Recognition of DNA three-way junctions by metallosupramolecular cylinders: gel electrophoresis studies

The interaction of metallosupramolecular cylinders with DNA three-way junctions has been studied by gel electrophoresis. A recent X-ray crystal structure of a palindromic oligonucleotide forming part of a complex with such a cylinder revealed binding at the heart of a three-way junction structure. The studies reported herein confirm that this is not solely an artefact of crystallisation and reveal that this is a potentially very powerful new mode of DNA recognition with wide scope. The cylinders are much more effective at stabilizing three-way junctions than simple magnesium di-cations or organic or metallo-organic tetra-cations, with the M cylinder enantiomer being more effective than P. The recognition is not restricted to three-way junctions formed from palindromic DNA with a central AT step at the junction; non-palindromic three-way junctions and those with GC steps are also stabilised. The cylinder is also revealed to stabilise other Y-shaped junctions, such as that formed at a fraying point in duplex DNA (for example, a replication fork), and other DNA three-way junction structures, such as those containing unpaired nucleotides, perhaps by opening up this structure to access the central cavity.     

Development of an on-line high performance liquid chromatography detection system for human cytochrome P450 1A2 inhibitors in extracts of natural products

An on-line HPLC screening method for detection of inhibitors of human cytochrome P450 1A2 in extracts was developed. HPLC separation of extracts is connected to a continuous methoxyresorufin-O-demethylation (MROD) assay in which recombinant human P450 1A2 converts methoxyresorufin to its fluorescent metabolite resorufin. The system was tested with three P450 1A2 inhibitors, for which minimum detectable amounts (MDA) ranging from 0.7 to 9.5 ng were obtained. Analysis of a kava kava and a basil extract showed that the on-line system is applicable to complex mixtures, since in both extracts, peaks with P450 1A2 inhibiting activity were observed.     

An interpolation theorem for proper holomorphic embeddings

Given a Stein manifold x of dimension n > 1, a discrete sequence , and a discrete sequence where , there exists a proper holomorphic embedding satisfying f(a _j ) = b _j for every j = 1,2,... Forstnerič and Prezelj supported by grants P1-0291 and J1-6173, Republic of Slovenia. Kutzschebauch supported by Schweizerische National fonds grant 200021-107477/1. Ivarsson supported by The Wenner-Gren Foundations.     

Polymerization of aniline on polyaniline membranes

When solutions of aniline hydrochloride and ammonium peroxydisulfate were separated by a semipermeable cellulose membrane, the reactants met at the membrane and produced a polyaniline (PANI) membrane at the interface. The oxidative polymerization of aniline then proceeded in situ on the PANI-cellulose composite membrane. PANI was produced entirely at the monomer side of the membrane; about 80% conversion of aniline to PANI was observed after 24 h. The oxidation of aniline with peroxydisulfate consists in the transfer of electrons from aniline to the oxidant; it is proposed that electrons pass through the PANI membrane, which is conducting, and electroneutrality is maintained by the simultaneous transfer of protons. The reaction between aniline and peroxydisulfate thus takes place without the need for both reactant molecules to be in physical contact. The residual aniline is located only at its original side of the membrane, but the product of ammonium peroxydisulfate conversion, ammonium hydrogen sulfate, was found on both sides of the membrane. Fourier-transform infrared spectroscopy has been used to analyze PANI, the reaction residues and byproducts, and to prove that PANI is protonated with counter-ions of the sulfate type. Using this technique, we have detected only small differences in the molecular structure of PANI prepared with the membrane-separated reactants and in the polymerization when reactants were mixed; also, the molecular weights differed only marginally. The conductivity of both types of PANI was about the same. The repeated polymerization of aniline on the earlier prepared PANI-cellulose membrane yielded similar results, thus confirming the proposed concept of coupled electron- and proton-transfer through the PANI membrane.     

Iminonitroso Diels-Alder reactions for efficient derivatization and functionalization of complex diene-containing natural products

A remarkably efficient method for derivatization of complex diene-containing natural products by using stabilized iminonitroso Diels-Alder reactions is described. Turimycin H3, ergosterol, reductiomycin, isoforocidin, colchicine and thebaine were found to react with nitrosopyridines in a highly efficient regio- and stereoselective fashion. Preliminary bioactivity evaluations of turimycin cycloadducts are reported.     

Van der Waals complexes of Cu, Ag, and Au with hydrogen sulfide. The bonding character

The electronic and structural features of the Cu...SH2, Ag...SH2, and Au...SH2 complexes are investigated by using the spin-adapted restricted open-shell HF coupled cluster CCSD(T) method combined with the second-order spin-free Douglas-Kroll-Hess (DKH) relativistic approach. M...SH2 complexes are nonplanar with bonding energies -5.99, -1.99, and -9.08 mHartree, respectively. Comparison with analogous M...OH2 and M...NH3 complexes allows us to establish general features of the bonding between coinage metal atoms and ligand molecules with the participation of their lone electron pairs. Consistent interpretation of the interaction effects can be obtained by using the molecular orbital picture of the M...L region. The bonding character is explained by stressing the importance of the charge transfer from the lone pair of the ligand to the metal atom. Relativistic changes of the metal element electron affinity and polarizability facilitate the understanding of major trends in the pattern of interactions between the coinage metal atoms and different lone pair donating ligands.     

Computational study on spectral properties of the selected pigments from various photosystems: structure-transition energy relationship

In this study, the most important kinds of pigments (chlorophylls, bacteriochlorophylls, phycobilins, and carotenoids) from various photosystems were explored. For the most stable conformations, electronic transitions were determined at the TDDFT/6-31+G(d) level with the B3PW91 functional and compared to measured spectra. The group of carotenoids was also investigated at the TDA/TDDFT level with the BLYP functional. The energies of Qy transitions are systematically blue-shifted by about 50-100 nm in the case of (bacterio)chlorophyll and pheophytin molecules. Nevertheless, the correct relative order of the Q lines among various chlorophyll types was obtained through comparison with experimental results. Much better agreement was obtained for the Soret band, for which the differences between calculated and measured transitions were at most 35 nm. In the case of phycobilins, the first transition line was estimated to be at lower frequencies (around 500 nm) with a very similar blue shift of about 100 nm from experimental values. The influence of anchoring cysteine side chain(s) was found to be marginal. A dominant effect of the linear polyene chain on the determined spectral lines was found in the case of carotenoids. Nevertheless, the impact of beta-cycles and epoxy and keto groups is clearly visible as well. The high intensity of the first allowed transition matches different characters of the HOMO and LUMO. In the case of fucoxanthin, the TDA method also predicts the Bu- state to lie below the 1Bu+ state. Because the shift of electron transitions is approximately proportional to the size of the pi-conjugated system, the shift of the calculated transitions compared to experimental values is practically constant for the same excitations of (bacterio)chlorophyll and phycobilin molecules. However, this is not true for carotenoids, for which both the transition energy and the shift of the transition vary with the number of conjugated double bonds.     

Tetranuclear CoII, MnII, and CuII complexes of a novel binucleating pyrazolate ligand preorganized for the self-assembly of compact [2 x 2]-grid structures

A straightforward synthesis toward the preparation of the rigid pyrazolate ligand L(H) featuring bipyridyl side-arms is described, starting from 2,2'-bipyridyl-N-oxide as the sole organic building block. In this context, optimized procedures for the synthesis of the organic intermediates 6-acetyl-2,2'-bipyridine 1 and 6-methylcarboxy-2,2'-bipyridine 2 are reported. The new ligand comprises two proximate terpyridine-like binding sites and is shown to form discrete [2 x 2]-grid complexes with CoII, MnII, and CuII in a highly selective self-assembly process, even in the presence of excess metal precursor. The thus obtained complexes [Co4L4][Na(NO3)4](NO3) (3), [Mn4L4](PF6)4 (4), and [Cu4L4](ClO4)4 (5) are fully characterized, including X-ray crystallographic analyses, and their magnetic properties are discussed. All three complexes show weak to moderate antiferromagnetic coupling between the four nuclei. The stability of the grid structures proved very high, as dissociation or exchange between metal ions in solution was not observed in a set of competition experiments.     

The trans effect in square-planar platinum(II) complexes--a density functional study

The mechanism of substitution water exchange reactions in square planar trans-Pt[(NH(3))(2)T(H(2)O)](n+) complexes is studied (T = H(2)O, NH(3), OH(-), F(-), Cl(-), Br(-), H(2)S, CH(3)S(-), SCN(-), CN(-), PH(3), CO, CH(3)(-), H(-), C(2)H(4)). The trans effect is explained in terms of sigma-donation and pi-back-donation whose relative strengths are quantified by the changes of electron occupations of 5d platinum atomic orbitals. The sigma-donation strength is linearly correlated with the Pt-H(2)O (leaving ligand) bond length (trans influence). The kinetic trans effect strength correlates proportionally with the sigma-donation ability of the trans-ligand except the ligands with strong pi-back-donation ability that stabilizes transition state structure. The sigma-donation ability of the ligand is dependent on the sigma-donation strength of the ligand in the trans position. Therefore the trans effect caused by sigma-donation can be understood as a competition between the trans-ligands for the opportunity to donate electron density to the central Pt(II) atom. The influence of the trans effect on the reaction mechanism is also shown. For ligands with a very strong sigma-donation (e.g. CH(3)(-) and H(-)), the substitution proceeds by a dissociative interchange (I(d)) mechanism. Ligands with strong pi-back donation ability (e.g. C(2)H(4)) stabilize the pentacoordinated intermediate and the substitution proceeds by a two step associative mechanism. For ligands with weak sigma-donation and pi-back-donation abilities, the highest activation barriers have to be overcome and substitutions can be described by an associative interchange (I(a)) mechanism. The results are supported by the energy decomposition and the natural orbital analysis.