Synthetic gene network for entraining and amplifying cellular oscillations

We present a model for a synthetic gene oscillator and consider the coupling of the oscillator to a periodic process that is intrinsic to the cell. We investigate the synchronization properties of the coupled system, and show how the oscillator can be constructed to yield a significant amplification of cellular oscillations. We reduce the driven oscillator equations to a normal form, and analytically determine the amplification as a function of the strength of the cellular oscillations. The ability to couple naturally occurring genetic oscillations to a synthetically designed network could lead to possible strategies for entraining and/or amplifying oscillations in cellular protein levels.     

Binary-black-hole encounters, gravitational bursts, and maximum final spin

The spin of the final black hole in the coalescence of nonspinning black holes is determined by the "residual" orbital angular momentum of the binary. This residual momentum consists of the orbital angular momentum that the binary is not able to shed in the process of merging. We study the angular momentum radiated, the spin of the final black hole, and the gravitational bursts in a sequence of equal mass encounters. The initial orbital configurations range from those producing an almost direct infall to others leading to numerous orbits before infall, with multiple bursts of radiation. Our sequence consists of orbits with fixed impact parameter. What varies is the initial linear momentum of the black holes. For this sequence, the final black hole of mass M_{h} gets a maximum spin parameter a/M_{h} approximately 0.823, with this maximum occurring for initial orbital angular momentum L/M_{h};{2} approximately 1.176.     

Competing ferromagnetism and superconductivity on FeAs layers in EuFe2(As0.73P0.27)2

We have measured the spin-polarized electron momentum density distributions of EuFe2(As0.73P0.27)2 by magnetic Compton scattering (MCS) measurements. For the first time, we show direct evidence of competing ferromagnetism and superconductivity (SC) on FeAs layers in this iron pnictide system. The MCS orbitalwise decomposition of the density distributions reveals that between 16 and 19 K, the spin-polarized Fe-3d character is enhanced (as the ferromagnetic character supersedes superconducting character), where the resistivity shows a maximum, reentrant SC-like peak, at 18 K. The spin polarization of the Fe-3d orbital, enhanced by ferromagnetic Eu ions, suppresses the SC around 18 K, while at other temperatures the system indeed exhibits SC where the Fe-3d spin polarization is suppressed or collapses.     

Reflection absorption infrared spectroscopy during atomic layer deposition of HfO2 films from tetrakis(ethylmethylamido)hafnium and water

Tetrakis(ethylmethylamido)hafnium and water are commonly used precursors for atomic layer deposition of HfO₂. Using reflection absorption infrared spectroscopy with a buried-metal-layer substrate, we probe surface species present during typical deposition conditions. We observe evidence for thermal decomposition of alkylamido ligands at 320 °C. Additionally, we find that complete saturation of the SiO₂ substrate occurs in the first cycle at ≈100 °C whereas incomplete coverage is apparent even after many cycles at higher temperatures. The use of this technique as an in situ diagnostic useful for process optimization is demonstrated.     

Ultra fine carbon nitride nanocrystals synthesized by laser ablation in liquid solution

Crystalline carbon nitride nanopowders and nanorods have been successfully synthesized at room temperature and pressure using the novel technique of pulsed laser ablation of a graphite target in liquid ammonia solution. High-resolution transmission electron microscopy (HRTEM), selected area electron diffraction (SAED), and Fourier transform infrared spectroscopy (FTIR) were used to systematically study the morphology, nanostructure and chemical bonding. The experimental composition and structure of the nanoparticles are consistent with the theoretical calculations for α-C₃N₄. After 2 h ablation the particles had a size distribution ∼8–12 nm, whereas after 5 h ablation the particles had grown into nanorod-like structures with a crystalline C₃N₄ tip. A formation mechanism for these nanorods is proposed whereby nanoparticles are first synthesized via rapid formation of an embryonic particle, followed by a slow growth, eventually leading to a one-dimensional nanorod structure.     

Representation of the anisotropic pseudo-potential for nematogens

A semiclassical molecular dynamics method based on the approximate variational solution of the time-dependent Schrödinger equation with gaussian wave packets [1–3] has been applied to the simulation of liquid, solid and gaseous neon. The technique is computationally stable: the wave packets do not spread and the conservation of energy is excellent. With a suitable choice of the pair potential fairly satisfactory agreement with the experimental energy and pressure is obtained. The radial distribution functions exaggerate the quantum-mechanical broadening effect. Diffusion constants are in fair agreement with experiment and lower than those of the classical Lennard-Jones liquid.     

The attention filter for tones in noise has the same shape and effective bandwidth in the elderly as it has in young listeners

Listeners asked to detect tones masked by noise hear frequent signals but miss infrequent probes, suggesting that they attend to spectral regions where they expect the signals to occur. The narrow detection pattern centered on the frequent target approximates that obtained in notched noise, indicating that attention is focused on the auditory filter. We measured attention bands in young and elderly listeners (n=5, 4; 20-25 and 62-82 years of age) for targets (800 or 1200 Hz) and infrequent probe signals (target +/-25-100 Hz) masked in wideband noise. We anticipated that their width would increase with age, as has been reported for auditory filters. A yes-no single-interval procedure provided detection probabilities and detection response speeds. Both measures showed near-linear declines with decreasing signal level, and graded decay functions as probe frequency deviated from the target frequency. Probes deviating from the target by 25 to 50 Hz were equivalent to a 2-dB reduction in signal level for both measures. The equivalent rectangular bandwidth (ERB) for detection approximated 11% of the signal frequency for each age group. Confidence intervals (95%) showed that the elderly ERB could be at most only about 20% larger than that of younger listeners.     

Nonuniform sampling and maximum entropy reconstruction applied to the accurate measurement of residual dipolar couplings

Residual dipolar couplings (RDC) provide important global restraints for accurate structure determination by NMR. We show that nonuniform sampling in combination with maximum entropy reconstruction (MaxEnt) is a promising strategy for accelerating and potentially enhancing the acquisition of RDC spectra. Using MaxEnt-processed spectra of nonuniformly sampled data sets that are reduced up to one fifth relative to uniform sampling, accurate 13C'-13Calpha RDCs can be obtained that agree with an RMS of 0.67 Hz with those derived from uniformly sampled, Fourier transformed spectra. While confirming that frequency errors in MaxEnt spectra are very slight, an unexpected class of systematic errors was found to occur in the 6th significant figure of 13C' chemical shifts of doublets obtained by MaxEnt reconstruction. We show that this error stems from slight line shape perturbations and predict it should be encountered in other nonlinear spectral estimation algorithms. In the case of MaxEnt reconstruction, the error can easily be rendered systematic by straightforward optimization of MaxEnt reconstruction parameters and self-cancels in obtaining RDCs from nonuniformly sampled, MaxEnt reconstructed spectra.