Crystal Structure and Solid State 13C Nmr Analysis of Methyl 3,4,6-Tri-O-Acetyl-2-Deoxy-2-(3-Phenylureido)-β-D-Glucopyranoside

ABSTRACT

The X-ray diffraction analysis of methyl 3,4,6-tri-O-acetyl-2-deoxy-(3-phenylureido)-β-D-glucopyranoside was performed and showed that the molecules are associated by two NHz.O=C hydrogen bonds. One molecule with disorder of an acetyl group at C-4 was found in the asymmetric crystal unit. The signals in ¹³C CPMAS NMR spectrum are duplicated indicating that local symmetry is lower than those of the crystal.     

Changes in surface composition of Fe-Si-Cr-K oxide alkylation catalyst: the marked role of potassium ferrites

The influence of gas-phase methylation of phenol on the state of the Fe-Si-Cr-K oxide catalyst surface was investigated by thermodesorption of K atoms and ions. Changes in potassium desorption energies, as determined from Arrhenius-like plots, varied from 3.07 eV to 1.21 eV for the atoms and from 2.59 eV to 2.89 eV for ion desorption from the active and deactivated samples, respectively. The results were discussed in terms of transformation of the catalyst surface and formation of β-ferrite.     

A polymorphic pocket at the P10 position contributes to peptide binding specificity in class II MHC proteins

Peptides bind to class II major histocompatibility complex (MHC) proteins in an extended conformation. Pockets in the peptide binding site spaced to accommodate peptide side chains at the P1, P4, P6, and P9 positions have been previously characterized and help to explain the obtained peptide binding specificity. However, two peptides differing only at P10 have significantly different binding affinities for HLA-DR1. The structure of HLA-DR1 in complex with the tighter binding peptide shows that the peptide binds in the usual polyproline type II conformation, but with the P10 residue accommodated in a shallow pocket at the end of the binding groove. HLA-DR1 variants with polymorphic residues at these positions were produced and found to exhibit different side chain specificity at the P10 position. These results define a new specificity position in HLA-DR proteins.     

Thermal Analysis of Cobalt(II) Salts with some Carboxylic Acids

The thermal analysis of CoC₂O₄·2H₂O, Co(HCOO)₂·2H₂O and Co(CH₃COO)₂·4H₂O was carried out with simultaneous TG-DTG-DTA measurements under non-isothermal conditions in air and argon atmospheres. The intermediates and the end products of decomposition were characterised by X-ray diffraction and IR and UV-VIS spectroscopy. The decomposition of the studied compounds occur in several stages. The first stage of dissociation of each compound is dehydration both in air and argon. The next stages differ in air and argon. The final product of the decomposition of each compound in air is Co₃O₄. In argon it is a mixture of Co and CoO for cobalt(II) oxalate and cobalt(II) formate but CoO for cobalt(II) acetate. This revised version was published online in August 2006 with corrections to the Cover Date.     

Interaction with glycine increases stability of a mutagenic tautomer of uracil. A density functional theory study

The most stable structures for the gas-phase complexes of minor tautomers of uracil (U) with glycine (G) were characterized at the density functional B3LYP/6-31++G level of theory. These are cyclic structures stabilized by two hydrogen bonds. The relative stability of isolated tautomers of uracil was rationalized by using thermodynamic and structural arguments. The stabilization energies for complexes between the tautomers of U and G result from interplay between the stabilizing two-body interaction energies and destabilizing one-body terms. The latter are related to the energies of (i) tautomerization of the unperturbed moieties and (ii) distortions of the resulting rare tautomers in the complex. The two-body term describes the interaction energy between distorted tautomers. The two-body interaction energy term correlates with perturbations of length of the proton-donor bonds as well as with deprotonation enthalpies and proton affinities of the appropriate monomer sites. It was demonstrated that the relative instability of rare tautomers of uracil is diminished due to their interactions with glycine. In particular, the instability of the third most stable tautomer (U(III)) is decreased from 11.9 kcal/mol for non-interacting uracil to 6.7 kcal/mol for uracil in a complex with the zwitterionic tautomer of glycine. A decrease of instability by 5.2 kcal/mol could result in an increase of concentration of U(III) by almost 5 orders of magnitude. This is the tautomer with proton donor and acceptor sites matching guanine rather than adenine. Moreover, kinetic characteristics obtained for the glycine-assisted conversion of the most stable tautomer of uracil (U(I)) to U(III) indicate that the U(I)<-->U(III) thermodynamic equilibrium could be easily attained at room temperature. The resulting concentration of this tautomer falls in a mutationally significant range.     

Flow injection chemiluminescence determination of the total phenolics levels in plant-derived beverages using soluble manganese(IV)

This study established a flow injection (FI) methodology for the determination of the total phenolic content in plant-derived beverages based on soluble manganese(IV) chemiluminescence (CL) detection. It was found that mixing polyphenols with acidic soluble manganese(IV) in the presence of formaldehyde evoked chemiluminescence. Based on this finding, a new FI-CL method was developed for the estimation of the total content of phenolic compounds (expressed as milligrams of gallic acid equivalent per litre of drink) in a variety of wine, tea and fruit juice samples. The proposed method is sensitive with a detection limit of 0.02 ng mL⁻¹ (gallic acid), offers a wide linear dynamic range (0.5-400 ng mL⁻¹) and high sample throughput (247 samples h⁻¹). The relative standard deviation for 15 measurements was 3.8% for 2 ng mL⁻¹ and 0.45% for 10 ng mL⁻¹ of gallic acid. Analysis of 36 different samples showed that the results obtained by the proposed FI-CL method correlate highly with those obtained by spectrophotometric methods commonly used for the evaluation of the total phenolic/antioxidant level. However, the FI-CL method was found to be far simpler, more rapid and selective, with almost no interference from non-phenolic components of the samples examined.     

Fluoride-selective polymeric membrane electrodes based on Zr(IV)- and Al(III)-salen ionophores of various structures

Al(III)- and Zr(IV)-salophens of novel structures were tested as anion-selective ionophores. It was shown that these compounds are highly selective to fluoride and give selectivity greatly deviating from classical Hofmeister pattern, when doped into the polymeric membrane of ion-selective electrode (ISE). The following selectivity sequence has been recorded for both ionophores: F⁻ > ClO₄⁻ > SCN⁻ > NO₃⁻ ≈ Br⁻ ≈ Cl⁻. The results of potentiometric and spectrophotometric measurements allow to conclude that the nature and structure of salophen ligands influence stability of ISE working parameters. An increase in salophen ligands lipophilicity results in prolongation of the ISE lifetime, most likely due to slower ionophore decomposition caused by the hydrolysis of imine bonds in salophen structure. Ion-selective electrodes (ISEs) with the most successful Al(III)-salophen exhibited a stable, fast and near-Nernstian fluoride response and a functional lifetime near 3 weeks and selectivity coefficients with as follows: −2.8 (Y⁻ = Br⁻), −2.7 (Cl⁻), −2.8 (NO₃⁻), −1.5 (SCN⁻), −1.3 (ClO₄⁻), which is better than for other ones based on Zr(IV)- and Al(III)-salophens and salens described to date.     

Spectrochemical properties and solvatochromism of bis(salicylidene-2-amino-3-methylpyridine)copper(II)

The title complex, denoted as [Cu(Msap)₂], is a deep brown solid soluble in common solvents like chloroform, toluene, benzene, dioxane, acetone, methanol, ethanol, 2-propanol, dimethylformamide, dimethyl sulfoxide, and acetonitrile that is a necessary condition for solvatochromism observation. The complex has been characterized by elemental analysis, molar conductivity, ultraviolet, and visible spectroscopy. The available X-ray data for similar compounds show that copper atom adopts planar coordination geometry. The molar conductivities indicate their non-electrolytic properties. The electronic spectra have been used to study the coordination properties of donor atoms and their bonding abilities, as well as solvatochromism. The results obtained show that the interactions of metal with donors depend on solvent polarity and the color changes are subtle.