The first example of a nitrile hydratase model complex that reversibly binds nitriles

Nitrile hydratase (NHase) is an iron-containing metalloenzyme that converts nitriles to amides. The mechanism by which this biochemical reaction occurs is unknown. One mechanism that has been proposed involves nucleophilic attack of an Fe-bound nitrile by water (or hydroxide). Reported herein is a five-coordinate model compound ([Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+)) containing Fe(III) in an environment resembling that of NHase, which reversibly binds a variety of nitriles, alcohols, amines, and thiocyanate. XAS shows that five-coordinate [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) reacts with both methanol and acetonitrile to afford a six-coordinate solvent-bound complex. Competitive binding studies demonstrate that MeCN preferentially binds over ROH, suggesting that nitriles would be capable of displacing the H(2)O coordinated to the iron site of NHase. Thermodynamic parameters were determined for acetonitrile (DeltaH = -6.2(+/-0.2) kcal/mol, DeltaS = -29.4(+/-0.8) eu), benzonitrile (-4.2(+/-0.6) kcal/mol, DeltaS = -18(+/-3) eu), and pyridine (DeltaH = -8(+/-1) kcal/mol, DeltaS = -41(+/-6) eu) binding to [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) using variable-temperature electronic absorption spectroscopy. Ligand exchange kinetics were examined for acetonitrile, iso-propylnitrile, benzonitrile, and 4-tert-butylpyridine using (13)C NMR line-broadening analysis, at a variety of temperatures. Activation parameters for ligand exchange were determined to be DeltaH(+ +) = 7.1(+/-0.8) kcal/mol, DeltaS(+ +) = -10(+/-1) eu (acetonitrile), DeltaH(+ +) = 5.4(+/-0.6) kcal/mol, DeltaS(+ +) = -17(+/-2) eu (iso-propionitrile), DeltaH(+ +) = 4.9(+/-0.8) kcal/mol, DeltaS(+ +) = -20(+/-3) eu (benzonitrile), and DeltaH(+ +) = 4.7(+/-1.4) kcal/mol DeltaS(+ +) = -18(+/-2) eu (4-tert-butylpyridine). The thermodynamic parameters for pyridine binding to a related complex, [Fe(III)(S(2)(Me2)N(3)(Pr,Pr))](+) (DeltaH = -5.9(+/-0.8) kcal/mol, DeltaS = -24(+/-3) eu), are also reported, as well as kinetic parameters for 4-tert-butylpyridine exchange (DeltaH(+ +) = 3.1(+/-0.8) kcal/mol, DeltaS(+ +) = -25(+/-3) eu). These data show for the first time that, when it is contained in a ligand environment similar to that of NHase, Fe(III) is capable of forming a stable complex with nitriles. Also, the rates of ligand exchange demonstrate that low-spin Fe(III) in this ligand environment is more labile than expected. Furthermore, comparison of [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) and [Fe(III)(S(2)(Me2)N(3)(Pr,Pr))](+) demonstrates how minor distortions induced by ligand constraints can dramatically alter the reactivity of a metal complex.     

Uptake of weathered p,p′-DDE by plant species effective at accumulating soil elements

Ten plant species previously shown to accumulate inorganic elements effectively from natural solids were grown under field conditions in p,p′-dichlorodiphenyldichloroethane (p,p′-DDE) contaminated soil. The plant species, which included rye, mustard, canola, vetch, pigeonpea, clover, peanut, and 3 cultivars of white lupin, represented both monocots and dicots, as well as two major families within the dicots: the Brassicaceae and the Fabaceae. The plants varied widely in their ability to phytoextract and translocate weathered p,p′-DDE. The percentage of contaminant phytoextracted ranged from 0.06% (white lupin) to 0.22% (clover, vetch), and the translocation factors (TF; contaminant concentration ratio of stems to roots) ranged from 0.04 (clover, white lupin) to 0.37 (canola). An inverse relationship exists between the amount of contaminant in the roots as measured by the root BCF (bioconcentration factor; dry weight contaminant concentration ratio of root to soil) and the TF. Duplicate mounds of each species were periodically amended with nitrogen (N), phosphorus (P), nitrogen and phosphorus together (N/P); a minus phosphorus treatment involved the addition of AlSO₄ to the soil prior to planting. The effect of nutrient regime on plant biomass, p,p′-DDE uptake and translocation, and inorganic element content varied greatly among the 10 plant species. For some species (rye, vetch, pigeonpea, clover, white lupin), reductions or non-significant changes in p,p′-DDE uptake were observed under the nutrient treatments and were not correlated with plant biomass effects. For mustard, canola, and peanut, the percentage of p,p′-DDE phytoextracted in the various treatments was more than doubled and was directly correlated with a two-fold increase in total plant biomass. Although it is generally assumed that fertilizer amendments will enhance the phytoremediation of organic and inorganic pollutants, the data here suggest that such effects are highly species specific and in some cases may actually decrease remediation potential.     

Partial order complementation graphs

Two partial ordersP andQ on a setX arecomplementary (written asPQ) if they share no ordered pairs (except for loops) but the transitive closure of the union is all possible ordered pairs. For each positive integern we form a graph Pos _n consisting of all nonempty partial orders on {1, ,n} with edges denoting complementation. We investigate here properties of the graphs Pos _n . In particular, we show:

1-(Organosulfonyloxy)-3(1H)-1,2-benziodoxoles: Preparation and Reactions with Alkynyltrimethylsilanes

Organosulfonyloxy derivatives of 1,2-benziodoxol-3(1H)-one (3a-c) and 3,3-bis(trifluoromethyl)-3(1H)-1,2-benziodoxole (5a-c) can be prepared in high yield by the reaction of 1-hydroxybenziodoxoles 1 or 4 and the corresponding sulfonic acids or Me(3)SiOTf in the form of stable, but moderately hygroscopic, microcrystalline solids. Reaction of the triflate derivatives 3a and 5a with alkynyltrimethylsilanes affords either alkynyliodonium triflates 6, or (E)-beta-(trifluoromethanesulfonyloxy)alkenyliodonium triflates 7, while the same reaction in the presence of pyridine selectively gives the respective 1-alkynylbenziodoxoles 8 and 9 in 82-90% yield.     

Propagating transverse electric and transverse magnetic modes in liquid crystal-clad planar waveguides

ABSTRACT

In a planar dielectric waveguide, weak confinement of a propagating mode in a high index core leads to a measurable evanescent interaction with the cladding. In this work, we study the effect of a reorientable anisotropic cladding on the behaviour of Transverse Electric (TE) and Transverse Magnetic (TM) mode polarisations using a liquid crystal (LC)-clad waveguide architecture. The polarised evanescent field of a guided mode interacts with a voltage-tunable birefringent LC cladding to deflect an out-coupled beam. Experimental measurements are coupled with a theoretical framework and show good consistency with simulation results. We isolate the effect of mode confinement by changing the thickness of the high index core. Interactions between the LC index ellipsoid and the mode polarisation are probed by changing the initial alignment of the LC. Finally, we examine the difference in deflection between TE and TM modes, which incorporates both a change in mode confinement and a difference in LC index components.     

Anisole hydrogenation with well-characterized polyoxoanion- and tetrabutylammonium-stabilized Rh(0) nanoclusters: effects of added water and acid, plus enhanced catalytic rate, lifetime, and partial hydrogenation selectivity

Following a comprehensive look at the arene hydrogenation literature by soluble nanocluster catalysts, six key, unfulfilled goals in nanocluster arene hydrogenation catalysis are identified. To begin to address those six goals, well-characterized polyoxoanion- and tetrabutylammonium-stabilized Rh(0) nanoclusters have been synthesized by the reduction of the precisely defined precatalyst [Bu(4)N](5)Na(3)[(1,5-COD)Rh small middle dotP(2)W(15)Nb(3)O(62)] with H(2) in propylene carbonate solvent. These Rh(0) nanoclusters are characterized by their stoichiometry of formation, transmission electron microscopy, and the two rate constants which characterize their mechanism of formation; previous studies in our laboratories have provided additional characterization of polyoxoanion-stabilized Rh(0) nanoclusters. Propylene carbonate solutions of the Rh(0) nanoclusters catalyze the hydrogenation of anisole (methoxybenzene) under mild conditions (22-78 degrees C, 30-40 psig H(2)). Proton donors such as water or HBF(4) small middle dotEt(2)O are discovered to affect both nanocluster formation and nanocluster arene hydrogenation catalysis. Under identical conditions, the Rh(0) nanoclusters are 10-fold more active than a commercially available, oxide-supported 5% Rh/Al(2)O(3) catalyst of the same average metal-particle size. A series of lifetime experiments shows that the Rh(0) nanoclusters are capable of at least 2600 total turnovers (TTO), a lifetime significantly longer than the approximately 100 TTO often seen for nanocluster arene hydrogenation catalysts, and a lifetime slightly better than the prior record of 2000 TTO for a literature nanocluster system. The present polyoxoanion-stabilized Rh(0) nanoclusters also display a record, albeit modest, 30% selectivity for the partial hydrogenation of anisole to 1-methoxycyclohexene with an overall yield of up to 8% at higher temperatures. In comparison to the 5% Rh/Al(2)O(3) catalyst, the polyoxoanion-stabilized nanoclusters yield a 4.7-fold higher maximum yield of 1-methoxycyclohexene. Finally, the seven main findings of the present work are summarized, including how they address five of the aforementioned six main goals in nanocluster arene hydrogenation.     

Amphiphilic treelike rods at interfaces: layered stems and circular aggregation

Amphiphilic dendron-rod molecules with three hydrophilic poly(ethylene oxide) (PEO) branches attached to a hydrophobic octa-p-phenylene rod stem were investigated for their ability to form two-dimensional micellar structures on a solid surface. A treelike shape of the molecules was reported to be a major factor in the formation of nonplanar micellar structures in solution and in the bulk state (cylindrical and spherical). We observed that in these treelike amphiphilic molecules the hydrophilic terminated dendron branches assemble themselves in surface monolayers with the formation of two-dimensional layered or circular micellar structures. We suggested the formation of the planar ribbon-like structures with interdigitated layering within the loosely packed monolayers and circular, ringlike structures (2D circular aggregates) in the precollapsed state.     

Utilization of 1-oxa-2,2-(dimesityl)silacyclopentane acetals in the stereoselective synthesis of polyols

We have developed a route for the stereoselective synthesis of 1-oxa-2,2-(dimesityl)silacyclopentane acetals, intermediates in the synthesis of highly functionalized 1,3-diols. This route involves a diastereoselective conjugate addition reaction of a hydrosilyl anion, a subsequent diastereoselective enolate alkylation, and a fluoride-catalyzed intramolecular hydrosilylation reaction to afford the oxasilacyclopentane acetal. A highly selective nucleophilic substitution reaction, followed by oxidation of the C-Si bond, leads to the desired polyol.     

A copper-catalyzed C-N bond formation involving sp-hybridized carbons. A direct entry to chiral ynamides via N-alkynylation of amides

A copper-catalyzed new C-N bond formation involving a sp-hybridized carbon is described here leading to a facile entry for syntheses of chiral ynamides. This direct N-alkynylation of amides should have a significant impact on the future development of synthetic methodologies employing ynamides.