Total chemical synthesis of human thyroid-stimulating hormone (hTSH) β-subunit: Application of arginine-tagged acetamidomethyl (AcmR) protecting groups

The β-subunit of human thyroid stimulating hormone (hTSH) has been synthesized as a single glycoform bearing a chitobiose disaccharide at the native glycosylation site. Key to the successful completion of this synthesis was the introduction of an arginine-tagged acetamidomethyl group, which served to greatly facilitate handling of a glycopeptide fragment with poor aqueous solubility. This general solution to the challenge of working with intractable peptides is expected to find wide use in protein synthesis.     

Synthesis of 8-substituted-6-phenyl-6,7,8,9-tetrahydro-3H-pyrazolo[4,3-f]isoquinolines using Pictet-Spengler and Bischler-Napieralski cyclisation methods

In the following communication we report routes for the synthesis of a set of 8-substituted-6-phenyl-6,7,8,9-tetrahydro-3H-pyrazolo[4,3-f]isoquinolines. Pictet-Spengler and Bischler-Napieralski methodologies were employed on the relevant indazole precursors and the merits of the two cyclisation reactions for preparing these structures were assessed.     

Modeling Kinetic Interphase Mass Transfer for Two-Phase Flow in Porous Media Including Fluid–Fluid Interfacial Area

Interphase mass transfer in porous media takes place across fluid–fluid interfaces. At the field scale, this is almost always a kinetic process and its rate is highly dependent on the amount of fluid–fluid interfacial area. Having no means to determine the interfacial area, modelers usually either neglect kinetics of mass transfer and assume local equilibrium between phases or they estimate interfacial area using lumped parameter approaches (in DNAPL pool dissolution) or a dual domain approach (for air sparging). However, none of these approaches include a physical determination of interfacial area or accounts for its role for interphase mass transfer. In this work, we propose a new formulation of two-phase flow with interphase mass transfer, which is based on thermodynamic principles. This approach comprises a mass balance for each component in each phase and a mass balance for specific interfacial area. The system is closed by a relationship among capillary pressure, interfacial area, and saturation. We compare our approach to an equilibrium model by showing simulation results for an air–water system. We show that the new approach is capable of modeling kinetic interphase mass exchange for a two-phase system and that mass transfer correlates with the specific interfacial area. By non-dimensionalization of the equations and variation of Peclet and Damköhler number, we make statements about when kinetic interphase mass transfer has to be taken into account by using the new physically based kinetic approach and when the equilibrium model is a reasonable simplification.     

A multiplexed post-translational modification monitoring approach on a matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometer

Post-translational modifications (PTMs) of proteins are essential for proper function, as they regulate many aspects of a protein's activity and interaction with substrates. When analyzing modified peptides derived from such proteins by mass spectrometry, these modifications can dissociate, producing either a marker ion or neutral loss characteristic of the modification, which have conventionally been monitored with a precursor ion scan or neutral loss scan, respectively. Although powerful, both precursor ion scans and neutral loss scans can only screen for one particular modification at a time. This has led to the development of multiple neutral loss monitoring (MNM) for neutral losses and multiple precursor ion monitoring (MPM) for marker ions on electrospray instruments. Here, we report their implementation on a matrix-assisted laser desorption/ionization (MALDI) instrument as well as the inception of a novel scan strategy termed targeted multiple precursor ion monitoring (tMPM). This latter scan strategy has been developed on a MALDI tandem time-of-flight (TOF/TOF) mass spectrometer for the identification of multiple PTMs via their associated marker ions by manipulating certain components of the instrument, notably the timed ion selector and the delayed extraction source 2. Targeted MPM combined with a second approach, multiple neutral loss monitoring (MNM), is shown to be a successful approach in the identification of PTMs, identifying multiple modified peptides in a complex sample matrix.     

Synthesis of, and structural assignments to the stereoisomers of bis (2,2')- and tris (2,2',2")-tetrahydrofurans: conformational features and ionic binding capacities of these gateway polycyclic networks

Construction of the polytetrahydrofuranyl building blocks 6-10 from the common bissiloxyacetone precursor 11 is detailed. The approach is concise and, for the bis-(THF) pair, capitalizes on the full retention of configuration observed during the rhodium-promoted decarbonylation of aldehydes 18 and 19. The capability of the title compounds to associate with alkali metal ions in solution and the gas phase has demonstrated a preference for Li+ over Na+ and K+ in all cases, with 6 and 7 exhibiting somewhat higher binding selectivities than 8-10. The relative energy orderings of attainable conformations with the bis-THF and tris-THF series were explored computationally. The various envelope arrangements present in the individual THF units are shown to play a significant role alongside prevailing gauche interactions. The "gauche effect" is shown computationally not to be an accurate predictor of the lowest energy conformer.     

Polymer-induced synthesis of stable gold and silver nanoparticles and subsequent ligand exchange in water

A simple, inexpensive, single-step synthesis of gold and silver nanoparticles using poly(allylamine) (PAAm) as a reducing and stabilizing agent is reported. The synthetic process was carried out in aqueous solution, making the method versatile and environmentally friendly. The synthesized polymer-stabilized nanoparticles are stable in water without particle aggregation at room temperature for at least a month. We demonstrate successful ligand exchange on the polymer-stabilized gold nanoparticles (AuNPs) with a variety of omega-functionalized acid-, alcohol-, amine-, and biotin-terminated alkylthiols. The methodologies, including ligand exchange, also are applicable for the generation of finely dispersed silver nanoparticles. The synthesized gold and silver nanoparticles are characterized by UV-visible absorption spectroscopy and transmission electron microscopy (TEM). The different ligand-stabilized AuNPs are also analyzed by Fourier transform infrared (FTIR) spectroscopy.     

Amphiphilic Polyoxometalates for the Controlled Synthesis of Hybrid Polystyrene Particles with Surface Reactivity

Amphiphilic organo‐polyoxometalates (POMs) used in the radical emulsion polymerization of styrene allowed the preparation in aqueous medium of stable 50–100 nm polystyrene–POM composite latexes. Thanks to the presence of a trithiocarbonate group in the POM amphiphile, POMs could be covalently linked to the polymer particle surface. The chemical and catalytic integrity of the POMs was confirmed, and the POM‐mediated surface photoactivity of the latexes was demonstrated by the spatially controlled nucleation of silver nanoparticles at the periphery of the composites.     

Towards the Discrimination of Carboxylates by Hydrogen‐Bond Donor Anion Receptors

The binding constants (log K_ass) of small synthetic receptor molecules based on indolocarbazole, carbazole, indole, urea and some others, as well as their combinations were measured for small carboxylate anions of different basicity, hydrophilicity and steric demands, that is, trimethylacetate, acetate, benzoate and lactate, in 0.5 % H₂O/[D₆]DMSO by using the relative NMR‐based measurement method. As a result, four separate binding affinity scales (ladders) including thirty‐eight receptors were obtained with the scales anchored to indolocarbazole. The results indicate that the binding strength is largely, but not fully, determined by the strength of the primary hydrogen‐bonding interaction. The latter in turn is largely determined by the basicity of the anion. The higher is the basicity of the anion the stronger in general is the binding, leading to the approximate order of increasing binding strength, lactate<benzoate<acetate≤trimethylacetate, which holds with all investigated receptors. Nevertheless, there are a number of occasions when the binding order changes with changing of the carboxylate anion, sometimes quite substantially. Principal component analysis (PCA) reveals that this is primarily connected to preferential binding of trimethylacetate, supposedly caused by an additional hydrophobic/solvophobic interaction. These findings enable making better predictions, which receptor framework or cavity is best suited for carboxylate anions in receptor design.