SERS--a single-molecule and nanoscale tool for bioanalytics

Surface enhanced Raman scattering (SERS) at extremely high enhancement level turns the weak inelastic scattering effect of photons on vibrational quantum states into a structurally sensitive single-molecule and nanoscale probe. The effect opens up exciting opportunities for applications of vibrational spectroscopy in biology. The concept of SERS can be extended to two-photon excitation by exploiting surface enhanced hyper-Raman scattering (SEHRS). This critical review introduces the physics behind single-molecule SERS and discusses the capabilities of the effect in bioanalytics (100 references).     

Modified Nucleotides for Discrimination between Cytosine and the Epigenetic Marker 5‐Methylcytosine

5‐Methyl‐2′‐deoxycytosine, the most common epigenetic marker of DNA in eukaryotic cells, plays a key role in gene regulation and affects various cellular processes such as development and carcinogenesis. Therefore, the detection of 5mC can serve as an important biomarker for diagnostics. Here we describe that modified dGTP analogues as well as modified primers are able to sense the presence or absence of a single methylation of C, even though this modification does not interfere directly with Watson–Crick nucleobase pairing. By screening several modified nucleotide scaffolds, O⁶‐modified 2′‐deoxyguanosine analogues were identified as discriminating between C and 5mC. These modified nucleotides might find application in site‐specific 5mC detection, for example, through real‐time PCR approaches.     

Kinetic study of free‐radical polymerization photoinitiated by cyanine‐borate salts. II.

A series of cyanine butyltriphenylborate salts were prepared and tested as initiators of free‐radical polymerization photoinitiated via a photoinduced electron‐transfer process. For the majority of the tested series, the highest rate of photoinitiated free‐radical polymerization was observed when sec‐butyl radicals were formed. Essentially, there was no influence of the quantum yield of the free‐radical formation on the rate of the free‐radical polymerization initiated by the cyanine‐borate salts. The experimental data revealed that the relationship between the rate of polymerization and the free energy change for the electron transfer displayed typical Marcus region kinetic behavior. The photoreduction of the cyanine butyltriphenylborate salts produced colorless products. The efficiency of the bleached‐dye formation had no effect on the overall efficiency of photoinitiated polymerization. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 2365–2374, 2000     

Crystal and molecular structures of isomeric 2-morpholino-2-thiono-4-methyl-1,3,2-dioxaphosphinane and 2-morpholino-2-oxo-4-methyl-1,3,2-dioxaphosphinane

Two isomeric pairs of compounds, cis- and trans-2-morpholino-2-thiono-4-methyl-1,3,2-dioxaphosphinane ( 1A + 1B ) and 2-morpholino-2-oxo-4-methyl-1,3,2-dioxaphosphinane ( 2A + 2B ) were obtained and separated into the pure compounds by silica gel chromatography. Attempts at crystallization afforded 1A , 1B , and 2B . Each crystalline isomer was studied by the X-ray technique, and each crystal and molecular structures assigned. These studies revealed that 1B and 2B have exocyclic 4-CH₃ and sulfur (for 1B ) or 4-CH₃ and oxygen (for 2B ) in the diequatorial position (cis-geometry), while compound 1A possesses the 4-CH₃ group in equatorial position while sulfur is in an axial position (trans-geometry). For all the examined compounds, all the basic geometrical parameters, such as bond lengths, bond and torsion angles, and the deformation of a chair conformation of the six-membered heterocyclic rings, have been established. Such unambiguous assignment of cis-trans geometry in both pairs of 1 and 2 allowed us to confirm the stereoretentive PS → PO conversion by means of OXONE® and the stereoinvertive mechanism of formic-acid catalyzed hydrolysis of phosphorothiomorpholidates. © 1998 John Wiley & Sons, Inc. Heteroatom Chem 9:271–279, 1998     

Saffron yellow: characterization of carotenoids by high performance liquid chromatography with electrospray mass spectrometric detection

Saffron is one of the oldest natural dyestuffs and is obtained from the dried stigmata of Crocus sativus L. Nowadays, saffron is considered as an invaluable spice of golden‐yellow hue, a precious ingredient in the Eastern and Mediterranean cuisines. It is characterized by a bitter taste that is caused by the chemical properties of its constituents. The yellowness of saffron results from the presence of crocins (glycosyl esters of crocetin), its main color compounds, which are examined in the present study in the crude methanol extracts by high performance liquid chromatography (HPLC) coupled with spectrophotometric and electrospray mass spectrometric detection (HPLC–UV‐Vis–ESI MS). This technique allowed the separation and identification of trans‐ and cis‐isomers of crocins. Their mass spectra registered in the negative ion mode comprised the quasi‐molecular and fragment ions, as well as a range of other ions. Doubly charged ions were found for trans‐isomers only, due to the high symmetry of their molecules. Modification of the eluent allowed the identification of several signals corresponding to adduct ions of crocins with the used additives. Copyright © 2009 John Wiley & Sons, Ltd.     

Diels-Alder ligation of peptides and proteins

The development of the Diels-Alder cycloaddition as a new method for the site-specific chemoselective ligation of peptides and proteins under mild conditions is reported. Peptides equipped with a 2,4-hexadienyl ester and an N-terminal maleimide react in aqueous media to give cycloadducts in high yields and depending on the amino acid sequence with high stereoselectivity. Except for the cysteine SH group the transformation is compatible with all amino acid side chain functional groups. For ligation to proteins the hexadienyl group was attached to avidin and streptavidin noncovalently by means of complex formation with a biotinylated peptide or by covalent attachment of a hexadienyl ester-containing label to lysine side chains incorporated into the proteins. Site-specific attachment of the hexadienyl unit into a Rab protein was achieved by means of expressed protein ligation followed by protection of the generated cysteine SH by means of Ellman's reagent. The protein reacted with different maleimido-modified peptides under mild conditions to give the fully functional cycloadducts in high yield. The results demonstrate that the Diels-Alder ligation offers an advantageous and technically straightforward new opportunity for the site-specific equipment of peptides and proteins with further functional groups and labels. It proceeds under very mild conditions and is compatible with most functional groups found in proteins. Its combination with other ligation methods, in particular expressed protein ligation is feasible.     

Formation of ti(28) ln cages, the highest nuclearity polyoxotitanates (ln=la, ce)

The solvothermal reactions of Ti(OEt)(4) with LnCl(3) (Ln=La, Ce) produced new Ti(28) Ln cages, in which the Ln(3+) ions are coordinated within a metallocrown arrangement, which represents the highest nuclearity cages of this type.