Capturing Transient Endoperoxide in the Singlet Oxygen Oxidation of Guanine

The chemistry of singlet O₂ toward the guanine base of DNA is highly relevant to DNA lesion, mutation, cell death, and pathological conditions. This oxidative damage is initiated by the formation of a transient endoperoxide through the Diels–Alder cycloaddition of singlet O₂ to the guanine imidazole ring. However, no endoperoxide formation was directly detected in native guanine or guanosine, even at ?100 °C. Herein, gas‐phase ion–molecule scattering mass spectrometry was utilized to capture unstable endoperoxides in the collisions of hydrated guanine ions (protonated or deprotonated) with singlet O₂ at ambient temperature. Corroborated by results from potential energy surface exploration, kinetic modeling, and dynamics simulations, various aspects of endoperoxide formation and transformation (including its dependence on guanine ionization and hydration states, as well as on collision energy) were determined. This work has pieced together reaction mechanisms, kinetics, and dynamics data concerning the early stage of singlet O₂ induced guanine oxidation, which is missing from conventional condensed‐phase studies.     

Trinuclear thiocyanate-bridged compounds of the type [ML]2[Mn(NCS)4](ClO4)2 (where M = Cu(II), Ni(II); L = N-dl-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradeca-4,11-diene)

The complexes of general formula [ML]2[Mn(NCS)4](ClO4)2 (where M = Cu(II), Ni(II); L = N-dl-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradeca-4,11-diene) were obtained and the crystal structures of both heteronuclear compounds were determined at 173 K. Complex [CuL]2[Mn(NCS)4](ClO4)2 (1) crystallizes in a monoclinic space group, C2/c, with a = 41.297(9) A, b = 7.571(2) A, c = 16.417(4) A, beta = 96.97(15) degrees, Z = 8, whereas complex [NiL]2[Mn(NCS)4](ClO4)2.H2O (2) crystallizes in a monoclinic space group, P2/c, with a = 21.018(5) A, b = 7.627(2) A, c = 16.295(4) A, beta = 104.47(1) degrees, Z = 4. The magnetic behaviour of (1) and (2) has been investigated over the temperature range 1.8-300 K. Complex (1) displays ferromagnetic coupling inside the trinuclear core of CuMnCu and compound (2) behaves like a mononuclear Mn(II) system. The magnetic properties of the second compound (2) with a similar trinuclear structure shows that Ni(II) ions have a diamagnetic character and a rather weak zero-field splitting at the central Mn(II) ion occurs. Finally, the magnitudes of the Cu(II)-M(II) interactions with M = Ni and Mn have been compared and qualitatively justified.     

Prediction of 31P nuclear magnetic resonance chemical shifts for phosphines

Quantitative relationships of the (31)P NMR chemical shifts of the phosphorus atoms in 291 phosphines with the atomic ionicity index (INI) and stereoscopic effect parameters (epsilon(alpha), epsilon(beta), epsilon(gamma)) were primarily investigated in this paper for modeling some fundamental quantitative structure-spectroscopy relationships (QSSR). The results indicated that the (31)P NMR chemical shifts of phosphines can be described as the quantitative equation by multiple linear regression (MLR): delta(p)(ppm)= -174.0197-2.6724INI+40.4755epsilon(alpha)+15.1141epsilon(beta)-3.1858epsilon(gamma), correlation coefficient R=0.9479, root mean square error (rms)=13.9, and cross-validated predictive correlation coefficient was found by using the leave-one-out procedure to be Q(2)=0.8919. Furthermore, through way of random sampling, the estimative stability and the predictive power of the proposed MLR model were examined by constructing data set randomly into both the internal training set and external test set of 261 and 30 compounds, respectively, and then the chemical shifts were estimated and predicted with the training correlation coefficient R=0.9467 and rms=13.4 and the external predicting correlation coefficient Q(ext)=0.9598 and rms=10.8. A partial least square model was developed that produced R=0.9466, Q=0.9407 and Q(ext)=0.9599, respectively. Those good results provided a new, simple, accurate and efficient methodology for calculating (31)P NMR chemical shifts of phosphines.     

1,2-sulfanyl group migration as a driving force: new approach to pyrroles by reaction of allenic aldehydes with amines

[reaction: see text] Acid-promoted reaction of sulfanyl group substituted allenic aldehyde with amine affords pyrrole derivatives in high yields. The neighboring group participation of the sulfanyl group is the driving force in this transformation.     

Analysis of FT-IR spectra of dicyclopentadienyl (bis-substituted cyclopentadienyl) dithiocyano of titanium, zirconium and hafnium

The FT-IR spectra of 18 (R-Cp)2M(NCS)2 were measured. The M-Cp, M-NCS (M=Ti, Zr, Hf) and other vibration modes were reasonably assigned. All complexes of (R-Cp)2M(NCS)2 determined in this paper are bonded by N-M, and the absorption of upsilon(s)(M-Cp)(A1) (M=Ti, Zr and Hf) vibration all appear in 365 cm(-1) or so, while upsilon(as)(M-Cp)(B) appear successively around 420, 350 and 320 cm(-1) in order of Ti, Zr and Hf. The influence of the center metal atoms and the substituents on cyclopentadienyl upon the spectra was discussed. It is mainly in far infrared region that center metal atoms influence upon the infrared spectra. The influence of the substituents to cyclopentadienyling upon its vibration is not significant. Only between 1500 and 1480 cm(-1) did a new absorbing peak appear due to the introduction of substituents to activate upsilon(CC) vibration.     

PVC membrane electrode based on triheptyl dodecyl ammonium iodide for the selective determination of molybdate(VI)

Novel polyvinyl chloride (PVC) membrane electrodes based on triheptyl dodecyl ammonium iodide have been developed. In the presence of 12.5 mM H₂O₂, these electrodes are capable of determining molybdate(VI) ion. The electrodes exhibit near-Nernstian responses over a wide concentration range (2.0 × 10⁻⁶ to 5.0 × 10⁻³ M). The proposed electrodes demonstrate satisfying selectivity for molybdate(VI) ion in the presence of a wide variety of anions other than iodide, and can be used in the pH range 5.0-7.0. Moreover, the electrodes show an average response time of 2-3 min and can be used over a period of 2 months without any significant deviation being observed. In the light of our results, the response mechanism of the electrode is discussed and HMoO₂(O₂)₂⁻ is suggested as the response ion. The proposed electrode has been used to measure molybdenum in ore samples, and the results were in agreement with those obtained by means of ICP analysis.     

Generic applications of 13C‐detected NMR diffusion to formulated systems with suppression of thermal convection induced by proton decoupling

Fast and effective structural/compositional analysis on formulated systems represents one of the major challenges encountered in analytical science. ¹³C‐detected diffusion represents a promising tool to tackle the aforementioned challenges, particularly in industry. Toward exploring the generic applications of ¹³C‐detected diffusion, thermal convection induced by ¹H decoupling has been identified as a key factor that resulted in significantly reduced resolution in the diffusion dimension. Optimization of experimental parameters and utilization of double‐stimulated echo‐based pulse sequence both can effectively suppress the thermal convection caused by the ¹H decoupling, the success of which allows robust and generic applications of ¹³C‐detected diffusion to systems from mixtures of small molecules, polymer blends, and copolymers to actual complex formulated systems. The method is particularly powerful in differentiating small molecules from polymers, polymer blends from copolymers, and end‐group analysis. Copyright © 2016 John Wiley & Sons, Ltd.     

Low‐Temperature Synthesis of Thermoresponsive Diblock Copolymer Nano‐Objects via Aqueous Photoinitiated Polymerization‐Induced Self‐Assembly (Photo‐PISA) using Thermoresponsive Macro‐RAFT Agents

Photoinitiated reversible addition‐fragmentation chain transfer (RAFT) dispersion polymerization of 2‐hydroxypropyl methacrylate is conducted in water at low temperature using thermoresponsive copolymers of 2‐(2‐methoxyethoxy) ethyl methacrylate and oligo(ethylene glycol) methacrylate (M_n = 475 g mol⁻¹) as the macro‐RAFT agent. Kinetic studies confirm that quantitative monomer conversion is achieved within 15 min of visible‐light irradiation (405 nm, 0.5 mW cm⁻²), and good control is maintained during the polymerization. The polymerization can be temporally controlled by a simple “ON/OFF” switch of the light source. Finally, thermoresponsive diblock copolymer nano‐objects with a diverse set of complex morphologies (spheres, worms, and vesicles) are prepared using this particular formulation.

     

CGEMA and VGAP: a Colour Graphics Editor for Multiple Alignment using a Variable GAP penalty. Application to the muscarinic acetylcholine receptor

Summary Today, more than 40 protein amino acid (AA) sequences of membrane receptors coupled to guanine nucleotide binding proteins (G-proteins) are available. For those working in the field of medicinal chemistry, these sequences present a new type of information that should be taken into consideration. To make maximal use of sequence data it is essential to be able to compare different protein sequences in a similar way to that used for small molecules. A prerequisite, however, is the availability of a processing environment that enables one to handle sequences in an easy way, both by hand and by computer. In order to meet these ends, the package CGEMA (Colour Graphics Editor for Multiple Alignment) was developed in our laboratory. The programme uses a user-definable colour coding for the different AAs. Sequences can be aligned by hand or by computer, using VGAP, and both approaches can be combined. VGAP is a novel in-house written alignment programme with a variable gap penalty that also handles consecutive alignments using one sequence as a probe. In addition, secondary structure prediction tools are available.From the 20 protein sequences, available for the muscarinic acetylcholine receptor, 13 different sequences were selected, covering the subtypes m1 to m5. By comparing the sequences, two major groups are revealed that correspond to those found by considering the transducing system coupled to the various receptor subtypes. Different parts of the protein sequences are identified as characterizing the subtype and binding the ligands, respectively.