Acetylcholinesterase complexed with bivalent ligands related to huperzine a: experimental evidence for species-dependent protein-ligand complementarity

Acetylcholinesterase (AChE) inhibitors improve the cognitive abilities of Alzheimer patients. (-)-Huperzine A [(-)-HupA], an alkaloid isolated from the club moss, Huperzia serrata, is one such inhibitor, but the search for more potent and selective drugs continues. Recently, alkylene-linked dimers of 5-amino-5,6,7,8-tetrahydroquinolinone (hupyridone, 1a), a fragment of HupA, were shown to serve as more potent inhibitors of AChE than (-)-HupA and monomeric 1a. We soaked two such dimers, (S,S)-(-)-bis(10)-hupyridone [(S,S)-(-)-2a] and (S,S)-(-)-bis(12)-hupyridone [(S,S)-(-)-2b] containing, respectively, 10 and 12 methylenes in the spacer, into trigonal TcAChE crystals, and solved the X-ray structures of the resulting complexes using the difference Fourier technique, both to 2.15 A resolution. The structures revealed one HupA-like 1a unit bound to the "anionic" subsite of the active-site, near the bottom of the active-site gorge, adjacent to Trp84, as seen for the TcAChE/(-)-HupA complex, and the second 1a unit near Trp279 in the "peripheral" anionic site at the top of the gorge, both bivalent molecules thus spanning the active-site gorge. The results confirm that the increased affinity of the dimeric HupA analogues for AChE is conferred by binding to the two "anionic" sites of the enzyme. Inhibition data show that (-)-2a binds to TcAChE approximately 6-7- and > 170-fold more tightly than (-)-2b and (-)-HupA, respectively. In contrast, previous data for rat AChE show that (-)-2b binds approximately 3- and approximately 2-fold more tightly than (-)-2a and (-)-HupA, respectively. Structural comparison of TcAChE with rat AChE, as represented by the closely related mouse AChE structure (1maa.pdb), reveals a narrower gorge for rat AChE, a perpendicular alignment of the Tyr337 ring to the gorge axis, and its conformational rigidity, as a result of hydrogen bonding between its hydroxyl group and that of Tyr341, relative to TcAChE Phe330. These structural differences in the active-site gorge explain the switch in inhibitory potency of (-)-2a and 2b and the larger dimer/(-)-HupA potency ratios observed for TcAChE relative to rat AChE. The results offer new insights into factors affecting protein-ligand complementarity within the gorge and should assist the further development of improved AChE inhibitors.     

Stopped-flow injection analysis. The influence of diffusion on dispersion of normal and reverse flow injection

A relationship is derived to enable the comparison of the dispersion heights of normal and reverse flow injection analysis (FIA). A single channel flow system is employed in the absence of a chemical reaction. The stopped-flow injection method is used to probe the influence of molecular diffusion on the overall dispersion of normal and reverse FIA, which appeared to demonstrate fundamentally different diffusion behaviors. Small discrepancies are observed between the dispersion heights, which are enhanced by the stopped-flow period, especially when unmatched matrix ionic compositions of the indicator and counter solutions were involved. For these conditions, the diffusion flux rate is enhanced considerably, displaying a peak, in addition to the transient, for both methods. The influence of diffusion on the dispersion characteristics of normal and reverse FIA is discussed theoretically. Diffusion in the proposed model is postulated to oppose dispersion by convection. The latter initiates concentration gradients in the injection zone and propagates it with flow time over the dispersion zone profile. The diffusion flux then reacts in order to confine the indicator dispersion for normal FIA and to enhance it for reverse FIA. This model is consistent with the experimental results and accounts for most of the phenomena encountered. Probably owing to the influence of secondary flow phenomena, the use of coiled tubes has suppressed the effects of diffusion on the overall dispersion behavior.Part of the experimental work was performed at IMI Institute for Research and Development, Haifa, Israel.     

Versatile organic (fullerene)-inorganic (CdTe nanoparticle) nanoensembles

Novel organic (positively charged fullerene)-inorganic (negatively charged CdTe nanoparticle) nanoensembles were devised through electrostatic interactions and probed as versatile donor-acceptor hybrids. Photoirradiation of their homogeneous solutions, containing the electrostatically packed components, let to very long-lived (1.3 ms) charge separated states.     

Vanadium(V) environments in bismuth vanadates: A structural investigation using Raman spectroscopy and solid state V NMR

The Bi₂O₃---V₂O₅ system was examined using Raman spectroscopy and solid state ⁵¹V wideline, magic-angle spinning (MAS), and nutation NMR spectroscopy. The methods are shown to be complementary in the identification of the various phases and in the characterization of their vanadium site symmetries. Most of the compositions examined (1:1 ≤ Bi:V ≤ 60:1) are multiphasic. Depending on the Bi:V ratio, the following phases have been identified: BiVO₄, Bi₄V₂O₁₁, a triclinic type-II phase, a cubic type-I phase, γ-Bi₂O₃ doped with V(V) (sillenite), and β-Bi₂O₃. Detailed spectroscopic characterization reveals that vanadium is tetrahedrally coordinated in all these compounds, and that the degree of symmetry increases with increasing Bi:V ratio. At the highest Bi:V ratios, the combined interpretation of the Raman and NMR data provides strong evidence for the presence of Bi⁵⁺O₄ tetrahedra.     

Study of the ESI-mass spectrometry ionization mechanism of Fischer carbene complexes

By means of deuterium-labeling experiments, we have carried out a systematic ESI-MS study to determine the mechanism of ESI ionization of alkenyl and alkynyl group 6 Fischer carbene complexes. These compounds can be ionized under ESI conditions only in the presence of additives such as hydroquinone (HQ) or tetrathiafulvalene (TTF). Our results demonstrate that in the ESI source an anion-radical is formed after the initial HQ- or TTF-mediated electron transfer to the metallic carbene complex. For alkenyl carbene complexes, this species evolves by extrusion of a hydrogen radical to form an allenylchromium anion that is detected as the [M - H](-) ion in the mass spectrum. The preference for this mechanistic pathway could be rationalized by DFT calculations. In the case of alkynyl carbene complexes, experiments combining deuterated substrate, additive, and solvent demonstrate that the previously proposed allene-anion carbene complex is not formed. Instead, the H transfer from the ethoxy group in the anion radical, followed by extrusion of a hydrogen radical, leads to an allenyl anion that is detected in the ESI-MS as [M - H - CO](-).     

Determination of the chemical nature of active surface sites present on bulk mixed metal oxide catalysts

CH3OH temperature programmed surface reaction (TPSR) spectroscopy was employed to determine the chemical nature of active surface sites for bulk mixed metal oxide catalysts. The CH3OH-TPSR spectra peak temperature, Tp, for model supported metal oxides and bulk, pure metal oxides was found to be sensitive to the specific surface metal oxide as well as its oxidation state. The catalytic activity of the surface metal oxide sites was found to decrease upon reduction of these sites and the most active surface sites were the fully oxidized surface cations. The surface V5+ sites were found to be more active than the surface Mo6+ sites, which in turn were significantly more active than the surface Nb5+ and Te4+ sites. Furthermore, the reaction products formed also reflected the chemical nature of surface active sites. Surface redox sites are able to liberate oxygen and yield H2CO, while surface acidic sites are not able to liberate oxygen, contain either H+ or oxygen vacancies, and produce CH3OCH3. Surface V5+, Mo6+, and Te4+ sites behave as redox sites, and surface Nb5+ sites are Lewis acid sites. This experimental information was used to determine the chemical nature of the different surface cations in bulk Mo-V-Te-Nb-Ox mixed oxide catalysts (Mo(0.6)V(1.5)Ox, Mo(1.0)V(0.5)Te(0.16)Ox, Mo(1.0)V(0.3)Te(0.16)Nb(0.12)Ox). The bulk Mo(0.6)V(1.5)Ox and Mo(1.0)V(0.5)Te(0.16)Ox mixed oxide catalytic characteristics were dominated by the catalytic properties of the surface V5+ redox sites. The surface enrichment of these bulk mixed oxide by surface V5+ is related to its high mobility, V5+ possesses the lowest Tammann temperature among the different oxide cations, and the lower surface free energy associated with the surface termination of V=O bonds. The quaternary bulk Mo(1.0)V(0.3)Te(0.16)Nb(0.12)Ox mixed oxide possessed both surface redox and acidic sites. The surface redox sites reflect the characteristics of surface V5+ and the surface acidic sites reflect the properties normally associated with supported Mo6+. The major roles of Nb5+ and Te4+ appear to be that of ligand promoters for the more active surface V and Mo sites. These reactivity trends for CH3OH ODH parallel the reactivity trends of propane ODH because of their similar rate-determining step involving cleavage of a C-H bond. This novel CH3OH-TPSR spectroscopic method is a universal method that has also been successfully applied to other bulk mixed metal oxide systems to determine the chemical nature of the active surface sites.     

The Adsorption of Polyvinylpyrrolidone on Kaolinite Saturated with Sodium Chloride

The adsorption of two different molecular weights of polyvinylpyrrolidone (PVP) (M(w)=44,000 and M(w)=360,000 g mol(-1)) from water on kaolinite saturated with sodium chloride has been studied. The adsorption of PVP increases slowly as temperature increases. The adsorption of PVP on the kaolinite was studied by considering Fourier transform infrared (FTIR) spectra, X-ray diffraction patterns, and dielectric constants. During the adsorption process, PVP interacts with saturating sodium cations and possibly forces some of them onto the edges of the kaolinite; thus, the dielectric constant of saturated kaolinite is reduced after PVP adsorption. Copyright 2001 Academic Press.     

How does huperzine A enter and leave the binding gorge of acetylcholinesterase? Steered molecular dynamics simulations

The entering and leaving processes of Huperzine A (HupA) binding with the long active-site gorge of Torpedo californica acetylcholinesterase (TcAChE) have been investigated by using steered molecular dynamics simulations. The analysis of the force required along the pathway shows that it is easier for HupA to bind to the active site of AChE than to disassociate from it, which for the first time interprets at the atomic level the previous experimental result that unbinding process of HupA is much slower than its binding process to AChE. The direct hydrogen bonds, water bridges, and hydrophobic interactions were analyzed during two steered molecular dynamics (SMD) simulations. Break of the direct hydrogen bond needs a great pulling force. The steric hindrance of bottleneck might be the most important factor to produce the maximal rupture force for HupA to leave the binding site but it has a little effect on the binding process of HupA with AChE. Residue Asp72 forms a lot of water bridges with HupA leaving and entering the AChE binding gorge, acting as a clamp to take out HupA from or put HupA into the active site. The flip of the peptide bond between Gly117 and Gly118 has been detected during both the conventional MD and SMD simulations. The simulation results indicate that this flip phenomenon could be an intrinsic property of AChE and the Gly117-Gly118 peptide bond in both HupA bound and unbound AChE structures tends to adopt the native enzyme structure. At last, in a vacuum the rupture force is increased up to 1500 pN while in water solution the greatest rupture force is about 800 pN, which means water molecules in the binding gorge act as lubricant to facilitate HupA entering or leaving the binding gorge.     

Determination of higher molecular weight aliphatic aldehydes and ketones

The visible absorption spectra have been measured for the reaction products formed by aldehydes and ketones with p-nitrobenzenediazonium fluoborate in a phosphoric acid-2-methoxyethanol solvent medium. The absorption maxima for the reaction products of higher molecular weight aldehydes and ketones are much more intense than those formed by formaldehyde, acetaldehyde and acetone. This intensity effect has been used to analyze for propionaldehyde in mixtures also containing formaldehyde, acetaldehyde or acetone. The nature of the reaction products are considered.