Hydrothermal Synthesis,Crystal Structure Determination,and Magnetic Properties of a New Calcium Iron Iridium Hydrogarnet Ca3(Ir2–xFex)(FeO4)2–x(O4H4)1+x with 0 ≤ x ≤ 1

The new calcium iron iridium hydrogarnet Ca₃(Ir_2–xFe_x)(FeO₄)_2–x(H₄O₄)_1+x (0 ≤ x ≤ 1) was obtained by hydrothermal synthesis under strongly oxidizing alkaline conditions. The compound adopts a garnet‐like crystal structure and crystallizes in the acentric cubic space group I4 3d (no. 220) with a = 12.5396(6) Å determined at T = 100 K for a crystal with a refined composition Ca₃(Ir_1.4Fe_0.6)(FeO₄)_1.4(O₄H₄)_1.6. Iridium and iron statistically occupy the octahedrally coordinated metal position, the two crystallographically independent tetrahedral sites are partially occupied by iron. Hydroxide groups are found to cluster as hydrogarnet defects, i.e. partially substituting oxide anions around the empty tetrahedral metal sites. The presence of hydroxide ions was confirmed by infrared spectroscopy and the hydrogen content was quantified by carrier gas hot extraction; the overall composition was verified by energy dispersive X‐ray spectroscopy. The structure model is supported by ⁵⁷Fe‐Mössbauer spectroscopic data evidencing different Fe sites and a magnetic ordering of the octahedral iron sublattice at room temperature. The thermal decomposition proceeds via three steps of water loss and results in Ca₂Fe₂O₅, Fe₂O₃ and Ir. Mössbauer and magnetization data suggest magnetic order at ambient temperature with complex magnetic interactions.     

Analytical approaches for the determination of PCB metabolites in blood: a review

Polychlorinated biphenyls (PCBs) are among the most ubiquitous pollutants in the environment, and their metabolism leads to the formation of hydroxylated PCBs (OH-PCBs) and methyl sulfone PCBs (MeSO₂-PCBs). These metabolites are generally more hydrophilic than the parent compound, and therefore are more easily eliminated from the body. However, some congeners have been shown to be strongly retained in human blood, binding to transthyretin with an affinity that is, in general, greater than that of the natural ligand thyroxin itself, which could result in toxicological effects, particularly on the thyroid system. Currently available analytical methods require, in general, extensive sample preparation, which includes a series of time-consuming and low-throughput liquid–liquid and back extractions, evaporations, several cleanup steps, and in some cases, derivatization prior to analysis by gas chromatography (GC) or liquid chromatography (LC) coupled with mass spectrometry (MS). Recent developments in the use of LC coupled with tandem MS (MS/MS) have brought some improvements in terms of sample preparation for the determination of PCB metabolites in blood, although there are still possibilities for continued development. The selected literature has evidenced few studies of LC–MS/MS-based methods, a lack of analytical standards, nonassessment of lower-chlorinated OH-PCBs, and scarce attention to MeSO₂-PCBs in blood. This review aims to evaluate critically the currently available analytical methods for determination of OH-PCBs and MeSO₂-PCBs in blood.     

Second-order polarization propagator calculations of indirect nuclear spin-spin coupling tensors in the water molecule

The contribution to indirect nuclear spin-spin coupling tensors provided by the Fermi contact, the spin-dipolar, the Fermi contact/spin-dipolar crossterm, and the paramagnetic spin-orbit interactions are investigated in a zeroth-, first- (the same as the coupled Hartree-Fock method), and second-order polarization propagator approach. Numerical applications to the water molecule show that the second-order results for both the HO and the HH coupling constants are in good agreement with experimental data - especially if vibrational corrections and the diamagnetic spin-orbit contributions are taken into account. We find that the correlation corrections beyond coupled Hartree-Fock are important. We also report how the second-order results are influenced by neglect of some of the most time-consuming steps in the calculation.     

Heteronukleare Komplexverbindungen mit Metall—Metall-Bindungen. IX [1]. Amin-kupfer(I)-carbonylmetallate mit Cobalt,Eisen oder Mangan

Heteronuclear Coordination Compounds with Metal—Metal Bonds. IX. Amine Copper(I) Carbonyl Metalates with Cobalt, Iron, or Manganese Colourless crystals of the carbonyl copper complex [(NH₃)₃(CO)Cu][Co(CO)₄] ( 1 a ) are formed in the reaction of [Cu(NH₃)₄]Cl and Na[Co(CO)₄] (T < ? 8°C, p_CO = 1 bar); above ?5°C and under N₂-atmosphere 1 a converts to [(NH₃)₂CuCo(CO)₄] ( C ), which serves as a starting material for the synthesis of new copper cobaltates: the amines N-amino piperidine, N,N-dimethyl ethylenediamine (dmed) and N-benzyl N,N′-dimethyl ethylenediamine (bn-dmed) replace NH₃ to form [(C₅H₁₀N? NH₂)₃CuCo(CO)₄] ( 1 b ), [(dmed)CuCo(CO)₄] ( 1 c ), [(bn-dmed)CuCo(CO)₄] ( 1 d ) the Cu? Co-bond remaining intact. [(NH₃)₂CuFe(CO)₃NO] ( 2 a ) is isosteric with C ; it is synthesized from [Cu(NH₃)₄]Cl and Na[Fe(CO)₃NO] in aqueous solution; 2 a reacts with N,N,N′,N′-tetramethyl ethylenediamine (tmed) to form [(tmed)(NH₃)CuFe(CO)₃NO] ( 2b ). The [Mn(CO)₅]^? ion reacts with ammine copper ions to form the tetranuclear cluster [{(NH₃)CuMn(CO)₅}₂] ( 3 ). All new compounds have been investigated by X-ray structure analysis.     

Unambiguous detection of astaxanthin and astaxanthin fatty acid esters in krill (Euphausia superba Dana)

HPLC atmospheric pressure chemical ionization (APCI)/MS, GC MS, HPLC diode array detection (DAD), and NMR were used for the identification of astaxanthin and astaxanthin fatty acid esters in krill (Euphausia superba Dana). Matrix solid phase dispersion was applied for the extraction of the carotenoids. This gentle and expeditious extraction technique for solid and viscous samples leads to distinct higher enrichment rates than the conventional liquid-liquid extraction. The chromatographic separation was achieved employing a C30 RP column that allows the separation of shape-constrained geometrical isomers. A methanol/tert-butylmethyl ether/water gradient was applied. (all-E) Astaxanthin and the geometrical isomers were identified by HPLC APCI/MS, by coelution with isomerized authentical standard, by UV spectroscopy (DAD), and three isomers were unambiguously assigned by microcoil NMR spectroscopy. In this method, microcoils are transversally aligned to the magnetic field and have an increased sensitivity compared to the conventional double-saddle Helmholtz coils, thus enabling the measurement on small samples. The carotenol fatty acid esters were saponified enzymatically with Lipase type VII from Candida rugosa. The fatty acids were detected by GC MS after transesterification, but also without previous derivatization by HPLC APCI/MS. C14:0, C16:0, C16:1, C18:1, C20:0, C20:5, and C22:6 were found in astaxanthin monoesters and in astaxanthin diesters. (all-E) Astaxanthin was identified as the main isomer in six fatty acid ester fractions by NMR. Quantitation was carried out by the method of internal standard. (13-cis) Astaxanthin (70 microg/g), 542 microg/g (all-E) astaxanthin, 36 microg/g unidentified astaxanthin isomer, 62 microg/g (9-cis) astaxanthin, and 7842 microg/g astaxanthin fatty acid esters were found.     

Metal ion coordination to azole nucleosides

To evaluate the possibility of introducing azole nucleosides as building blocks for metal-mediated base pairs in artificial oligonucleotides, imidazole nucleoside, 1,2,4-triazole nucleoside and tetrazole nucleoside have been synthesized and characterized. The X-ray crystal structures of p-toluoyl-protected 1,2,4-triazole and tetrazole nucleosides are reported. Contrary to the situation primarily found for deoxyribonucleosides, the sugar moieties adopt C3'-endo conformations. The acidity of the beta nucleosides increases with increasing number of nitrogen ring atoms, giving pKa values of 6.01 +/- 0.05, 1.32+/-0.05 and <-3, respectively. This decrease in basicity results in a decreasing ability to form 2:1 complexes with linearly coordinating metal ions such as Ag+ and Hg2+. In all cases, the Ag+ complexes are of higher stability than the corresponding Hg2+ complexes. Whereas imidazole nucleoside forms highly stable 2:1 complexes with both metal ions (estimated log beta2 values of >10), only Ag+ is able to reach this coordination pattern in the case of triazole nucleoside (log beta2 = 4.3 +/- 0.1). Tetrazole nucleoside does not form 2:1 complexes at all under the experimental conditions used. These data suggest that imidazole nucleoside, and to a lesser extent 1,2,4-triazole nucleoside, are likely candidates for successful incorporation as ligands in oligonucleotides based on metal-mediated base pairs. DFT calculations further corroborate this idea, providing model complexes for such base pairs with glycosidic bond distances (10.8-11.0 Angstroms) resembling those in idealized B-DNA (10.85 Angstroms).     

Determination of inorganic arsenic in white fish using microwave-assisted alkaline alcoholic sample dissolution and HPLC-ICP-MS

An analytical method for the determination of inorganic arsenic in fish samples using HPLC-ICP-MS has been developed. The fresh homogenised sample was subjected to microwave-assisted dissolution by sodium hydroxide in ethanol, which dissolved the sample and quantitatively oxidised arsenite (As(III)) to arsenate (As(V)). This allowed for the determination of inorganic arsenic as a single species, i.e. As(V), by anion-exchange HPLC-ICP-MS. The completeness of the oxidation was verified by recovery of As(V) which was added to the samples as As(III) prior to the dissolution procedure. The full recovery of As(V) at 104±7% (n=5) indicated good analytical accuracy. The uncertified inorganic arsenic content in the certified reference material TORT-2 was 0.186±0.014 ng g^–1 (n=6). The method was employed for the determination of total arsenic and inorganic arsenic in 60 fish samples including salmon from fresh and saline waters and in plaice. The majority of the results for inorganic arsenic were lower than the LOD of 3 ng g^–1, which corresponded to less than one per thousand of the total arsenic content in the fish samples. For mackerel, however, the recovery of As(III) was incomplete and the method was not suited for this fat-rich fish.     

NMR solution structure of dsDNA containing a bicyclic D-arabino-configured nucleotide fixed in an O4'-endo sugar conformation

[3.2.0]bcANA is a D-arabino-configured bicyclic nucleotide with a 2'-O,3'-C-methylene bridge. We here present the high-resolution NMR structure of a [3.2.0]bcANA modified dsDNA nonamer with one modified nucleotide incorporated. NOE restraints were obtained by analysis of NOESY cross peak intensities using a full relaxation matrix approach, and subsequently these restraints were incorporated into a simulated annealing scheme for the structure determination. In addition, the furanose ring puckers of the deoxyribose moieties were determined by analysis of COSY cross peaks. The modified duplex adopts a B-like geometry with Watson-Crick base pairing in all base pairs and all glycosidic angles in the anti range. The stacking arrangement of the nucleobases appears to be unperturbed relative to the normal B-like arrangement. The 2'-O,3'-C-methylene bridge of the modified nucleotide is located at the brim of the major groove where it fits well into the B-type duplex framework. The sugar pucker of the [3.2.0]bcANA nucleotide is O4'-endo and this sugar conformation causes a change in the delta backbone angle relative to the C2'-endo deoxyribose sugar pucker. This change is absorbed locally by slight changes in the epsilon and zeta angles of the modified nucleotide. Overall, the [3.2.0]bcANA modifications fits very well into a B-like duplex framework and only small and local perturbations are observed relative to the unmodified dsDNA of identical base sequence.     

Surface microscopic structure and electrochemical rectification of a branched alkanethiol self-assembled monolayer

The tert-butanethiol self-assembled monolayers (SAMs) on Au(111) surfaces were prepared from various solvents and investigated by a combination of scanning tunneling microscopy (STM) and electrochemistry in aqueous environments. High-resolution STM images reveal a (radical(7) x radical(7))R19 degrees surface lattice structure, in contrast with the conventional lattice (radical(3) x radical(3))R30 degrees structure for straight-chain alkanethiol SAMs. Interestingly, such a branched monolayer shows electrochemical rectification toward redox probes. We suggest that electrochemical rectification could be a general characteristic of short-chain branched alkanthiol SAMs, and originate in localized electronic effects.