Mechanism of formation of hydrogen trioxide (HOOOH) in the ozonation of 1,2-diphenylhydrazine and 1,2-dimethylhydrazine: an experimental and theoretical investigation

Low-temperature (-78 degrees C) ozonation of 1,2-diphenylhydrazine in various oxygen bases as solvents (acetone-d(6), methyl acetate, tert-butyl methyl ether) produced hydrogen trioxide (HOOOH), 1,2-diphenyldiazene, 1,2-diphenyldiazene-N-oxide, and hydrogen peroxide. Ozonation of 1,2-dimethylhydrazine produced besides HOOOH, 1,2-dimethyldiazene, 1,2-dimethyldiazene-N-oxide and hydrogen peroxide, also formic acid and nitromethane. Kinetic and activation parameters for the decomposition of the HOOOH produced in this way, and identified by (1)H, (2)H, and (17)O NMR spectroscopy, are in agreement with our previous proposal that water participates in this reaction as a bifunctional catalyst in a polar decomposition process to produce water and singlet oxygen (O(2), (1)delta(g)). The possibility that hydrogen peroxide is, besides water, also involved in the decomposition of hydrogen trioxide is also considered. The half-life of HOOOH at room temperature (20 degrees C) is 16 +/- 1 min in all solvents investigated. Using a variety of DFT methods (restricted, broken-symmetry unrestricted, self-interaction corrected) in connection with the B3LYP functional, a stepwise mechanism involving the hydrotrioxyl (HOOO(*)) radical is proposed for the ozonation of hydrazines (RNHNHR, R = H, Ph, Me) that involves the abstraction of the N-hydrogen atom by ozone to form a radical pair, RNNHR(*) (*)OOOH. The hydrotrioxyl radical can then either abstract the remaining N(H) hydrogen atom from the RNNHR(*) radical to form the corresponding diazene (RN=NR), or recombines with RNNHR(*) in a solvent cage to form the hydrotrioxide, RN(OOOH)NHR. The decomposition of these very labile hydrotrioxides involves the homolytic scission of the RO-OOH bond with subsequent "in cage" formation of the diazene-N-oxide and hydrogen peroxide. Although 1,2-diphenyldiazene is unreactive toward ozone under conditions investigated, 1,2-dimethyldiazene reacts with relative ease to yield 1,2-dimethyldiazene-N-oxide and singlet oxygen (O(2), (1)delta(g)). The subsequent reaction sequence between these two components to yield nitromethane as the final product is discussed. The formation of formic acid and nitromethane in the ozonolysis of 1,2-dimethylhydrazine is explained as being due to the abstraction of a methyl H atom of the CH(3)NNHCH(3)(*) radical by HOOO(*) in the solvent cage. The possible mechanism of the reaction of the initially formed formaldehyde methylhydrazone (and HOOOH) with ozone/oxygen mixtures to produce formic acid and nitromethane is also discussed.     

Analysis of Polymer Dynamics by NMR Modulated Gradient Spin Echo

NMR modulated gradient spin echo method, which allows the quantification of polymer segmental displacement via the measurement of the velocity autocorrelation, requires the formulation of theoretical predictions in the frequency domain in order to test their validity. We worked out the velocity autocorrelation spectrum of the segmental motion according to the Rouse and the tube/reptation model to compare it to the experimental results obtained by the new NMR technique. The analysis of polybutadiene shows the segmental velocity autocorrelation spectrum typical for the reptation-like motion of polymer in a “tube”. The measurement of bulk water indicates a kind of Rouse motion in a network of hydrogen bonds.     

Copositive and semidefinite relaxations of the quadratic assignment problem

Semidefinite relaxations of the quadratic assignment problem ($QAP$) have recently turned out to provide good approximations to the optimal value of $QAP$. We take a systematic look at various conic relaxations of $QAP$. We first show that $QAP$ can equivalently be formulated as a linear program over the cone of completely positive matrices. Since it is hard to optimize over this cone, we also look at tractable approximations and compare with several relaxations from the literature. We show that several of the well-studied models are in fact equivalent. It is still a challenging task to solve the strongest of these models to reasonable accuracy on instances of moderate size.     

Guanine alkylation by ethylene oxide: calculation of chemical reactivity

In this paper we report on calculations of the activation free energy for a chemical reaction between ethylene oxide and guanine. Ethylene oxide is biologically relevant per se and is also a model compound for numerous ultimate carcinogens. Calculations were performed on the medium-high ab initio, DFT, and semiempirical MO levels. Effects of solvation were considered using the Langevine dipole method and solvent reaction field method of Tomasi and co-workers. The calculated activation free energies are in reasonable agreement with the experimental value.     

Chemical reactivity as a tool to study carcinogenicity: reaction between chloroethylene oxide and guanine

Chloroethylene oxide, an ultimate carcinogen of vinyl chloride, reacts with DNA giving rise to 7-(2-oxyethyl)guanine adduct in a nearly quantitative yield. This reaction represents an initial step of carcinogenesis associated with vinyl chloride. From experimental data for this reaction we calculated the second-order rate constant of 0.049 s(-1) M(-1), which corresponds to the activation free energy of 19.5 kcal/mol. We also performed a series of medium high ab initio and density functional theory simulations. Effects of hydration were considered in the framework of the Langevine dipoles solvation model and the solvent reaction field method of Tomasi and co-workers. In silico calculated activation free energies are in a good agreement with the experimental value. This fact presents strong evidence in favor of the validity of the proposed reaction mechanism and points to the applicability of quantum-chemical methods to studies of other reactions associated with carcinogenesis. Insignificant stereoselectivity of the studied reaction was also predicted.     

Spin-labeled alkylphospholipids in a dipalmitoylphosphatidylcholine bilayer: molecular dynamics simulations

Molecular dynamics simulation has been performed to investigate the structural properties of perifosine and its synthetic spin-labeled alkylphospholipid analogues. The conformations adopted by these compounds in water and in a dipalmitoylphosphatidylcholine bilayer as a function of the presence and position of the N-oxyl-4',4'-dimethyloxazolidine ring (doxyl group) have been investigated by all-atom molecular dynamics. No predominant conformation was observed in water, but the molecules adopt specific orientations and conformations in the lipid bilayer. As is expected, alkyl chains tend to insert into the hydrophobic core, while charged groups stay at the lipid-water interface. A doxyl group in the middle of the alkyl chain moves up to the interface region, thus preventing adoption of the extended conformation. Compounds with a doxyl group close to the polar head group adopt conformations similar to that of unlabeled perifosine within the first nanoseconds of simulation. When the doxyl group is at the end of alkyl chain, the spin-labeled molecule needs more time to reach equilibrium. These results indicate a considerable effect of the doxyl position within the alkyl chain on its localization in the lipid bilayer and can be extended further to other similar spin probes used in the electron paramagnetic resonance spectroscopy of biological membranes.     

Aluminium speciation in environmental samples: a review

Because of its toxic effects on living beings, Al may represent an environmental hazard, particularly under increased acidic conditions. Growing environmental concern over the presence of increased Al concentrations in soil solutions and fresh waters resulted in the development of numerous analytical techniques for the determination of Al species. Al has a very complex chemistry that is significantly influenced by pH. Different Al species are present in environmental solutions, and many of them are unstable. Contamination of samples and reagents by extraneous Al represents an additional problem in speciation of Al at trace concentrations. Due to these reasons quantitative determination of particular chemical forms of Al is still a very difficult task for analytical chemists. The most important analytical methodologies of the last decade and new trends for the speciation of Al in environmental samples are comprehensively reviewed here.     

Wide diameter of Cartesian graph bundles

Fault tolerance and transmission delay of networks are important concepts in network design. The notions are strongly related to connectivity and diameter of a graph, and have been studied by many authors. Wide diameter of a graph combines studying connectivity with the diameter of a graph. Diameter with width k of a graph G, k-diameter, is defined as the minimum integer d for which there exist at least k internally disjoint paths of length at most d between any two distinct vertices in G. Denote by D_c(G) the c-diameter of G and κ(G) the connectivity of G. In the context of computer networks, wide diameters of Cartesian graph products have been recently studied by many authors. Cartesian graph bundles is a class of graphs that is a generalization of the Cartesian graph products. Let G be a Cartesian graph bundle with fiber F over base B, 0<a≤κ(F), and 0<b≤κ(B). We prove that D_a+b(G)≤D_a(F)+D_b(B)+1. Moreover, if G is a graph bundle with fiber F≠K₂ over base B≠K₂, then D_a+b(G)≤D_a(F)+D_b(B). The bounds are tight.     

DNA as a supramolecular scaffold for the helical arrangement of a stack of 1-ethynylpyrene chromophores

A highly organized helical pi-stacked arrangement of 1-ethynylpyrene moieties along the major groove of duplex DNA can only be achieved if more than three chromophores have been synthetically incorporated adjacent to each other.