Mechanism of the chiral SHG activity of bacteriorhodopsin films

The nonlinear optical activity of bacteriorhodopsin (bR) Langmuir-Blodgett (LB) films were investigated computationally and experimentally. The second harmonic generation optical rotary dispersion (SHG-ORD) response was calculated directly from the known structure and orientation of the PSB retinal chromophore within bR with no adjustable parameters. The predicted results agree remarkably well in sign, magnitude, and trend with the experimental SHG-ORD measurements. The calculations indicated negligible chirality with the tensor for the PSB retinal chromophore, but significant chiral-specific activity for the thin film through a relatively simple orientational mechanism.     

Reversible electrowetting of vertically aligned superhydrophobic carbon nanofibers

Reversible electrostatically induced wetting (electrowetting) of vertically aligned superhydrophobic carbon nanofibers has been investigated. Carbon nanofibers on a 5 x 5 microm pitch were grown on Si substrates, electrically insulated with a conformal dielectric, and hydrophobized with fluoropolymer. This nanostructured scaffold exhibited superhydrophobic behavior for saline (theta approximately 160 degrees). Electrowetting induced a contact angle reduction to theta approximately 100 degrees. Competitive two-liquid (dodecane/saline) electrowetting exhibited reversibility on the same nanostructured scaffold. Without applied bias, ultra-fine-point tip (approximately 25 nm radius) nanofibers result in effectively zero capacitance with the overlying saline layer. Complete electrowetting of the substrate is confirmed as capacitance values increase by several orders of magnitude with increased wetting. These results demonstrate the applicability of reversible electrowetting on nanostructured scaffolds and use of nanofabricated structures that can be integrated with various micro- and nanoelectronic technologies.     

The malonyl transferase activity of type II polyketide synthase acyl carrier proteins

Acyl carrier proteins (ACPs) play a fundamental role in directing intermediates among the enzyme active sites of fatty acid and polyketide synthases (PKSs). In this paper, we demonstrate that the Streptomyces coelicolor (S. coelicolor) actinorhodin (act) PKS ACP can catalyze transfer of malonate to type II S. coelicolor fatty acid synthase (FAS) and other PKS ACPs in vitro. The reciprocal transfer from S. coelicolor FAS ACP to a PKS ACP was not observed. Several mutations in both act ACP and S. coelicolor FAS ACP could be classified by their participation in either donation or acceptance of this malonyl group. These mutations indicated that self-malonylation and malonyl transfer could be completely decoupled, implying that they were separate processes and that a FAS ACP could be converted from a non-malonyl-transferring protein to one with malonyl transferase activity.     

Glycosylated foldamers to probe the carbohydrate-carbohydrate interaction

The synthesis of a triglycosylated helical foldamer based on a combination of cyclopentyl- and pyrrolidinyl-based amino acids is described. This structure is stable in water, maintaining as it does a series of carbohydrate units in proximity to one another, and represents the basis of a new approach to the study of carbohydrate-carbohydrate interactions.     

Coherent combination of high-power, zigzag slab lasers

We demonstrate a scalable architecture for a high-power, high-brightness, solid-state laser based on coherent combinations of master oscillator power amplifier chains. A common master oscillator injects a sequence of multikilowatt Nd:YAG zigzag slab amplifiers. Adaptive optics correct the wavefront of each amplified beamlet. The beamlets are tiled side by side and actively phase locked to form a single output beam. The laser produces 19 kW with beam quality <2x diffraction limited. To the best of our knowledge, this is the brightest cw solid-state laser demonstrated to date.     

Effects of target-masker contextual similarity on the multimasker penalty in a three-talker diotic listening task

In many multitalker listening tasks, the degradation in performance that occurs when the number of interfering talkers increases from one to two is much larger than would be predicted from the corresponding decrease in the signal-to-noise ratio (SNR). In this experiment, a variety of contextually-relevant speech maskers, contextually-irrelevant speech maskers and non-speech maskers were used to examine the impact that the characteristics of the interfering sound sources have on the magnitude of this "multimasker penalty." The results show that a significant multimasker penalty only occurred in cases where two specific conditions were met: 1) the stimulus contained at least one contextually-relevant masker that could be confused with the target; and 2) the signal-to-noise ratio of the target relative to the combined masker stimulus was less than 0 dB. Remarkably, in cases where one masker was contextually relevant, the specific characteristics of the second masker had virtually no impact on the size of the multimasker penalty. Indeed, when the results were corrected for random guessing, there was essentially no difference in performance between conditions with three contextually-relevant talkers and those with two contextually-relevant talkers and one irrelevant talker. The results of a second experiment suggest that the listeners are generally able to hear keywords spoken by all three talkers even in situations where the multimasker penalty occurs, implying that the primary cause of the penalty is a degradation in the listener's ability to use prosodic cues and voice characteristics to link together words spoken at different points in the target phrase.     

Asymptotic Stability of High-dimensional Zakharov–Kuznetsov Solitons

We prove that solitons (or solitary waves) of the Zakharov–Kuznetsov (ZK) equation, a physically relevant high dimensional generalization of the Korteweg–de Vries (KdV) equation appearing in Plasma Physics, and having mixed KdV and nonlinear Schrödinger (NLS) dynamics, are strongly asymptotically stable in the energy space. We also prove that the sum of well-arranged solitons is stable in the same space. Orbital stability of ZK solitons is well-known since the work of de Bouard [Proc R Soc Edinburgh 126:89–112, 1996]. Our proofs follow the ideas of Martel [SIAM J Math Anal 157:759–781, 2006] and Martel and Merle [Math Ann 341:391–427, 2008], applied for generalized KdV equations in one dimension. In particular, we extend to the high dimensional case several monotonicity properties for suitable half-portions of mass and energy; we also prove a new Liouville type property that characterizes ZK solitons, and a key Virial identity for the linear and nonlinear part of the ZK dynamics, obtained independently of the mixed KdV–NLS dynamics. This last Virial identity relies on a simple sign condition which is numerically tested for the two and three dimensional cases with no additional spectral assumptions required. Possible extensions to higher dimensions and different nonlinearities could be obtained after a suitable local well-posedness theory in the energy space, and the verification of a corresponding sign condition.     

Characterization of the mupirocin biosynthesis gene cluster from Pseudomonas fluorescens NCIMB 10586

The polyketide antibiotic mupirocin (pseudomonic acid) produced by Pseudomonas fluorescens NCIMB 10586 competitively inhibits bacterial isoleucyl-tRNA synthase and is useful in controlling Staphylococcus aureus, particularly methicillin-resistant Staphylococcus aureus. The 74 kb mupirocin biosynthesis cluster has been sequenced, and putative enzymatic functions of many of the open reading frames (ORFs) have been identified. The mupirocin cluster is a combination of six larger ORFs (mmpA-F), containing several domains resembling the multifunctional proteins of polyketide synthase and fatty acid synthase type I systems, and individual genes (mupA-X and macpA-E), some of which show similarity to type II systems (mupB, mupD, mupG, and mupS). Gene knockout experiments demonstrated the importance of regions in mupirocin production, and complementation of the disrupted gene confirmed that the phenotypes were not due to polar effects. A model for mupirocin biosynthesis is presented based on the sequence and biochemical evidence.     

Non-Filippov dynamics arising from the smoothing of nonsmooth systems,and its robustness to noise

Switch-like behaviour in dynamical systems may be modelled by highly nonlinear functions, such as Hill functions or sigmoid functions, or alternatively by piecewise-smooth functions, such as step functions. Consistent modelling requires that piecewise-smooth and smooth dynamical systems have similar dynamics, but the conditions for such similarity are not well understood. Here we show that by smoothing out a piecewise-smooth system one may obtain dynamics that is inconsistent with the accepted wisdom — so-called Filippov dynamics — at a discontinuity, even in the piecewise-smooth limit. By subjecting the system to white noise, we show that these discrepancies can be understood in terms of potential wells that allow solutions to dwell at the discontinuity for long times. Moreover we show that spurious dynamics will revert to Filippov dynamics, with a small degree of stochasticity, when the noise magnitude is sufficiently large compared to the order of smoothing. We apply the results to a model of a dry-friction oscillator, where spurious dynamics (inconsistent with Filippov’s convention or with Coulomb’s model of friction) can account for different coefficients of static and kinetic friction, but under sufficient noise the system reverts to dynamics consistent with Filippov’s convention (and with Coulomb-like friction).