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101.
Wooseup Hwang Jejoong Yoo In‐Chul Hwang Jiyeon Lee Young Ho Ko Hyun Woo Kim Younghoon Kim Yeonsang Lee Moon Young Hur Kyeng Min Park Jongcheol Seo Kangkyun Baek Kimoon Kim 《Angewandte Chemie (International ed. in English)》2020,59(9):3460-3464
Hierarchical self‐assembly of building blocks over multiple length scales is ubiquitous in living organisms. Microtubules are one of the principal cellular components formed by hierarchical self‐assembly of nanometer‐sized tubulin heterodimers into protofilaments, which then associate to form micron‐length‐scale, multi‐stranded tubes. This peculiar biological process is now mimicked with a fully synthetic molecule, which forms a 1:1 host‐guest complex with cucurbit[7]uril as a globular building block, and then polymerizes into linear poly‐pseudorotaxanes that associate laterally with each other in a self‐shape‐complementary manner to form a tubular structure with a length over tens of micrometers. Molecular dynamic simulations suggest that the tubular assembly consists of eight poly‐pseudorotaxanes that wind together to form a 4.5 nm wide multi‐stranded tubule. 相似文献
102.
Jinny Claire Lee Hye Yun Kim Sejin Lee Jisu Shin Hyunjin Vincent Kim Kyeonghwan Kim Seungyeop Baek Donghee Lee Hanna Jeon DaWon Kim Seung‐Hoon Yang Gyoonhee Han Keunwan Park Jaeho Choi Jinwoo Park Jason A. Moss Kim D. Janda YoungSoo Kim 《Angewandte Chemie (International ed. in English)》2020,59(28):11491-11500
Amyloid‐β (Aβ) oligomers are implicated in Alzheimer disease (AD). However, their unstable nature and heterogeneous state disrupts elucidation of their explicit role in AD progression, impeding the development of tools targeting soluble Aβ oligomers. Herein parallel and anti‐parallel variants of Aβ(1–40) dimers were designed and synthesized, and their pathogenic properties in AD models characterized. Anti‐parallel dimers induced cognitive impairments with increased amyloidogenesis and cytotoxicity, and this dimer was then used in a screening platform. Through screening, two FDA‐approved drugs, Oxytetracycline and Sunitinib, were identified to dissociate Aβ oligomers and plaques to monomers in 5XFAD transgenic mice. In addition, fluorescent Astrophloxine was shown to detect aggregated Aβ in brain tissue and cerebrospinal fluid samples of AD mice. This screening platform provides a stable and homogeneous environment for observing Aβ interactions with dimer‐specific molecules. 相似文献
103.
Considering the potential bioactivities of natural product and natural product-like compounds with highly complex and diverse structures, the screening of collections and small-molecule libraries for high-throughput screening (HTS) and high-content screening (HCS) has emerged as a powerful tool in the development of novel therapeutic agents. Herein, we review the recent advances in divergent synthetic approaches such as complexity-to-diversity (Ctd) and biomimetic strategies for the generation of structurally complex and diverse indole-based natural product and natural product-like small-molecule libraries. 相似文献
104.
Drug-likeness prediction is important for the virtual screening of drug candidates. It is challenging because the drug-likeness is presumably associated with the whole set of necessary properties to pass through clinical trials, and thus no definite data for regression is available. Recently, binary classification models based on graph neural networks have been proposed but with strong dependency of their performances on the choice of the negative set for training. Here we propose a novel unsupervised learning model that requires only known drugs for training. We adopted a language model based on a recurrent neural network for unsupervised learning. It showed relatively consistent performance across different datasets, unlike such classification models. In addition, the unsupervised learning model provides drug-likeness scores that well separate distributions with increasing mean values in the order of datasets composed of molecules at a later step in a drug development process, whereas the classification model predicted a polarized distribution with two extreme values for all datasets presumably due to the overconfident prediction for unseen data. Thus, this new concept offers a pragmatic tool for drug-likeness scoring and further can be applied to other biochemical applications.A new quantification method of drug-likeness based on unsupervised learning. The method only uses drug molecules as training set without any non-drug-like molecules. 相似文献
105.
Differential scanning calorimetry (DSC) and scanning electron microscopy (SEM) studies have been performed to reveal a crosslinked epoxy nature of the spherical particles formed in cured epoxy/DDS/PMMA blends. An interesting phase inversion phenomenon was observed in cured DGEBA/DDS/PMMA blends, which occurred at a relatively low thermoplastic composition of 20 phr PMMA in blends. A unique method of preparing crosslinked epoxy spheres of controlled sizes based on cure-induced phase inversion is described in this report. Several factors have been found to affect the geometry of the formed epoxy spheres. The volume fraction of PMMA in the blends strongly dominates the influence. With the increase of PMMA volume fraction in the blends, the spheres not only become smaller in sizes, but also more regular in the spherical geometry due to less impingement. The crosslinking density (DDS phr in the blends) has been found to influence the average sizes of the spheres. The cure temperature has relatively limited effects only when the PMMA loadings in the blends are relatively small. Various potential applications for the epoxy microspheres may be investigated in future studies. © 1996 John Wiley & Sons, Inc. 相似文献
106.
Dae Woo Ihm Soo Young Park Cheol Gyu Chang Yoon Sung Kim Hwan Kwang Lee 《Journal of polymer science. Part A, Polymer chemistry》1996,34(14):2841-2850
The effects of transesterification on the miscibility of poly(ethylene terephthalate)/poly(ethylene 2,6-naphthalate) were studied. Blends were obtained by solution precipitation at room temperature to avoid transesterification during blend preparation. The physical blends and transesterified products were analyzed by wide-angle x-ray scattering, differential scanning calorimetry, and nuclear magnetic resonance spectroscopy. It was found that the physical blends are immiscible and when the extent of transesterification reaches 50% of the completely randomized state, independent of blend composition, the blends are not crystallizable and show a single glass transition temperature between those of starting polymers. The interchange reactions were significantly influenced by annealing temperature and time but negligibly by blend composition. © 1996 John Wiley & Sons, Inc. 相似文献
107.
A rare case of thermodynamic miscibility has been demonstrated in the amorphous state (quenched glass as well as molten state) of a ternary blend system formed by poly(ether imide) and semicrystalline poly(ethylene terephthalate) and poly-(butylene terephthalate). A single glass transition temperature (Tg) in the ternary blends was observed using differential scanning calorimetry and dynamic mechanical analysis. 相似文献
108.
Dr. Shailima Rampogu Gihwan Lee Apoorva M. Kulkarni Donghwan Kim Sanghwa Yoon Prof. Myeong Ok Kim Prof. Keun Woo Lee 《ChemistryOpen》2021,10(5):593-599
Scientists all over the world are facing a challenging task of finding effective therapeutics for the coronavirus disease (COVID-19). One of the fastest ways of finding putative drug candidates is the use of computational drug discovery approaches. The purpose of the current study is to retrieve natural compounds that have obeyed to drug-like properties as potential inhibitors. Computational molecular modelling techniques were employed to discover compounds with potential SARS-CoV-2 inhibition properties. Accordingly, the InterBioScreen (IBS) database was obtained and was prepared by minimizing the compounds. To the resultant compounds, the absorption, distribution, metabolism, excretion and toxicity (ADMET) and Lipinski's Rule of Five was applied to yield drug-like compounds. The obtained compounds were subjected to molecular dynamics simulation studies to evaluate their stabilities. In the current article, we have employed the docking based virtual screening method using InterBioScreen (IBS) natural compound database yielding two compounds has potential hits. These compounds have demonstrated higher binding affinity scores than the reference compound together with good pharmacokinetic properties. Additionally, the identified hits have displayed stable interaction results inferred by molecular dynamics simulation results. Taken together, we advocate the use of two natural compounds, STOCK1N-71493 and STOCK1N-45683 as SARS-CoV-2 treatment regime. 相似文献
109.
A novel biosensor harnessing a peptide layer which has specific affinity to lead ion proved to be highly effective for electrochemical analysis of lead ions. The peptide modified electrode was used for the electrochemical analysis of various trace metal ions by square wave voltammetry. Compared to the other ions investigated, the peptide modified electrode was found to be highly selective to Pb2+ in the range of 50–700 nM. Furthermore, the biosensor exhibited a high reusability and good spike recovery in the tap water containing various concentration of Pb2+. 相似文献
110.
Jae Hyung Park Yong Woo Cho Yoen Ju Son Kwangmeyung Kim Hesson Chung Seo Young Jeong Kuiwon Choi Chong Rae Park Rang-Woon Park In-San Kim Ick Chan Kwon 《Colloid and polymer science》2006,284(7):763-770
An anthracycline drug, adriamycin, was chemically conjugated onto the backbone of glycol chitosan via an acid-labile cis-aconityl linkage. The physicochemical characteristics of the glycol chitosan–adriamycin (GC–ADR) conjugates were investigated by dynamic light scattering, atomic force microscopy, and fluorescence spectroscopy. The GC–ADR conjugates were capable of forming nano-sized self-aggregates in an aqueous medium, when the adriamycin content in the conjugate was in the range of 2.0–5.0 wt.%. The self-aggregates were spherical in shape, and had mean diameters of 238–304 nm, depending on the adriamycin content. The critical aggregation concentrations of the conjugates, estimated by the fluorescence quenching method, were as low as 1.0–2.5×10−2 mg/ml. The size of self-aggregates was not affected by the polymer concentration in the range from 50 to 2,000 μg/ml, and was maintained up to 8 days in phosphate-buffered saline (pH 7.4), indicating high colloidal stability. The release of adriamycin from self-aggregates was significantly dependent on the pH of the medium due to the cis-aconityl linkage; e.g., the amount of adriamycin released for 4 days was 7.3±0.3% at pH 7, whereas it was 29.3±1.9% at pH 4. The cell viability results demonstrated that free adriamycin shows more potent cytotoxicity than the conjugates, primarily attributed to the sustained release of adriamycin from self-aggregates. In conclusion, the self-aggregates, formed by GC–ADR conjugates, might be useful for the site-specific delivery of adriamycin in a sustained manner. 相似文献