How does huperzine A enter and leave the binding gorge of acetylcholinesterase? Steered molecular dynamics simulations

The entering and leaving processes of Huperzine A (HupA) binding with the long active-site gorge of Torpedo californica acetylcholinesterase (TcAChE) have been investigated by using steered molecular dynamics simulations. The analysis of the force required along the pathway shows that it is easier for HupA to bind to the active site of AChE than to disassociate from it, which for the first time interprets at the atomic level the previous experimental result that unbinding process of HupA is much slower than its binding process to AChE. The direct hydrogen bonds, water bridges, and hydrophobic interactions were analyzed during two steered molecular dynamics (SMD) simulations. Break of the direct hydrogen bond needs a great pulling force. The steric hindrance of bottleneck might be the most important factor to produce the maximal rupture force for HupA to leave the binding site but it has a little effect on the binding process of HupA with AChE. Residue Asp72 forms a lot of water bridges with HupA leaving and entering the AChE binding gorge, acting as a clamp to take out HupA from or put HupA into the active site. The flip of the peptide bond between Gly117 and Gly118 has been detected during both the conventional MD and SMD simulations. The simulation results indicate that this flip phenomenon could be an intrinsic property of AChE and the Gly117-Gly118 peptide bond in both HupA bound and unbound AChE structures tends to adopt the native enzyme structure. At last, in a vacuum the rupture force is increased up to 1500 pN while in water solution the greatest rupture force is about 800 pN, which means water molecules in the binding gorge act as lubricant to facilitate HupA entering or leaving the binding gorge.     

Dynamic Lie algebraic formulation of second‐order optical nonlinearity for substituted benzenes

A dynamic Lie algebraic (DLA) formulation is applied to the study of nonlinear optical properties of the substituted benzenes. We have described the generation of the dynamic Lie algebra for the model Hamiltonian used in the present study. In terms of these elements of the dynamic algebra we express the evolution operator as a function of the group parameters, which can be determined by means of solving a system of coupled nonlinear differential equations. Thus, in terms of the density matrix operator formalism in statistical mechanics we obtain the statistical averages of the electric polarization and then derive readily an expression for the hyperpolarizability of the paradisubstituted benzenes. Comparisons with experimental observations and other quantum calculations of the hyperpolarizabilities for the paradisubstituted benzenes are made qualitatively and quantitatively. These results imply that the DLA method appears useful in describing the nonlinear optical phenomena in the substituted benzene molecules. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 93: 335–343, 2003     

优化几何构型对高级别从头算能量的影响

对《ＣＲＣ物理与化学手册》（第７７版）中第三周期以前的无机双原子分子,当其理论优化构型的相对误差大于２％时,分别在实验构型和最大偏差的理论构型下,计算了ＱＣＩＳＤ（Ｔ）／６－３１１＋Ｇ（３ｄｆ,２ｐ）能量并作了比较。结果表明,大多数能量的差别在４．２ｋＪ．ｍｏｌ＾－１以内。由此说明,目前一般采用的构型优化理论方法,多数情况下不至于明显影响单点高级别从头算的计算精度。同时还发现,Ｇ２（ＱＣＩ）的高级     

Microstructure and association property of hydrophobically modified polyacrylamide of a new family

A new family of hydrophobically modified polyacrylamides was synthesized via copolymerization of acrylamide (AM) and anionic surface-active monomer of acrylamide-type, sodium 2-acrylamido-tetradecane sulfonate (NaAMC₁₄S), in aqueous solution. In the copolymerization, by varying various factors, such as the feed ratio of NaAMC₁₄S to AM and the amount of added electrolyte NaCl and initiator, we prepared copolymers NaAMC₁₄S/AM with different block structures. The relationship between structures and hydrophobic association properties of copolymer chains was studied by using fluorescence probe and viscosimetry. Effects of the content and length of the hydrophobic blocks and the total molecular weight on hydrophobic association of the copolymers in pure water and in brine solution were examined, respectively. The results show that in pure water, hydrophobic association of the copolymers was enhanced as the content and length of the hydrophobic block increase. On the other hands, for a given content and length of the hydrophobic block, the hydrophobic association of the copolymers was enhanced as the total molecular weight increases. For all the copolymers studied, the apparent viscosity of their solutions in pure water has a limited value, but the apparent viscosities of the copolymer brine solutions are much higher than that of their corresponding water solutions, and show strong positive salinity sensitivity. Similarly, the hydrophobic association of the copolymer in brine solutions was enhanced as the content and length of the hydrophobic block increase.     

Cu-Mg/Al复合氧化物催化碳颗粒物燃烧性能的研究

恒定二价与三价阳离子比为3(nM2+/nM3+=3),采用共沉淀法制备不同Cu含量的系列水滑石前驱物, 800 ℃焙烧4 h形成复合氧化物(CuO质量百分数分别为0％、5％、10％、15％、20％、30％、40％)用作柴油车排放碳颗粒物燃烧的催化剂,并采用XRD、BET、TG-DSC、FT-IR、TPR等表征手段研究了Cu、Mg含量对材料前驱物物化性能的影响及对其衍生复合氧化物催化碳颗粒物燃烧性能的影响．结果表明,Cu、Mg含量对材料的热稳定性、比表面和催化氧化活性有显著的影响. Mg有助于提高催化剂的热稳定性; Cu含量增加,催化剂比表面下降,但比表面不是影响催化剂活性的主要因素. CuO含量为15％时,催化剂具有最好的催化活性和稳定性,碳颗粒物的起燃温度(T10)和半转化温度(T50)分别为336 ℃和409 ℃.在CuO含量≤30％时可以形成结构完整的水滑石前驱物, CuO含量为40％时出现Cu(OH)2杂相; CuO含量< 20％时,经高温焙烧可得到均匀的复合氧化物, CuO含量≥20％时出现CuO偏析． TPR结果表明焙烧温度和复合氧化物的组成决定了材料的可还原性能．     

Molecular Recognition of Bases and Nucleosides by Mono－substituted Mononuclear Complexes of 1,4,7,10－Tetraaza－cyclododecane

The mononuclear macrocyclic polyamine metal complexes 5a-5e have been shown to form stable 1 : 1 complexes with bases and nucleosides. Their binding constants (K) were determined by UV-visible spectrometric titration. The results show that recognition ability of the complexes 5a--5e for uracil, U (Uridine), dT (Thymidine) is higher than that for the other bases or nucleosides (such as Cytidine, Guanosine, Adenosine). The metal ion also plays an important role for the recognition ability of complexes.     

Vacancy ion-exclusion chromatography of aromatic carboxylic acids on a weakly acidic cation-exchange resin

Determination of aromatic carboxylic acids by conventional ion-exclusion chromatography is relatively difficult and methods generally rely on hydrophobic interaction between the solute and the resin. To overcome the difficulties in determining aromatic carboxylic acids a new approach is presented, termed vacancy ion-exclusion chromatography, which is based on use of the sample as mobile phase and an injection of aqueous 10% methanol onto a weakly acidic cation-exchange column (TSKgel OApak-A). Highly sensitive conductivity detection occurred with sharp and well-shaped peaks, leading to very efficient separations. The effects of sulfuric acid concentration added to the mobile phase, flow-rate, and column temperature on the retention volume of tested aromatic carboxylic acids was investigated. Retention times were found to be affected by the concentration of the analytes in the mobile phase and to some extent also by the addition of an organic modifier such as methanol to the injected water sample. Separation of sulfuric acid (SA), naphthalenetetracarboxylic acid (NTCA), phthalic acid (PA) and benzoic acid (BA) was satisfactory using this new approach. Detection limits were 0.66, 0.67, 0.42 and 0.86 microM and detector responses were linear in the range 1-100, 1-80, 2.5-100 and 10-40 microM, for SA, NTCA, PA and BA, respectively. Precision for retention times was 0.36% and for peak areas was 1.5%.     

水杨基荧光酮—过氧化氢催化动力学光度法测定痕量锇（Ⅳ）

在碱性介质中，痕量锇（Ⅳ）对水杨基荧光酮（ＳＡＦ）与过氧化氢的氧化还原反应有显著的催化作用。本文以此为基础，提出用分光光度催化动力学测定痕量锇（Ⅳ）的新方法。本法未加掩蔽剂时的线性范围是０．０８－０．８０μｇ／Ｌ，加入掩蔽剂后的线性范围是０．０８－０．８０μｇ／Ｌ，检出限为０．０８μｇ／Ｌ。本法用于实际样品中Ｏｓ（Ⅳ）的测定，结果良好，本实验还测定了此催伦反应的活化能和反应级数。     

CTMAB存在下钪多元络合物的研究

本文系统研究了在阳离子表面活性剂存在下钪与溴邻苯三酚红及三乙烯四胺形成多元络合物的条件，测定了络合物的最大吸收波长和摩尔吸光系数，确定了络合物的组成。并初步探讨了反应机理。     

A density functional study on the formation of charge transfer complexes between alkaloids and iodine monochloride

The formation of charge-transfer (CT) complexes between N-methyl-6,7-methylenedioxy-tetrahydro-4-isoquinolone (MMDTIQ, the model molecule of alkaloids) and iodine monochloride has been studied with the density functional B3LYP method. The competition for ICl between n-donor(s) and π-donor in the same molecule has been compared for the first time. The results indicate that the electron-donating ability of various donor sites decreases in the following order: amino nitrogen>carbonyl oxygen>etheric oxygen≈aromatic ring. Complexes with a stoichiometry of 1:1 to 1:5 (MMDTIQ–ICl) might form. Among complexes with a given stoichiometry, the one in which the phenyl ring is involved in the binding is always the least stable. According to these results, in order to ensure an alkaloid iodinated, the amount of ICl should be far beyond that of alkaloids and a low polar solvent should be used, which is quite in agreement with our recent experimental results.