Synthesis of S-Glycosyl Xanthates by Phase Transfer Catalyzed Substitution of Glycosyl Halides

Abstract

Peracetylated glycosyl- and glycobiosyl bromides and chlorides 1-4 including acetochloroneuraminic acid 5 were stereoselectively transformed into their corresponding S-glycosyl xanthates 6-10 in high yield (91-98%) under phase transfer catalyzed conditions. The reactions occurred at room temperature using tetrabutylammonium hydrogen sulfate as the catalyst. The substitutions gave complete inversion of configuration and thus proceeded by an S_N2 type mechanism. Changing the organic solvent from methylene chloride to ethyl acetate had no detrimental effect on the outcome of the reactions but avoided an undesirable side reaction between the xanthate anion and methylene chloride.     

Interaction of dinuclear ruthenium(II) supramolecular cylinders with DNA: sequence-specific binding, unwinding, and photocleavage

Metallosupramolecular chemistry was used to design a new class of synthetic agents, namely, tetracationic supramolecular cylinders, that bind strongly and noncovalently in the major groove of DNA. To gain additional information on interactions of the cylinders with DNA we explored DNA unwinding and sequence-specific binding properties, as well as DNA photonuclease activity of ruthenium(II) metallosupramolecular cylinder [Ru(2)L(3)](4+), where L is a bis-pyridylimine ligand. We found that [Ru(2)L(3)](4+) unwinds negatively supercoiled plasmid DNA and exhibits binding preference to regular alternating purine-pyrimidine sequences in a similar way to the [Fe(2)L(3)](4+) analogue. Photocleavage studies showed that, unlike [Fe(2)L(3)](4+), [Ru(2)L(3)](4+) induces single-strand breaks on irradiation by visible and UVA light and cleaves DNA mainly at guanine residues contained preferentially in regularly alternating purine-pyrimidine nucleotides. As [Ru(2)L(3)](4+) binds and cleaves DNA in a sequence-dependent manner, it may provide a useful tool for basic and applied biology, such as for controlled manipulation of the genome.     

Neutron scattering studies of K(3)H(SO(4))(2) and K(3)D(SO(4))(2): The particle-in-a-box model for the quantum phase transition

In the crystal of K(3)H(SO(4))(2) or K(3)D(SO(4))(2), dimers SO(4)???H???SO(4) or SO(4)???D???SO(4) are linked by strong centrosymmetric hydrogen or deuterium bonds whose O???O length is ≈2.50 A?. We address two open questions. (i) Are H or D sites split or not? (ii) Is there any structural counterpart to the phase transition observed for K(3)D(SO(4))(2) at T(c) ≈ 85.5 K, which does not exist for K(3)H(SO(4))(2)? Neutron diffraction by single-crystals at cryogenic or room temperature reveals no structural transition and no resolvable splitting of H or D sites. However, the width of the probability densities suggest unresolved splitting of the wavefunctions suggesting rigid entities H(L1∕2) -H(R1∕2) or D(L1∕2) -D(R1∕2) whose separation lengths are l(H) ≈ 0.16 A? or l(D) ≈ 0.25 A?. The vibrational eigenstates for the center of mass of H(L1∕2) -H(R1∕2) revealed by inelastic neutron scattering are amenable to a square-well and we suppose the same potential holds for D(L1∕2) -D(R1∕2). In order to explain dielectric and calorimetric measurements of mixed crystals K(3)D((1 - ρ))H(ρ)(SO(4))(2) (0 ≤ ρ ≤ 1), we replace the classical notion of order-disorder by the quantum notion of discernible (e.g., D(L1∕2) -D(R1∕2)) or indiscernible (e.g., H(L1∕2) -H(R1∕2)) components depending on the separation length of the split wavefunction. The discernible-indiscernible isostructural transition at finite temperatures is induced by a thermal pure quantum state or at 0 K by ρ.     

Radio-high-performance liquid chromatography for ecotoxicity assessment of insect growth regulators

The described radiochromatographic method permits fast and high-sensitivity monitoring of soil biodegradation products of an insect growth regulator for its environmental risk assessment. We analyzed and compared two diastereoisomers of ethyl N-(2-(4-[(2-hydroxycyclohexyl) methyl]phenoxy)ethyl)carbamate, namely its cis-(1S,2S) isomer JN-W330 and a trans-(1R,2S) isomer JN-W331. Microbial conversion of the cis-isomer to the trans-isomer was proved by mass spectrometry analyzer. Among the chromatographic columns tested, the best separation was found with a 125 mm x 4 mm i.d. column packed with Supersphere 100 RP-C18, 5 microm and an acetonitrile-water gradient. The detection limit for the both isomers was in the range of 120-250 Bq (0.3-0.8 ng) at a concentration of 2 ng/ml with radiometric detection. The calibration curves for standard solutions were linear in the range of 150Bq-150kBq (r = 0.996). The method enabled us to compare the analyzed juvenoids with biologically active oostatic peptides in terms of their environmental safety.     

Hybrid organic-inorganic coatings and films containing conducting polyaniline nanoparticles

Hybrid organic-inorganic coatings and free-standing films made from [3-(glycidyloxy)propyl]trimethoxysilane, amino-terminated poly(oxypropylene) (Jeffamine D-230), colloidal polyaniline nanoparticles and, in some cases, colloidal nanosilica were prepared and characterized. HCl or 4-methylbenzene-1-sulfonic acid were used as catalysts for the sol-gel process and pH tuning, water-propan-2-ol mixture as a solvent. Electrical and mechanical properties and surface morphology of films were studied. The coatings were blue and non-conducting, or green and conducting, depending on preparation conditions. They have a smoother surface than in-situ polymerized polyaniline films.     

Complexes of Click‐Derived Bistriazolylpyridines: Remarkable Electronic Influence of Remote Substituents on Thermodynamic Stability as well as Electronic and Magnetic Properties

2,6‐Bis(1,2,3‐triazol‐4‐yl)pyridine (btp) ligands with substitution patterns ranging from strongly electron‐donating to strongly electron‐accepting groups, readily prepared by means of Cu‐catalyzed 1,3‐dipolar cycloaddition (the “click” reaction), were investigated with regard to their complexation behavior, and the properties of the resulting transition‐metal compounds were compared. Metal–btp complexes of 1:1 stoichiometry, that is, [Ru(btp)Cl₂(dmso)] and [Zn(btp)Br₂], could be isolated and were crystallographically characterized: they display octahedral and trigonal‐bipyramidal coordination geometries, respectively, and exhibit high aggregation tendencies due to efficient π–π stacking leading to low solubilities. Metal–btp complexes of 1:2 stoichiometry, that is, [Fe(btp)₂]²⁺ and [Ru(btp)₂]²⁺, could also be synthesized and their metal centers show the expected octahedral coordination spheres. The iron compounds exhibit quite a complex magnetic behavior in the solid state including spin crossover near room temperature, and hysteresis and locking into high‐spin states on tempering at 400 K, depending on the substituents on the btp ligands. Cyclic voltammetry studies of [Ru(btp)₂]²⁺ reveal strong modulation of the oxidation potentials by more than 0.6 V and a clear linear correlation to the Hammett constant (σ_para) of the substituent at the pyridine core. Isothermal titration calorimetry was used to measure the thermodynamics of the Fe^II–btp complexation process and enabled accurate determination of the complexation enthalpies, which display a linear relationship with the σ_para values for the terminal phenyl substituents. Detailed NMR spectroscopic studies finally revealed that in the case of Fe^II complexation, dynamics are rapid for all investigated btp derivatives in acetonitrile, while replacing Fe^II by Ru^II or changing the solvent to dichloromethane effectively slows down ligand exchange. The results nicely demonstrate the utility of substituent parameters, originally developed for linear free‐energy relationships to explain reactivity in organic reactions, in coordination chemistry, and to illustrate the potential to custom‐design btp ligands and complexes thereof with predictable properties. The fast equilibration of the [Fe(btp)₂]²⁺ complexes together with their tunable stability and interesting magnetic properties should enable the design of dynamic metallosupramolecular materials with advantageous properties.     

In silico mutagenesis and docking study of Ralstonia solanacearum RSL lectin: performance of docking software to predict saccharide binding

In this study, in silico mutagenesis and docking in Ralstonia solanacearum lectin (RSL) were carried out, and the ability of several docking software programs to calculate binding affinity was evaluated. In silico mutation of six amino acid residues (Agr17, Glu28, Gly39, Ala40, Trp76, and Trp81) was done, and a total of 114 in silico mutants of RSL were docked with Me-α-L-fucoside. Our results show that polar residues Arg17 and Glu28, as well as nonpolar amino acids Trp76 and Trp81, are crucial for binding. Gly39 may also influence ligand binding because any mutations at this position lead to a change in the binding pocket shape. The Ala40 residue was found to be the most interesting residue for mutagenesis and can affect the selectivity and/or affinity. In general, the docking software used performs better for high affinity binders and fails to place the binding affinities in the correct order.     

Immobilization in biotechnology and biorecognition: from macro- to nanoscale systems

Biological molecules such as enzymes, cells, antibodies, lectins, peptide aptamers, and cellular components in an immobilized form are extensively used in biotechnology, in biorecognition and in many medicinal applications. This review provides a comprehensive summary of the developments in new immobilization materials, techniques, and their practical applications previously developed by the authors. A detailed overview of several immobilization materials and technologies is given here, including bead cellulose, encapsulation in ionotropic gels and polyelectrolyte complexes, and various immobilization protocols applied onto surfaces. In addition, the review summarises the screening and design of an immobilization protocol, practical applications of immobilized biocatalysts in the industrial production of metabolites, monitoring, and control of fermentation processes, preparation of electrochemical/optical biosensors and biofuel cells.