Complexation of lead(II) by chlorogenic acid: experimental and theoretical study

Density functional theory (DFT) structure calculations and time-dependent DFT electronic excitation calculations have been performed on chlorogenic acid (H(3)CGA), a polyphenolic compound, used as a model molecule of humic substances. The different deprotonated forms of H(3)CGA have also been investigated. H(3)CGA is a multisite ligand that presents several metal complexing sites in competition, notably the carboxylic and catechol moieties. In low acidic aqueous medium, the complexation of Pb(II) has been followed by electronic absorption spectrometry. The formation of two complexes of stoichiometry metal:ligand 1:1 (log beta(1:1) = 3.39) and 2:1 (log beta(2:1) = 7.12) has been highlighted with use of chemometric methods. The theoretical spectrum of the 1:1 complex obtained by TD-DFT methodology shows the formation of a chelate [Pb(H(2)CGA)(H(2)O)(3)](+) with the metal fixation at the level of the carboxylate function. The second complexing site, the catechol moiety, is rapidly involved in the formation of the 2:1 complex from molar ratios [metal]/[ligand] higher than 0.1. The electronic transitions calculated for both free ligand and complexes involved the same molecular orbitals, and no ligand-metal or metal-ligand charge transfer is observed.     

Shallow Water equations for Non-Newtonian fluids

The purpose of this paper is to provide a consistent thin layer theory for some Non-Newtonian fluids that are incompressible and flowing down an inclined plane under the effect of gravity. We shall provide a better understanding of the derivation of Shallow Water models in the case of power-law fluids and Bingham fluids. The method is based on asymptotic expansions of solutions of the Cauchy Momentum equations in the Shallow Water scaling and in the neighbourhood of steady solutions so that we can close the average equations on the fluid height h and the total discharge rate q. Such a method has been first introduced in the case of Newtonian fluids where the computations are proved to be rigorous (Vila, in preparation [20]; Bresch and Noble, 2007 [9]) whereas the more complex case of arbitrary topography has been treated formally (Boutounet et al., 2008 [5]). The well posedness of the free surface Cauchy Momentum equations for these Non-Newtonian fluids is still an open problem: the computations carried out here are only formal.     

A new supramolecular assembly obtained from the combination of silver(I) cations with a thiophosphorylated cavitand

The new tetra-thiophosphonatocavitand 1 in its iiii configuration extracts quantitatively Ag+ ions from aqueous solutions; the tetranuclear complex [1(2).Ag4Pic4] was selectively formed and characterized in the solid state by X-ray diffraction which revealed the formation of a new dimeric assembly through Ag+ coordination.     

Synthesis of helix 69 of Escherichia coli 23S rRNA containing its natural modified nucleosides,m(3)Psi and Psi

The synthesis of 3-methylpseudouridine (m(3)Psi) phosphoramidite, 5'-O-[benzhydryloxybis(trimethylsilyloxy)silyl]-2'-O-[bis(2-acetoxyethoxy)methyl]-3-methylpseudouridine-3'-(methyl-N,N-diisopropyl)phosphoramidite, is reported. Selective pivaloyloxymethyl protection of the Psi N1 followed by methylation at N3 was used to generate the naturally occurring pseudouridine analogue. The m(3)Psi phosphoramidite was used in combination with pseudouridine (Psi) and standard base phosphoramidites to synthesize a 19-nucleotide RNA representing helix 69 of Escherichia coli 23S ribosomal RNA (rRNA) (residues 1906-1924), containing a single m(3)Psi at position 1915 and two Psi's at positions 1911 and 1917. Our synthesis of the fully modified helix 69 RNA demonstrates the ability to make milligram quantities of RNA that can be used for further high-resolution structure studies. Site-selective introduction of the methyl group at the N3 position of pseudouridine at position 1915 causes a slight increase in the thermodynamic stability of the RNA hairpin relative to pseudouridine; RNAs containing either uridine or 3-methyluridine at position 1915 have similar stability. One-dimensional imino proton NMR and circular dichroism spectra of the modified RNAs reveal that the methyl group does not cause any substantial changes in the RNA hairpin structure.     

FT-IR and FT-FIR studies of vanadium,molybdenum and tungsten oxides supported on different carriers

In the far IR region at low molybdenum loadings, Mo-SiO₂ catalysts present a pseudomolybdate or a polymolybdate species, while bulk-like MoO₃ appears at loadings close to the geometrical monolayer coverage. W-SiO₂ and V-SiO₂ spectra show bands close to those observed on the corresponding bulk oxides.In the case of TiO₂, Al₂O₃, ZrO₂ supported catalysts, a band is observed near 1000 cm^–1 which is assigned to the Mo=O stretching vibration of coordinatively unsaturated Mo ⁿ⁺ ions showing a stronger interaction with the support than one observed on silica.     

Efficient and convergent stereocontrolled spiroannulation of ketones

Upon treatment with tBuOK/H₂O, a variety of ω-halo-β-keto-ketals undergo smooth cyclisation, affording in excellent yields mono-protected [n,m] spiro bicyclic diketones. This transformation is highly stereoselective producing, in all cases, the diastereoisomerically pure spiro derivatives.     

Synthesis of 15N-enriched pseudouridine derivatives

[reaction: see text]. A procedure for the chemical synthesis of [3-15N]-labeled pseudouridine and a methylated derivative was developed. A suitably protected pseudouridine precursor was nitrated at N3 followed by treatment with 15NH4Cl to afford the 15N-labeled product in six steps with a 20% yield. This methodology will allow for the production of RNAs with [3-15N]pseudouridine and [3-15N-methyl]pseudouridine at specific locations.     

Solid-phase synthesis and characterization of a novel fullerene-peptide derived from histone H3

A peptide analogue from a histone H3 protein containing the L-fulleropyrrolidino-glutamic acid has been prepared by a solid-phase approach and has been fully characterized. By molecular modelling it was verified that this peptide derivative is able to retain a binding capacity to the MHC (major histocompatibility complex) molecule similar to that of the cognate epitope.     

SUBPOL: a novel SUcrose-Based Polymer support for solid-phase peptide synthesis and affinity chromatography applications

A novel SUcrose-Based Polymer support (SUBPOL) with tailored morphology suitable for the use in solid-phase peptide synthesis (SPPS) is described, and its application as a hydrophilic affinity matrix for the specific removal of fibrinogen from human plasma is demonstrated. After suspension polymerization of partly methacrylated 2,1':4,6-di-O-isopropylidene sucrose and subsequent removal of the protecting groups, hydrophilic spherical polymer beads were obtained. The morphology of the resulting resin was controlled by variation of the porogen as well as the average degree of substitution with respect to the methacryloyl groups of the monomer mixture. After introduction of amino groups for a permanent attachment of immobilized peptide ligands, prevention of unintended esterification during SPPS was achieved by silylation of remaining hydroxy groups. Alternatively, a Rink amide linker was introduced prior to SPPS to allow cleavage and subsequent analysis of the peptide assembled on the SUBPOL resins. Two hexapeptides of sequence kwiivw and hffflw, consisting of d-amino acids, as well as a 19-mer peptide corresponding to the sequence GSGVRGDFGSLAPRVARQL of the VP1 protein from the foot-and-mouse disease virus (FMDV) were successfully prepared both manually or in a semi-automated process on SUBPOL resins according to the Fmoc/tBu strategy. Yields and purities were comparable to peptides prepared on commercially available polystyrene resins. A specific affinity adsorbent containing the fibrinogen-binding pentapeptide GPRPK was prepared by SPPS on SUBPOL resins of different morphology, and the strong impact of the affinity matrix on adsorption performance was demonstrated.