Carbocyclic analogs of nucleosides. Part 2.. Synthesis of 2′,3′-dideoxy-5′-homonucleoside analogs

A set of derivatives of cyclopentaneacetic acid cis-substituted at position 3 by nucleoside bases (both purines and pyrimidines) were prepared and characterized (see 11, 14 , and 23a, b; Schemes 2–4). These molecules are carbocyclic analogs of 2′,3′-dideoxy-5′-homonucleosides. In this synthesis, the skeleton was constructed from norbornanone and a novel method based on Mitsunobu chemistry used for the introduction of nucleoside-base substituents. The scope of this method was further explored via the preparation of a cyclobutyl analog of dideoxyguanosine (see 17 , Scheme 3).     

Templating Ag on DNA/polymer hybrid nanowires: Control of the metal growth morphology using functional monomers

Ag nanowires and nanoparticles have been formed on hybrid λ-DNA/conducting polymer templates. The strong, but non-covalent, interaction of the conducting polymer with the double helix allowed us to incorporate chemical functionalities (alkynyl) into the DNA/conducting polymer strands by synthesis of functional monomers. Oxidative polymerisation of alkynyl-thienylpyrrole in the presence of λ-DNA produced conductive nanowires bearing alkyne groups; we show, using a combination of AFM, cAFM and EFM phase measurements that the alkyne functionality strong influences the subsequent templating reaction of Tollens’ reagent to produce uniform conductive nanowires comprised of many connected Ag clusters.     

Evidence for Dual Pathway in Through‐Space Singlet Energy Transfers in Flexible Cofacial Bisporphyrin Dyads

Flexible “pacman” scaffolds built upon a calix[4]arene platform bearing a [18]crown‐6 ether and either two OH functions or two OPr groups at the lower rim have been used to generate donor–acceptor (D–A) dyads incorporating a zinc–porphyrin donor and a free‐base porphyrin acceptor. Through‐space singlet energy transfer (SET) in the D–A dyads was studied by time‐resolved fluorescence spectroscopy. Although the effects of conformational changes are well documented when the chromophores switch from a non‐cofacial to a cofacial arrangement, little is known about flexible pacman scaffolds in which the changes are limited to the distance between the chromophores. The known SET rates for reported, geometrically well‐defined, rigid pacman D–A dyads were used as calibration to estimate the D–A distances in the flexible pacman dyads. Due to the flexibility of the calix[4]arene spacer, the D–A dyads adopt a “closed” or “open” geometry that is tuned by intramolecular hydrogen bonds (O? H???[18]crown‐6 ether) and by solvent interactions. Changes in the SET rates between the open and closed geometries were surprisingly less dramatic than expected, and are explained by a dual SET pathway that is specific to the calix[4]arene platform. Time‐resolved fluorescence studies support the hypothesis that, for the “open” conformer, the preferred through space SET pathway (i.e., at the shortest distance) is located within the calix[4]arene cavity through the cofacial phenyl groups. For the “closed” conformer, the preferred through space SET route is located between the zinc and free‐base porphyrins.     

A macrocyclic β-iodoallenolate intermediate is key: synthesis of the ABD core of phomactin A

An enantioselective strategy for the synthesis of phomactin natural products is described. The Lewis acid triggered cyclization of a β-iodoallenolate embedded in a 12-membered macrocycle was used to obtain a highly functionalized bicyclo[9.3.1]pentadecane in good yield and high diastereoselectivity. This iodoenone contains the substituents of the AD ring system of the phomactin family of natural products, appropriate for further functionalization. Synthesis of the oxadecalin core of phomactin A from the AD iodoenone intermediate was achieved. In this unusual strategy, rings A and B are both fashioned within a macrocyclic precursor.     

Determination of senkirkine and senecionine in Tussilago farfara using microwave-assisted extraction and pressurized hot water extraction with liquid chromatography tandem mass spectrometry

Tussilago farfara (Kuan Donghua) is an important Chinese herbal medicine which has been shown to contain many bioactive compounds and widely used to relieve cough and resolve phlegm. However, besides therapeutic bioactive compounds, this herb has been found to contain toxic pyrrolizidine alkaloids (PAs), mainly senkirkine and traces of senecionine. In this report, conditions for microwave-assisted extraction (MAE) and pressurized hot water extraction (PHWE) were optimized for the extraction of the PAs. The results were compared against heating under reflux. It was found that the binary mixture of MeOH:H₂O (1:1) acidified using HCl to pH 2-3 was the optimal solvent for the extraction of the PAs in the plant materials. Liquid chromatography (LC) with ultra-violet (UV) detection and electrospray ionization mass spectrometry (ESI-MS) in the positive mode was used for the determination and quantitation of senkirkine and senecionine in the botanical extract. The proposed extraction methods with LC/MS allow for the rapid detection of the major and the minor alkaloids in T. farfara in the presence of co-eluting peaks. With LC/MS, the quantitative analysis of PAs in the extract was done using internal standard calibration and the precision was found to vary from 0.6% to 5.4% on different days. The limits of detection (LODs) and limits of quantitation (LOQs) for MAE and PHWE were found to vary from 0.26 μg/g to 1.04 μg/g and 1.32 μg/g to 5.29 μg/g, respectively. The method precision of MAE and PHWE were found to vary from 3.7% to 10.4% on different days. The results showed that major and minor alkaloids extracted using MAE and PHWE were comparable to that by heating under reflux. Our data also showed that significant ion suppression was not observed in the analysis of senkirkine and senecionine in the botanical extracts with co-eluting peaks.     

Capillary size exclusion chromatography with picogram sensitivity for analysis of monoclonal antibodies purified from harvested cell culture fluid

Size exclusion chromatography (SEC) is widely used in the characterization and quality control of therapeutic proteins to detect aggregates. Aggregation is a carefully monitored quality attribute from the earliest stages of clinical development owing to the possibility of eliciting an immunogenic response in the patient. During early stage molecule assessment for cell culture production, small-scale screening experiments are performed to permit rapid turn-around of results so as to not delay timelines. We report the development of a capillary SEC methodology for preliminary molecule assessment to support the evaluation of therapeutic candidates at an early stage of development. By making several key modifications to a commercially available liquid chromatography system, we demonstrate a platform process to perform capillary SEC with excellent precision, picogram sensitivity and good ruggedness. The limit of quantitation was determined to be approximately 15 pg; picogram sensitivity for SEC analysis of monoclonal antibodies had not been achieved prior to this work. In addition, we have developed a method to capture low levels of antibody (1 μg/mL) from harvested cell culture fluid (HCCF) for capillary SEC analysis. Up to 40% recovery efficiency was achieved using this micro-recovery method on 3 mL HCCF samples. Using early stage cell culture transient transfection samples, which typically have much lower titers than stable cell line samples, we demonstrate a consistent method for analyzing aggregates in low protein concentration HCCF samples for molecule assessment and early stage candidate screening.     

Micro-solid oxide fuel cells: status,challenges, and chances

Abstract  Micro-solid oxide fuel cells (micro-SOFC) are predicted to be of high energy density and are potential power sources for portable electronic devices. A micro-SOFC system consists of a fuel cell comprising a positive electrode-electrolyte-negative electrode (i.e. PEN) element, a gas-processing unit, and a thermal system where processing is based on micro-electro-mechanical-systems fabrication techniques. A possible system approach is presented. The critical properties of the thin film materials used in the PEN membrane are discussed, and the unsolved subtasks related to micro-SOFC membrane development are pointed out. Such a micro-SOFC system approach seems feasible and offers a promising alternative to state-of-the-art batteries in portable electronics. Graphical abstract  Graphical Abstract text      

Influence of variable selection on partial least squares discriminant analysis models for explosive residue classification

Using a series of thirteen organic materials that includes novel high-nitrogen energetic materials, conventional organic military explosives, and benign organic materials, we have demonstrated the importance of variable selection for maximizing residue discrimination with partial least squares discriminant analysis (PLS-DA). We built several PLS-DA models using different variable sets based on laser induced breakdown spectroscopy (LIBS) spectra of the organic residues on an aluminum substrate under an argon atmosphere. The model classification results for each sample are presented and the influence of the variables on these results is discussed. We found that using the whole spectra as the data input for the PLS-DA model gave the best results. However, variables due to the surrounding atmosphere and the substrate contribute to discrimination when the whole spectra are used, indicating this may not be the most robust model. Further iterative testing with additional validation data sets is necessary to determine the most robust model.