Phosphazene-based ionic liquids: synthesis, temperature-dependent viscosity, and effect as additives in water lubrication of silicon nitride ceramics

Phosphazene rings with (dimethylamino)ethoxy (1, 2), pyridylmethoxy (3), or (dimethylamino)propoxy (4) chains were synthesized and quaternized at the substitutent nitrogen by treatment with methyl iodide at 35 degrees C over 3-6 h to give polyiodo salts, 5-8. Subsequent metathesis with LiN(SO(2)CF(3))(2) or NaBF(4) gave the respective ionic salts, 9-13. The amide salts, 9-12, were viscous liquids with pour points at 55-100 degrees C, and the tetrafluoroborate salt, 13, was a solid, mp 168 degrees C. The compositions of 2 and 5-13 were confirmed by elemental analysis and spectroscopic methods. Compounds 1, 2, and 4 were viscous liquids (d(25) = 1.67 g cm(-3); eta(25) = 0.76-1.56 mPa s(-1) ) with pour points at approximately 15 degrees C. The solid polyquaternary salts, 5-8, melted at 130-194 degrees C. The ionic liquids, 9-12, had an average density of approximately 1.73 g cm(-3) at 25 degrees C, and viscosities (25 degrees C) ranged between 68.3 and 139.2 mPa s(-1). A plot of the viscosities of 9-12 vs temperature revealed an almost linear correlation between 55 and 120 degrees C. Friction and wear properties of water with 0.25 wt % of 9-12 as boundary lubricant additives were evaluated on Si(3)N(4)/Si(3)N(4) ceramic interfaces. The most significant observation is that they caused a decrease in the running-in period.     

Potent and selective structure-based dibenzofuran inhibitors of transthyretin amyloidogenesis: kinetic stabilization of the native state

Transthyretin (TTR) amyloidogenesis requires rate-limiting tetramer dissociation and partial monomer denaturation to produce a misassembly competent species. This process has been followed by turbidity to identify transthyretin amyloidogenesis inhibitors including dibenzofuran-4,6-dicarboxylic acid (1). An X-ray cocrystal structure of TTR.1(2) reveals that it only utilizes the outer portion of the two thyroxine binding pockets to bind to and inhibit TTR amyloidogenesis. Herein, structure-based design was employed to append aryl substituents at C1 of the dibenzofuran ring to complement the unused inner portion of the thyroxine binding pockets. Twenty-eight amyloidogenesis inhibitors of increased potency and dramatically increased plasma TTR binding selectivity resulted. These function by imposing kinetic stabilization on the native tetrameric structure of TTR, creating a barrier that is insurmountable under physiological conditions. Since kinetic stabilization of the TTR native state by interallelic trans suppression is known to ameliorate disease, there is reason to be optimistic that the dibenzofuran-based inhibitors will do the same. Preventing the onset of amyloidogenesis is the most conservative strategy to intervene clinically, as it remains unclear which of the TTR misassembly intermediates results in toxicity. The exceptional binding selectivity enables these inhibitors to occupy the thyroxine binding site(s) in a complex biological fluid such as blood plasma, required for inhibition of amyloidogenesis in humans. It is now established that the dibenzofuran-based amyloidogenesis inhibitors have high selectivity, affinity, and efficacy and are thus excellent candidates for further pharmacologic evaluation.     

The glass transition time scale and configurational entropy in polymers: an experimental molecular view

We report direct experimental observation of local conformational dynamics in a polymer chain at the calorimetric glass transition temperature Tg. Variable-temperature two-dimensional (2D) solid-state exchange NMR, at natural abundance, reveals segmental dynamics in pure polyisobutylene (PIB) occurring on a time scale of several seconds over the Tg range observed by DSC (203-208 K). To our knowledge, this is the first direct observation of molecular-level conformer interchange (trans-trans/trans-gauche/gauche-gauche) at the caloric glass transition temperature. Our results provide a chronologically accurate and pedagogically advantageous demonstration of molecular processes during a polymer phase transition, relative to traditional bulk mechanical and calorimetric techniques. More importantly, we use a miscible blend to demonstrate a general strategy for quantitative evaluation of configurational entropy changes via combination of temperature-dependent 2D exchange NMR and Adams-Gibbs theory. Our results on the Tg time scale are directly relevant to fundamental understanding of the Tg length scale, i.e., the dimension of cooperatively rearranging regions.     

Synthesis and Hydrogen Bonding Capabilities of Biphenyl-Based Amino Acids Designed To Nucleate beta-Sheet Structure

The syntheses of 3'-(aminoethyl)-2-biphenylpropionic acid (1) and 2-amino-3'-biphenylcarboxylic acid (2) are described. These residues were designed to nucleate beta-sheet structure in aqueous solution when incorporated into small, amphiphilic peptides in place of the backbone of the i + 1 and i + 2 residues of the beta-turn. N-Benzyl-3'-(2-(benzylamido)ethyl)-2-biphenylpropamide (3) and N-benzyl-(2-benzylamido)-3'-biphenylamide (4) were synthesized and studied as model compounds to investigate the hydrogen-bonding capabilities of residues 1 and 2, respectively. The X-ray crystal structure of 3 indicates that a 13-membered intramolecular hydrogen-bonded ring is formed, while the remaining amide proton and carbonyl are involved in intermolecular hydrogen bonding. Infrared and variable-temperature NMR experiments indicate that, in solution (CH(2)Cl(2)), 3 exists as an equilibrium mixture of the 13- and the 15-membered intramolecularly hydrogen-bonded conformers with the 15-membered ring conformer being favored. Amide 4 was shown to exist in solution (CH(2)Cl(2)) as an equilibrium mixture of the 11-membered intramolecular hydrogen-bonded ring and a nonbonded conformation. No contribution from the 9-membered hydrogen-bonded ring conformation was observed. The X-ray crystal structure of 4 indicated the absence of intramolecular hydrogen bonding in the solid state.     

Continuous sample deposition from reversed-phase liquid chromatography to tracks on a matrix-assisted laser desorption/ionization precoated target for the analysis of protein digests

Peptide mass fingerprinting by matrix-assisted laser desorption/ionization (MALDI)-mass spectrometry (MS) is one of the standard high-throughput methods for protein identification today. Traditionally this method has been based on spotting peptide mixtures onto MALDI targets. While this method works well for more abundant proteins, low-abundance proteins mixed with high-abundance proteins tend to go undetected due to ion suppression effects, instrumental dynamic range limitations and chemical noise interference. We present an alternative approach where liquid chromatography (LC) effluent is continuously collected as linear tracks on a MALDI target. In this manner the chromatographic separation is spatially preserved on the target, which enables generation of off-line LC-MS and LC-MS/MS data by MALDI. LC-MALDI sample collection provides improved sensitivity and dynamic range, spatial resolution of peptides along the sample track, and permits peptide mass mapping of low-abundance proteins in mixtures containing high-abundance proteins. In this work, standard and ribosomal protein digests are resolved and captured using LC-MALDI sample collection and analyzed by MALDI-TOF-MS.     

Subnanosecond high-pressure iodine photodissociation laser oscillator

A simultaneously Q-switched and acousto-optic mode-locked high-pressure iodine photodissociation (=1.315m) oscillator system, capable of generating pulse-widths as short as 160 ps is described. Good agreement is found between theory and experiment for the pressure-dependence of the modelocked pulse-width. The results indicate that pulse-widths approaching 100ps should be obtainable with this type of system.     

Initial Pyrolysis Reactions in Unmodified and Flame-Retardant Cotton

Abstract

Thermogravimetric data were used to make Arrhenius plots for the vacuum pyrolyses of unmodified cotton and of cotton finished with various add-ons of THPOH-NH3 and THPS-urea-Na₂HPO₄ flame retardants. These plots show that all pyrolyses occurred in consecutive stages: The first and second initial stages, associated with the less ordered regions of the cotton fibers, and the main cellulose pyrolysis reaction, associated with cellulose crystallites. Cotton decrystallized by ball milling showed only the two initial pyrolysis stages. The second stage followed first-order kinetics. The first pyrolysis stage in unmodified cotton was characterized by a moderately low activation energy and by a large negative entropy of activation; the second stage showed a larger activation energy and a less negative entropy of activation. Mechanisms involving cellulose chain scission and chain unzipping are proposed for the first and second stages, respectively. Add-on of the two flame retardants had contrasting effects on the two initial pyrolysis stages. These effects are explained in terms of the way in which the flame retardants are deposited in the less ordered regions of cotton fibers.     

Preparation of Stereoregular Isotactic Poly(mandelic acid) through Organocatalytic Ring‐Opening Polymerization of a Cyclic O‐Carboxyanhydride

Poly(mandelic acid) (PMA) is an aryl analogue of poly(lactic acid) (PLA) and a biodegradable analogue of polystyrene. The preparation of stereoregular PMA was realized using a pyridine/mandelic acid adduct (Py?MA) as an organocatalyst for the ring‐opening polymerization (ROP) of the cyclic O‐carboxyanhydride (manOCA). Polymers with a narrow polydispersity index and excellent molecular‐weight control were prepared at ambient temperature. These highly isotactic chiral polymers exhibit an enhancement of the glass‐transition temperature (T_g) of 15 °C compared to the racemic polymer, suggesting potential future application as high‐performance commodity and biomedical materials.     

Initiation of Protein Synthesis with Non-Canonical Amino Acids In Vivo

By transplanting identity elements into E. coli tRNA^fMet, we have engineered an orthogonal initiator tRNA (itRNA^Ty2) that is a substrate for Methanocaldococcus jannaschii TyrRS. We demonstrate that itRNA^Ty2 can initiate translation in vivo with aromatic non-canonical amino acids (ncAAs) bearing diverse sidechains. Although the initial system suffered from low yields, deleting redundant copies of tRNA^fMet from the genome afforded an E. coli strain in which the efficiency of non-canonical initiation equals elongation. With this improved system we produced a protein containing two distinct ncAAs at the first and second positions, an initial step towards producing completely unnatural polypeptides in vivo. This work provides a valuable tool to synthetic biology and demonstrates remarkable versatility of the E. coli translational machinery for initiation with ncAAs in vivo.