l-Seryl-l-leucine

The structure of l -seryl-l -leucine, C₉H₁₈N₂O₄, has been determined and analysed in relation to the geometries of its amino acid constituents. The most important feature is the different conformational behaviour of the side chains at the C^β atoms; a less pronounced discrepancy concerns the orientation of the C=O bond with respect to the C^α—N bond. The conformational preferences of these torsion angles are also established for related structures stored in the Cambridge Structural Database [Allen & Kennard (1993). Chem.Des.Autom. News, 8 , 1, 31–37]; the title structure compares well with these data. The mol­ecules are organized in double layers, with the hydro­philic faces linked by an extensive hydrogen-bonding network, as in l -leucine.     

Kinetics and mechanism of the thermal gas‐phase oxidation of perfluorobutene‐2 in presence of trifluoromethyl hypofluorite

The oxidation of perfluorobutene‐2 (C₄F₈) initiated by trifluoromethyl hypofluorite (CF₃OF) in presence of O₂ has been studied at 323.1, 332.6, 342.5, and 352.0 K, using a conventional static system. The initial pressure of CF₃OF was varied between 4.8 and 23.6 Torr, that of C₄F₈ between 48.7 and 302.4 Torr, and that of O₂ between 51.5 and 270.4 Torr. Several runs were made in presence of 325.5–451.2 Torr of N₂. The main products were COF₂, CF₃C(O)F, and CF₃OC(O)F. Small amounts of compound containing ? CF(CF₃)? O? C(O)CF₃ group were also formed, as detected by ¹³C NMR spectroscopy. The oxidation is a homogeneous short‐chain reaction, attaining, at the pressure of O₂ used, the pseudo‐zero‐order condition with respect to O₂ as reactant. The reaction is independent of the total pressure. Its basic steps are as follows: the thermal generation of CF₃O^? radicals by the abstraction of fluorine atom of CF₃OF by C₄F₈, the addition of CF₃O^? to the alkene, the formation of perfluoroalkoxy radicals RO^? in presence of O₂, and the decomposition of these radicals via the C? C bond scission, giving products containing ? C(O)F end group and reforming RO^? and CF₃O^? radicals. The mechanism consistent with experimental results is postulated. © 2003 Wiley Periodicals, Inc. Int J Chem Kinet 35: 532–541, 2003     

Influence of the soft segment length on the properties of water‐cured poly(carbonate‐urethane‐urea)s

Poly(carbonate‐urethane‐urea)s (PCUU) based on oligocarbonate diols (M_n ≈ 2000) with different length of the hydrocarbon chain as soft segments were synthesized and investigated. Carbonate oligomerols were obtained in a two‐step method from dimethyl carbonate (DMC) and linear α,ω‐diols (1,4‐butanediol, 1,5‐pentanediol, 1,6‐hexanediol, 1,9‐nonanediol, 1,10‐dekanediol and 1,12‐dodecanediol). Oligo(trimethylene carbonate) diol was synthesized using ring‐opening polymerization of trimethylence carbonate. PCUUs were obtained by prepolymer method using isophorone diisocyanate (IPDI) and water as a chain extender. Changes in polymers properties with increase of methylene group number between carbonate linkages were investigated by differential scanning calorimetry (DSC), dynamic mechanical thermal analysis (DMTA), tensile strength and hardness measurements. The thermal stability was also analyzed by means of thermogravimetric analysis (TGA). Based on FTIR analysis influence of methylene groups number between carbonate linkages on phase separation and concentration of allophanate and biuret groups in the samples were investigated. The obtained poly(carbonate‐urethane‐urea)s exhibited very good mechanical properties. Tensile strength and elongation at break were 40 MPa and 400–600%, respectively, depending on the oligocarbonate used. Copyright © 2014 John Wiley & Sons, Ltd.     

The case of triethylammonium cation loss during purification of certain nucleotide analogues: a cautionary note

Nucleotides, their analogues, and other phosphate esters and phosphoramidates often contain the triethylammonium cation as a counterion. We found that this may be lost during chromatographic purification or concentration of solutions, yielding products in acidic forms or containing sub-stoichiometric amounts of the counterion. This in turn may be detrimental, e.g., due to possible decomposition of a compound or inaccurate sample preparation. Correlations between the structure of studied compounds and their susceptibility for cation loss were analyzed. Modifications in preparative techniques were developed to obtain the studied compounds with stoichiometric anion to cation ratios.

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Graphical Abstract Triethylammonium salts of phosphate esters and phosphoramidates may lose the cationic component during chromatography or evaporation of solvent

     

Missing value imputation strategies for metabolomics data

The origin of missing values can be caused by different reasons and depending on these origins missing values should be considered differently and dealt with in different ways. In this research, four methods of imputation have been compared with respect to revealing their effects on the normality and variance of data, on statistical significance and on the approximation of a suitable threshold to accept missing data as truly missing. Additionally, the effects of different strategies for controlling familywise error rate or false discovery and how they work with the different strategies for missing value imputation have been evaluated. Missing values were found to affect normality and variance of data and k‐means nearest neighbour imputation was the best method tested for restoring this. Bonferroni correction was the best method for maximizing true positives and minimizing false positives and it was observed that as low as 40% missing data could be truly missing. The range between 40 and 70% missing values was defined as a “gray area” and therefore a strategy has been proposed that provides a balance between the optimal imputation strategy that was k‐means nearest neighbor and the best approximation of positioning real zeros.     

New approach to the determination phosphorothioate oligonucleotides by ultra high performance liquid chromatography coupled with inductively coupled plasma mass spectrometry

This text presents a novel method for the separation and detection of phosphorothioate oligonucleotides with the use of ion pair ultra high performance liquid chromatography coupled with inductively coupled plasma mass spectrometry The research showed that hexafluoroisopropanol/triethylamine based mobile phases may be successfully used when liquid chromatography is coupled with such elemental detection. However, the concentration of both HFIP and TEA influences the final result. The lower concentration of HFIP, the lower the background in ICP-MS and the greater the sensitivity. The method applied for the analysis of serum samples was based on high resolution inductively coupled plasma mass spectrometry. Utilization of this method allows determination of fifty times lower quantity of phosphorothioate oligonucleotides than in the case of quadrupole mass analyzer. Monitoring of ³¹P may be used to quantify these compounds at the level of 80 μg L⁻¹, while simultaneous determination of sulfur is very useful for qualitative analysis. Moreover, the results presented in this paper demonstrate the practical applicability of coupling LC with ICP-MS in determining phosphorothioate oligonucleotides and their metabolites in serum within 7 min with a very good sensitivity. The method was linear in the concentration range between 0.2 and 3 mg L⁻¹. The limit of detection was in the range of 0.07 and 0.13 mg L⁻¹. Accuracy varied with concentration, but was in the range of 3%.     

Acetate platinum(II) compound with 5,7-ditertbutyl-1,2,4-triazolo[1,5-a]pyrimidine that overcomes cisplatin resistance: structural characterization,in vitro cytotoxicity,and kinetic studies

The reaction of silver acetate with cis-[PtI₂(dbtp)₂], where dbtp = 5,7-ditertbutyl-1,2,4-triazolo-[1,5-a]pyrimidine, yielded cis-[Pt(OOCCH₃)₂(dbtp)₂]·dmf (1). The complex has been analyzed by multinuclear magnetic resonance (¹H, ¹³C, ¹⁵N), IR, and Raman. The compound formed two rotamers in CDCl₃ and its spatial structures have been optimized using computational calculation. It was found that head-to-tail rotamer (1a) is more stable than its head-to-head counterpart (1b). In vitro antiproliferative activity against four tumor cell lines (A549, T47D, FaDu, and A2780cis) revealed in all cases significant cytotoxicity (IC₅₀ = 0.26–1.80 μM), possessing IC₅₀ values at least fivefold lower than cisplatin, carboplatin, and oxaliplatin (except A2780cis). The remarkable in vitro activity against T47D and A2780cis suggested the ability to overcome cisplatin resistance in these types of tumor cells. In addition, in vitro toxicity was evaluated against BALB/3T3 and has shown that the lipophilic platinum(II) complex (1) inhibits cell proliferation weaker than cisplatin and oxaliplatin. Additionally, cis-[Pt(OOCCH₃)₂(dbtp)₂]·dmf exhibited selective activity, in contrast to cisplatin or oxaliplatin.