Intramolecular and intermolecular OH…O and OH…F interactions in perfluoropolyethers with polar end groups: IR spectroscopy and first-principles calculations

Perfluoropolyether (PFPE) fluids constitute a class of polymers that fulfil a wide range of requirements for hi-tech applications, due to their pefluorinated backbone. For some of these applications they are requested to bear polar end groups, and the combination of a chemical inert backbone and a reactive end group can produce peculiar conformations and supramolecular structures. The molecular structure and the vibrational properties of the ethoxyl-terminated PFPE FLUOROLINK®E10H in solution are here investigated by means of IR spectroscopy. It is shown that the complex spectral features of the OH-stretching region cannot be explained without a thorough computational study, involving the investigation of the conformational space of an isolated model molecule by means of semiempirical AM1 calculations and DFT calculations. The most relevant conformers were singled out, showing a high degree of conformational disorder for FLUOROLINK®E10H. Furthermore, it is shown that intra- and intermolecular H-bonding affects significantly the molecular structure and the vibrational spectrum. Several interactions are shown to be relevant, such as OH^…F interactions and complexes with residual water. Theoretical values of the absolute intensities of OH stretching IR bands, relevant for the analytical applications, are obtained.     

Polystyrene Microspheres and Nanospheres Produced by Electrospray

Summary: Polystyrene (PS) micro‐ and nanospheres with uniform dimensions and smooth surfaces have been produced by electrospray. The effect of PS molecular weight on beads morphology and the fundamental role of concentration have been investigated. Moreover, a new apparatus was designed to collect the polymer spheres during the process and to prevent the coalescence among the spheres.

PS micro‐ and nanospheres produced by electrospray     

Development of Non-Hydrolysable Oligosaccharide Activity-Based Inactivators for Endoglycanases: A Case Study on α-1,6 Mannanases

There is a vast genomic resource for enzymes active on carbohydrates. Lagging far behind, however, are functional chemical tools for the rapid characterization of carbohydrate-active enzymes. Activity-based probes (ABPs) offer one chemical solution to these issues with ABPs based upon cyclophellitol epoxide and aziridine covalent and irreversible inhibitors representing a potent and widespread approach. Such inhibitors for enzymes active on polysaccharides are potentially limited by the requirement for several glycosidic bonds, themselves substrates for the enzyme targets. Here, it is shown that non-hydrolysable trisaccharide can be synthesized and applied even to enzymes with challenging subsite requirements. It was found that incorporation of carbasugar moieties, which was accomplished by cuprate-assisted regioselective trans-diaxial epoxide opening of carba-mannal synthesised for this purpose, yields inactivators that act as powerful activity-based inhibitors for α-1,6 endo-mannanases. 3-D structures at 1.35–1.47 Å resolutions confirm the design rationale and binding to the enzymatic nucleophile. Carbasugar oligosaccharide cyclophellitols offer a powerful new approach for the design of robust endoglycosidase inhibitors, while the synthesis procedures presented here should allow adaptation towards activity-based endoglycosidase probes as well as configurational isosteres targeting other endoglycosidase families.     

Rational Design of Fe2(μ-PR2)2(L)6 Coordination Compounds Featuring Tailored Potential Inversion

It was recently discovered that some redox proteins can thermodynamically and spatially split two incoming electrons towards different pathways, resulting in the one-electron reduction of two different substrates, featuring reduction potential respectively higher and lower than the parent reductant. This energy conversion process, referred to as electron bifurcation, is relevant not only from a biochemical perspective, but also for the ground-breaking applications that electron-bifurcating molecular devices could have in the field of energy conversion. Natural electron-bifurcating systems contain a two-electron redox centre featuring potential inversion (PI), i. e. with second reduction easier than the first. With the aim of revealing key factors to tailor the span between first and second redox potentials, we performed a systematic density functional study of a 26-molecule set of models with the general formula Fe₂(μ-PR₂)₂(L)₆. It turned out that specific features such as i) a Fe−Fe antibonding character of the LUMO, ii) presence of electron-donor groups and iii) low steric congestion in the Fe's coordination sphere, are key ingredients for PI. In particular, the synergic effects of i)-iii) can lead to a span between first and second redox potentials larger than 700 mV. More generally, the “molecular recipes” herein described are expected to inspire the synthesis of Fe₂P₂ systems with tailored PI, of primary relevance to the design of electron-bifurcating molecular devices.     

On the conformation of bipyridine dications and cation radicals

Ab initio STO-3G calculations with partial geometry optimization were performed to determine the conformational structure of 2,2′- and 4,4′-bipyridine dications and their cation radicals. The results suggest a considerably twisted conformation for the dications, whereas the corresponding radical cations are nearly planar. Reasons for the structure differences are discussed and related to the herbicidal action of these compounds.     

Synthesis and Characterization of the β-BaB2O4 Phase Obtained by the Polymeric Precursor Method

A modified polymeric precursor method based on the Pechini process was used to synthesize -BaB₂O₄ (-BBO) crystalline phase. D-sorbitol (C₆H₁₄O₆) was used as a polymerizing agent to avoid the loss of boron during the samples' calcination and crystallization. The -BBO stoichiometric crystalline phase was only obtained when sorbitol was added to the solution. The results of Raman spectroscopy show that the amorphous phase is only completely eliminated when the samples are heat-treated at 750°C for 20 h. Thin films of -BBO phase displaying a preferred orientation were obtained when crystallized at 750°C for 2 h and deposited on sapphire substrate.     

An analysis of the interaction energy in some SN2 reactions

The interaction energy between an incoming group X^– and the substrate CRH₂Y at the geometry of the transition state (TS) for bimolecular nucleophilic substitution reactions (with X, Y, and R equal to H and F) has been subjected to decomposition according to the Morokuma scheme. The influence of the basis set and of the geometry chosen for the TS is examined. The results bring out regular trends in the different terms of the decomposition along the whole set of reactions, but they are not sufficient to give a rationale of the energetic factors involved in these reactions.     

Contracted and uncontracted oscillator orbitals in CI calculations on two electron systems

Oscillator orbitals as expansion functions for the correlation holes have been checked by using them in two simple two electron systems, H₂ and Li⁺.A contraction of the oscillators has been introduced and proved useful to ameliorate energy and convergence rate.

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Zusammenfassung Oszillatororbitale als Entwicklungsfunktion zur Darstellung des Korrelationsloches werden durch Anwendung bei zwei einfachen Zweielektronensystemen H₂ und Li⁺ geprüft. Eine Kontraktion der Oszillatoren wird eingeführt, welche die Energie und die Konvergenzgeschwindigkeit verbessert.

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Résumé Essai d'orbitales oscillantes comme fonctions de base pour les trous de corrélation dans deux systèmes biélectroniques simples: H₂ et Li⁺.L'introduction d'une contraction des ces orbitales s'est avérée utile pour améliorer l'énergie et la vitesse de convergence.

     

The protonation of three-membered ring molecules Theab initio SCF versus the electrostatic picture of the proton approach

The protonation processes for eight three-membered ring molecules have been investigated using the SCF LCAO MO method with Gaussian basis sets and the results are compared with those obtained at the first order approximation, i.e. the electrostatic approximation. The electrostatic results are linearly connected with the SCF ones and are sufficient to get an ordering of the protonation energies in different chemical sites and to obtain reliable representations of the proton approaching paths.