Enhancement of deoxyribonucleic acid microarray performance using post-hybridization signal amplification

Microarray performance depends upon the ability to screen samples against a vast array of probes with the appropriate sensitivity and selectivity. While these factors are significantly influenced by probe design, they are also subject to the particular detection methodology and reagents employed. Herein we describe the incorporation of super avidin-biotin system (SABS) and secondary enzymatic enhancement (SEE) as post-hybridization signal amplification techniques to improve the sensitivity of oligonucleotide microarrays. To these ends, we tested these methods on electrochemically interrogated arrays using both purified influenza A PCR products and randomly amplified genomic Francisella tularensis DNA as targets. While SABS treatment did not improve sensitivity for CombiMatrix ElectraSense(?) arrays using purified influenza A cDNA, chip sensitivity was improved 10-fold for randomly amplified targets. SEE improved performance to a greater degree and was able to lower the detection limits 10-fold for influenza A and 100-fold for F. tularensis DNA. These results indicate the promising capability of post-hybridization amplification techniques for enhancing microarray performance.     

Implications of deformation and shape coexistence for the nuclear shell model

The successes of the nuclear shell model in explaining the stability properties of magic nuclei are challenged by the observation of rotational bands for which the sequential filling of single-particle energy levels of the spherical shell model are not respected. This Letter proposes criteria for identifying the shell-model configurations appropriate for describing such bands of states.     

Potential polymorphs of aspirin

Aspirin is only found experimentally in one crystal structure. In this article, the method of Karfunkel and Gdanitz is used to predict potential polymorphs of aspirin. The known structure, containing a nonplanar conformer is found, along with a number of other low energy structures, many of which are based on a planar conformer. Semiempirical and ab initio calculations show that the planar conformer is less stable than the experimentally known one. Force field calculations suggest that the planar conformer is more stable. The lattice energy of the experimentally known crystal structure is 1.4 kcal/mol lower than any of the potential crystal structures, even though there are a number of structures with lower total (lattice+intramolecular) energies. Conformational maps indicate that another stable conformation occurs within a few kilocalories per mole of the known structure. Polymorphs are predicted for this conformer, but it is found to pack poorly. It is proposed that routes to producing polymorphs of aspirin might be found if consideration is given to promoting the stability of the planar conformer with appropriate solvents or additives. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 262–273, 1999     

The O(6) description of the nuclear rotation

A recently developed algebraic version of the collective model has shown that a full range of Bohr model calculations can be executed in bases that range continuously from those of a spherical vibrator to a beta-vibrational Wilets-Jean limit. Thus, the establishment of close relationships between the algebraic structure of this model and the IBM is of special importance because one can learn from the complementary perspectives they afford. In this paper, we show by calculations that the familiar rotor-gamma vibrational spectra of the Bohr model can be obtained in the IBM by the addition of a scalar cubic in the quadrupole moment operators, of the type considered recently by Van Isacker, to an O(6) Hamiltonian. Simple fits of the low-lying spectra, electromagnetic transition rates and moments of inertia of the ground and gamma bands of¹⁶²Dy and¹⁶⁸Er are presented.