Complementary MS Methods Assist Conformational Characterization of Antibodies with Altered S–S Bonding Networks

As therapeutic monoclonal antibodies (mAbs) become a major focus in biotechnology and a source of the next-generation drugs, new analytical methods or combination methods are needed for monitoring changes in higher order structure and effects of post-translational modifications. The complexity of these molecules and their vulnerability to structural change provide a serious challenge. We describe here the use of complementary mass spectrometry methods that not only characterize mutant mAbs but also may provide a general framework for characterizing higher order structure of other protein therapeutics and biosimilars. To frame the challenge, we selected members of the IgG2 subclass that have distinct disulfide isomeric structures as a model to evaluate an overall approach that uses ion mobility, top-down MS sequencing, and protein footprinting in the form of fast photochemical oxidation of proteins (FPOP). These three methods are rapid, sensitive, respond to subtle changes in conformation of Cys?→?Ser mutants of an IgG2, each representing a single disulfide isoform, and may be used in series to probe higher order structure. The outcome suggests that this approach of using various methods in combination can assist the development and quality control of protein therapeutics.      

Synthesis and Characterization of Triphenylphosphine Oxide-Containing Poly(Aryl Imide)-Poly(Dimethyl Siloxane) Randomly Segmented Copolymers

Abstract

Poly(aryl imide)-poly(dimethyl siloxane) randomly segmented copolymers were synthesized by essentially a one-step solution imidization process in a solvent system consisting of predominately o-dichlorobenzene with a small amount of n-methylpyrolidone. This solvent combination was selected because of its ability to afford homogeneous solutions throughout the polymerization process. This enabled copolymers of any desired poly(dimethyl siloxane) composition to be prepared. A hydrolytically stable triphenylphosphine oxide containing diamine, bis(3-amino-phenoxy-4′-phenyl)phenylphosphine oxide, was utilized as a chain extender and together with oxydiphthalic anhydride formed the hard segment in these copolymers. The soft segment was formed from α,ω-aminopropyl poly(dimethyl siloxane) oligomers of controlled molecular weight. The presence of phosphorus and silicon contributes several unique properties to the system, including enhanced solubility, thermal stability, and flame resistance. High molecular weight copolymers containing up to 60% (w/w) of the poly(dimethyl siloxane) segments were successfully prepared using this method. Gel permeation chromatography analysis, based on a universal calibration curve in CHCl₃, was performed to determine the molecular weights and distribution. These copolymers with 40-60% (w/w) poly(dimethyl siloxane) exhibited upper T_g values ranging from 130 to 180°C and showed substantial char yields at 750°C in air, which increased with siloxane content. Dynamic mechanical analysis confirmed the anticipated microphase behavior by the presence of two separate glass-transition regions. Both small angle x-ray scattering and transmission electron microscopy measurements determined on well-characterized transparent cast films were used to better demonstrate the multiphase nature of these copolymers.     

Radiation Degradation of Poly(olefin Sulfone)s: A Volatile Product Study

The predominant degradation reaction in the γ-irradiation of nine poly(olefin sulfone)s was found to be C-S bond scission with elimination of SO₂ and olefin. The extent of depolymerization, measured by the yields of the two comonomers, increased over five irradiation temperatures from 0 to 150° C and could be correlated with the ceiling temperature. Thus G (total volatile products) increased from 10 to 10,000 over this temperature range. Minor radiolysis products included the alkanes corresponding to (1) loss of the side chain group and (2) scavenging of the side chain radical by monomer olefin. There was a deficiency of olefin relative to SO₂, except at high temperatures, and isomerization of the product olefin in some cases. These observations are attributed to reactions of radiation-induced polymeric cations.     

Synthesis of Conjugated Optically Active Polymetallocenes

The development of methodology for synthesizing new materials in which metal atoms are linked by hydrocarbons whose electronic conjugation is unbroken is described. The fundamental idea is to twist the hydrocarbons into helices. By attaching bulky groups to their precursors, the helices can be made to twist mainly in one direction. The molecules synthesized are helicenes capped by five-membered rings to which metals are attached. If the size of the helix is chosen appropriately, a polymeric structure forms in which hydrocarbon rings and metal atoms alternate. An oligomer with Structure 22 is the first such material prepared. It and related structures might be precursors of molecular solenoids, examples of which are not yet known.     

Supramolecular assembly of lysine-b-glycine block copolypeptides at different solution conditions

Here we report the supramolecular assembly of poly(l-lysine)-b-polyglycine diblock copolypeptides at different solution conditions. Light scattering and confocal microscopy indicate that the supramolecular aggregates initially formed in solution are vesicles with a broad size distribution, depending strongly on the initial processing conditions. The vesicles formed after multiple pH cycles appear independent of the initial processing conditions and are related to the thermodynamic nature of the assembled supramolecular aggregates. Circular dichroism results verify that this change in size observed over pH cyclings tracks with the conformation changes of the lysine block confined in the vesicle membranes. This appears interesting for peptosome-based materials, implying a high level of fluidity in the membrane that allows the supramolecular aggregates formed in solution to respond to changes in pH. The results also show that the external stimulus, which is the change of pH in this study, provides an additional means to regulate polypeptide vesicle size and size distribution.     

Interaction of PH3 with acetaldehyde in aqueous media and chemistry of [HO(Me)CH]4PCl

The known phosphonium chloride [HO(Me)CH]₄PCl was prepared at ambient conditions from PH₃ and acetaldehyde in aqueous HCl, and characterized by elemental analysis and ¹H and ³¹{¹H} NMR spectroscopy. Attempts to obtain the tertiary phosphine [HO(Me)CH]₃P via reaction of [HO(Me)CH]₄PCl with Na₂SO₃ or Et₃N in aqueous media under Ar revealed that [HO(Me)CH]₃P is unstable and equilibrates with the secondary phosphine [HO(Me)CH]₂PH and acetaldehyde. A 1:4 reaction of [HO(Me)CH]₄PCl with NaHSO₃ at room temperature under Ar affords first the oxide [HO(Me)CH]₂P(O)H and then the phosphinic acid [HO(Me)CH]₂P(O)OH. A 1:1 reaction of [HO(Me)CH]₄PCl with Na₂S₂O₃ affords the sulfide [HO(Me)CH]₃PS. ³¹{¹H} and ¹H NMR data for all the (α-hydroxyethyl)phosphorus species are reported for the first time.     

Profiling primaquine metabolites in primary human hepatocytes using UHPLC‐QTOF‐MS with 13C stable isotope labeling

Therapeutic efficiency and hemolytic toxicity of primaquine (PQ), the only drug available for radical cure of relapsing vivax malaria are believed to be mediated by its metabolites. However, identification of these metabolites has remained a major challenge apparently due to low quantities and their reactive nature. Drug candidates labeled with stable isotopes afford convenient tools for tracking drug‐derived metabolites in complex matrices by liquid chromatography‐tandem mass spectrometry (LC‐MS‐MS) and filtering for masses with twin peaks attributable to the label. This study was undertaken to identify metabolites of PQ from an in vitro incubation of a 1:1 w/w mixture of ¹³C₆‐PQ/PQ with primary human hepatocytes. Acquity ultra‐performance LC (UHPLC) was integrated with QTOF‐MS to combine the efficiency of separation with high sensitivity, selectivity of detection and accurate mass determination. UHPLC retention time, twin mass peaks with difference of 6 (originating from ¹³C₆‐PQ/PQ), and MS‐MS fragmentation pattern were used for phenotyping. Besides carboxy‐PQ (cPQ), formed by oxidative deamination of PQ to an aldehyde and subsequent oxidation, several other metabolites were identified: including PQ alcohol, predictably generated by oxidative deamination of PQ to an aldehyde and subsequent reduction, its acetate and the alcohol's glucuronide conjugate. Trace amounts of quinone‐imine metabolites of PQ and cPQ were also detected which may be generated by hydroxylation of the PQ/cPQ quinoline ring at the 5‐position and subsequent oxidation. These findings shed additional light on the human hepatic metabolism of PQ, and the method can be applied for identification of reactive PQ metabolites generated in vivo in preclinical and clinical studies. Copyright © 2013 John Wiley & Sons, Ltd.     

Correlations of ion structure with multiple fragmentation pathways arising from collision‐induced dissociations of selected α‐hydroxycarboxylic acid anions

Under conditions of collision‐induced dissociation (CID), anions of α‐hydroxycarboxylic acids usually fragment to yield the distinctive hydroxycarbonyl anion (m/z 45) and/or the complementary product anion formed by neutral loss of formic acid (46 u). Further support for the known two‐step mechanism, involving an ion‐neutral complex for the formation of the hydroxycarbonyl anion from the carboxyl group, is herein provided by tandem mass spectrometric results and density functional theory computations on the glycolate, lactate and 3‐phenyllactate ions. A fourth, structurally related α‐hydroxycarboxylate ion, obtained by deprotonation of mandelic acid, showed only loss of carbon dioxide upon CID. Density functional theory computations on the mandelate ion indicated that similar energy inputs were required for a direct, phenyl‐assisted decarboxylation and a postulated novel rearrangement to a carbonate ester, which yielded the benzyl oxide ion upon loss of CO₂. Rearrangement of the glycolate ion led to expulsion of carbon monoxide, whereas the 3‐phenyllactate ion showed the loss of water and formation of the benzyl anion and the benzyl radical as competing processes. The fragmentation pathways proposed for lactate and 3‐phenyllactate are supported by isotopic labeling. The relative computed energies of saddle points and product ions for all proposed fragmentation pathways are consistent with the energies supplied during CID experiments and the observed relative intensities of product ions. The diverse reaction pathways characterized for this set of four α‐hydroxycarboxylate ions demonstrate that it is crucial to understand the effects of structural variations when attempting to predict the gas‐phase reactivity and CID spectra of carboxylate ions. Copyright © 2013 John Wiley & Sons, Ltd.