Ph(2)PCu(CN)Li·2thf 2 with trianions based on 6-membered (PCu)(3) rings acting as nodes in the supramolecular array and solvated alkali metal counter-ions completing the linkers. Cy(2)PLi (Cy = cyclohexyl) has been reacted with CuCN in thf/toluene to yield Gilman-type lithium bis(phosphido)cuprate (Cy(2)P)(2)CuLi·2thf 3 by the exclusion of in situ generated LiCN. A polymer is noted in the solid state.     

The reproductive cycle in the male gonads of Danio rerio (Teleostei, Cyprinidae). Stereological analysis

The studies in Danio rerio testis were performed during the 8 weeks between the first and second spawning. The testes were dissected from the animals and fixed after successive weeks. Semithin epon sections were analysed using stereological methods to assess the relative volumes of cysts containing successive stages of spermatogenesis. During the first three weeks the cysts with spermatogonia B have the highest relative volumes. At the 2nd week the first cysts with spermatocytes appear. At the 4th week the first cysts containing early spermatids are formed. During the 4th, 5th and the 6th weeks of the gonad cycle cysts containing spermatocytes I are the most numerous but one can also see volumes of cysts filled with late spermatids and sperm cells growing. In the 7th week of the cycle the volumes of cysts containing early spermatids as well as those containing late spermatids are very large. Many cysts have released completely formed sperm cells into the tubule lumen. In the 8th week of the gonad cycle the testis tubules are filled with sperm cells. In many places the tubule walls break off and join to make vast chambers filled with sperm. Therefore, the germinal epithelium of the D. rerio testis at this stage turns into a "discontinuous" type.     

Cancer cell recognition--mechanical phenotype

The major characteristics of cancer metastasis is the ability of the primary tumor cells to migrate by way of the blood or lymph vessels and to form tumors at multiple, distant sites. There are evidences that cancer progression is characterized by disruption and/or reorganization of cytoskeleton (i.e. cellular scaffold). This is accompanied by various molecular alterations influencing the overall mechanical resistance of cells. Current approach in diagnosis focuses mainly on microbiological, immunological, and pathological aspects rather than on the biomechanics of diseases. The determination of mechanical properties of an individual living cell has became possible with the development of local measurement techniques, such as atomic force microscopy, magnetic or optical tweezers. The advantage of them lies in the capability to measure living cells at a single cell level and in liquid conditions, close to natural environment. Here, we present the studies on mechanical properties of single cells originating from various cancers. The results show that, independently of the cancer type (bladder, melanoma, prostate, breast and colon), single cells are characterized by the lower Young's modulus, denoting higher deformability of cancerous cells. However, the obtained Young's modulus values were dependent on various factors, like the properties of substrates used for cell growth, force loading rate, or indentation depth. Their influence on elastic properties of cells was considered. Based on these findings, the identification of cancerous cells based on their elastic properties was performed. These results proved the AFM capability in recognition of a single, mechanically altered cell, also in cases when morphological changes are not visible. The quantitative analysis of cell deformability carried out using normal (reference) and cancerous cells and, more precisely, their characterization (qualitative and quantitative) can have a significant impact on the development of methodological approaches toward precise identification of pathological cells and would allow for more effective detection of cancer-related changes.     

Kojic acid derivatives as powerful chelators for iron(III) and aluminium(III)

Proceeding from a ligand constituted by two units of kojic acid linked by a methylene group, which proved a very promising chelator for excess iron(III) and aluminium(III) pathologies, two new ligands have been designed and synthesized: one by adding a vanillin molecule in the linker and the second by adding an o-vanillin molecule. Both these ligands, on the basis of complex formation studies presented here, show significant potential as therapeutic agents for iron and aluminium overload. Protonation constants of the pure ligands have been determined by potentiometry, and standard reaction heats by calorimetry. Hydrogen bonding plays an important role in the protonation reactions. The crystal structures of both ligands have furthermore been resolved. Complex formation equilibria for the iron complexes have been studied by combined potentiometry-spectrophotometry and those of aluminium by potentiometry alone. All complexes were found to contain two metal ions. NMR diffusion measurements hardly applied to complex formation equilibria and the results of density functional theory (DFT) calculations were powerful tools in confirming the proposed reaction model and in evaluating the relative stabilities of the products. Further support was given by NMR chemical shift measurements and electrospray mass spectrometry.     

Multifunctional multivalency: a focused library of polymeric cholera toxin antagonists

Structural pre-organization of the multivalent ligands is important for successful interaction with multimeric proteins. Polymer-based heterobifunctional ligands that contain pendant groups prearranged into heterodimers can be used to probe the active site and surrounding area of the receptor. Here we describe the synthesis and activities of a series of galactose conjugates on polyacrylamide and dextran. Conjugation of a second fragment resulted in nanomolar inhibitors of cholera toxin, while the galactose-only progenitors showed no detectable activity.